Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06824

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06823 and MPMX19_06824 are separated by 36 nucleotidesMPMX19_06824 and MPMX19_06825 are separated by 257 nucleotides MPMX19_06823: MPMX19_06823 - (Z)-2-((N-methylformamido)methylene)-5- hydroxybutyrolactone dehydrogenase, at 87,767 to 89,278 _06823 MPMX19_06824: MPMX19_06824 - Flavin-dependent trigonelline monooxygenase, reductase component, at 89,315 to 90,337 _06824 MPMX19_06825: MPMX19_06825 - hypothetical protein, at 90,595 to 91,443 _06825 Position (kb) 89 90 91Strain fitness (log2 ratio) -2 -1 0 1at 88.362 kb on + strand, within MPMX19_06823at 88.362 kb on + strand, within MPMX19_06823at 88.362 kb on + strand, within MPMX19_06823at 88.362 kb on + strand, within MPMX19_06823at 88.363 kb on - strand, within MPMX19_06823at 88.363 kb on - strand, within MPMX19_06823at 88.363 kb on - strand, within MPMX19_06823at 88.363 kb on - strand, within MPMX19_06823at 88.363 kb on - strand, within MPMX19_06823at 88.914 kb on + strand, within MPMX19_06823at 88.914 kb on + strand, within MPMX19_06823at 88.914 kb on + strand, within MPMX19_06823at 88.914 kb on + strand, within MPMX19_06823at 88.915 kb on - strand, within MPMX19_06823at 88.915 kb on - strand, within MPMX19_06823at 88.915 kb on - strand, within MPMX19_06823at 88.915 kb on - strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.920 kb on + strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 88.921 kb on - strand, within MPMX19_06823at 89.154 kb on + strandat 89.154 kb on + strandat 89.181 kb on + strandat 89.182 kb on - strandat 89.182 kb on - strandat 89.182 kb on - strandat 89.182 kb on - strandat 89.193 kb on + strandat 89.193 kb on + strandat 89.193 kb on + strandat 89.194 kb on - strandat 89.194 kb on - strandat 89.194 kb on - strandat 89.232 kb on + strandat 89.232 kb on + strandat 89.232 kb on + strandat 89.232 kb on + strandat 89.232 kb on + strandat 89.232 kb on + strandat 89.232 kb on + strandat 89.232 kb on + strandat 89.232 kb on + strandat 89.233 kb on - strandat 89.233 kb on - strandat 89.233 kb on - strandat 89.233 kb on - strandat 89.233 kb on - strandat 89.233 kb on - strandat 89.289 kb on + strandat 89.400 kb on + strandat 89.400 kb on + strandat 89.400 kb on + strandat 89.400 kb on + strandat 89.400 kb on + strandat 89.401 kb on - strandat 89.401 kb on - strandat 89.436 kb on + strand, within MPMX19_06824at 89.436 kb on + strand, within MPMX19_06824at 89.436 kb on + strand, within MPMX19_06824at 89.437 kb on - strand, within MPMX19_06824at 89.437 kb on - strand, within MPMX19_06824at 89.437 kb on - strand, within MPMX19_06824at 89.437 kb on - strand, within MPMX19_06824at 89.563 kb on - strand, within MPMX19_06824at 89.563 kb on - strand, within MPMX19_06824at 89.607 kb on + strand, within MPMX19_06824at 90.119 kb on - strand, within MPMX19_06824at 90.256 kb on + strandat 90.256 kb on + strandat 90.257 kb on - strandat 90.257 kb on - strandat 90.369 kb on + strandat 90.370 kb on - strandat 90.402 kb on - strandat 90.770 kb on + strand, within MPMX19_06825at 90.770 kb on + strand, within MPMX19_06825at 90.771 kb on - strand, within MPMX19_06825at 90.771 kb on - strand, within MPMX19_06825at 90.771 kb on - strand, within MPMX19_06825at 90.863 kb on + strand, within MPMX19_06825at 90.863 kb on + strand, within MPMX19_06825at 90.863 kb on + strand, within MPMX19_06825at 90.864 kb on - strand, within MPMX19_06825at 90.864 kb on - strand, within MPMX19_06825at 90.864 kb on - strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.098 kb on - strand, within MPMX19_06825at 91.098 kb on - strand, within MPMX19_06825at 91.098 kb on - strand, within MPMX19_06825at 91.191 kb on - strand, within MPMX19_06825at 91.298 kb on + strand, within MPMX19_06825at 91.298 kb on + strand, within MPMX19_06825at 91.299 kb on - strand, within MPMX19_06825at 91.299 kb on - strand, within MPMX19_06825at 91.299 kb on - strand, within MPMX19_06825

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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88,362 + MPMX19_06823 0.39 +0.1
88,362 + MPMX19_06823 0.39 +0.0
88,362 + MPMX19_06823 0.39 -1.2
88,362 + MPMX19_06823 0.39 +1.4
88,363 - MPMX19_06823 0.39 -0.1
88,363 - MPMX19_06823 0.39 -0.3
88,363 - MPMX19_06823 0.39 +0.3
88,363 - MPMX19_06823 0.39 -0.0
88,363 - MPMX19_06823 0.39 -0.3
88,914 + MPMX19_06823 0.76 -0.0
88,914 + MPMX19_06823 0.76 +0.7
88,914 + MPMX19_06823 0.76 -1.1
88,914 + MPMX19_06823 0.76 +0.3
88,915 - MPMX19_06823 0.76 +0.5
88,915 - MPMX19_06823 0.76 -0.4
88,915 - MPMX19_06823 0.76 -0.7
88,915 - MPMX19_06823 0.76 -1.9
88,920 + MPMX19_06823 0.76 +0.5
88,920 + MPMX19_06823 0.76 -0.3
88,920 + MPMX19_06823 0.76 -0.1
88,920 + MPMX19_06823 0.76 -0.8
88,920 + MPMX19_06823 0.76 +0.7
88,920 + MPMX19_06823 0.76 -0.8
88,920 + MPMX19_06823 0.76 +0.3
88,920 + MPMX19_06823 0.76 -0.7
88,920 + MPMX19_06823 0.76 -0.4
88,920 + MPMX19_06823 0.76 -2.2
88,920 + MPMX19_06823 0.76 +0.3
88,920 + MPMX19_06823 0.76 +0.4
88,920 + MPMX19_06823 0.76 -1.4
88,921 - MPMX19_06823 0.76 -0.1
88,921 - MPMX19_06823 0.76 +0.4
88,921 - MPMX19_06823 0.76 +0.7
88,921 - MPMX19_06823 0.76 -0.7
88,921 - MPMX19_06823 0.76 -1.1
88,921 - MPMX19_06823 0.76 -1.0
88,921 - MPMX19_06823 0.76 -2.5
88,921 - MPMX19_06823 0.76 -0.0
88,921 - MPMX19_06823 0.76 -0.3
88,921 - MPMX19_06823 0.76 -0.1
88,921 - MPMX19_06823 0.76 +1.0
88,921 - MPMX19_06823 0.76 -0.5
88,921 - MPMX19_06823 0.76 -1.4
88,921 - MPMX19_06823 0.76 -0.8
88,921 - MPMX19_06823 0.76 +0.7
88,921 - MPMX19_06823 0.76 -1.1
88,921 - MPMX19_06823 0.76 -0.2
88,921 - MPMX19_06823 0.76 -0.3
88,921 - MPMX19_06823 0.76 -0.7
89,154 + -0.7
89,154 + -0.5
89,181 + +0.8
89,182 - +1.1
89,182 - -0.5
89,182 - -0.7
89,182 - -0.5
89,193 + -2.1
89,193 + +0.0
89,193 + -0.0
89,194 - -0.5
89,194 - -1.2
89,194 - -1.1
89,232 + +0.4
89,232 + -0.3
89,232 + +0.4
89,232 + +0.3
89,232 + -0.5
89,232 + -1.2
89,232 + -1.0
89,232 + +0.8
89,232 + -0.8
89,233 - +0.6
89,233 - +0.1
89,233 - +0.0
89,233 - +0.7
89,233 - +0.1
89,233 - +0.7
89,289 + -1.1
89,400 + -2.3
89,400 + +0.7
89,400 + -0.4
89,400 + -1.1
89,400 + +0.5
89,401 - +0.7
89,401 - -2.7
89,436 + MPMX19_06824 0.12 -1.1
89,436 + MPMX19_06824 0.12 +0.1
89,436 + MPMX19_06824 0.12 -1.0
89,437 - MPMX19_06824 0.12 -0.2
89,437 - MPMX19_06824 0.12 -0.3
89,437 - MPMX19_06824 0.12 -1.2
89,437 - MPMX19_06824 0.12 -0.8
89,563 - MPMX19_06824 0.24 -1.6
89,563 - MPMX19_06824 0.24 -0.5
89,607 + MPMX19_06824 0.29 -1.6
90,119 - MPMX19_06824 0.79 +0.4
90,256 + -1.1
90,256 + +0.6
90,257 - -1.1
90,257 - -0.0
90,369 + -0.2
90,370 - -0.8
90,402 - +0.1
90,770 + MPMX19_06825 0.21 -0.1
90,770 + MPMX19_06825 0.21 -1.3
90,771 - MPMX19_06825 0.21 -0.9
90,771 - MPMX19_06825 0.21 -1.3
90,771 - MPMX19_06825 0.21 -2.5
90,863 + MPMX19_06825 0.32 -1.1
90,863 + MPMX19_06825 0.32 +0.3
90,863 + MPMX19_06825 0.32 -1.3
90,864 - MPMX19_06825 0.32 -0.1
90,864 - MPMX19_06825 0.32 -0.0
90,864 - MPMX19_06825 0.32 -0.7
91,025 + MPMX19_06825 0.51 +0.7
91,025 + MPMX19_06825 0.51 -1.9
91,025 + MPMX19_06825 0.51 +0.4
91,025 + MPMX19_06825 0.51 +0.7
91,025 + MPMX19_06825 0.51 -1.1
91,026 - MPMX19_06825 0.51 +0.7
91,026 - MPMX19_06825 0.51 +0.8
91,026 - MPMX19_06825 0.51 -1.6
91,026 - MPMX19_06825 0.51 -0.2
91,026 - MPMX19_06825 0.51 -1.8
91,026 - MPMX19_06825 0.51 +1.4
91,026 - MPMX19_06825 0.51 +0.0
91,097 + MPMX19_06825 0.59 -0.4
91,097 + MPMX19_06825 0.59 -0.3
91,097 + MPMX19_06825 0.59 -0.6
91,097 + MPMX19_06825 0.59 -0.7
91,097 + MPMX19_06825 0.59 +0.7
91,098 - MPMX19_06825 0.59 +1.0
91,098 - MPMX19_06825 0.59 +0.7
91,098 - MPMX19_06825 0.59 -1.1
91,191 - MPMX19_06825 0.70 -1.9
91,298 + MPMX19_06825 0.83 +0.3
91,298 + MPMX19_06825 0.83 -1.2
91,299 - MPMX19_06825 0.83 +0.5
91,299 - MPMX19_06825 0.83 -1.2
91,299 - MPMX19_06825 0.83 -2.0

Or see this region's nucleotide sequence