Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06811

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06810 and MPMX19_06811 are separated by 30 nucleotidesMPMX19_06811 and MPMX19_06812 are separated by 42 nucleotides MPMX19_06810: MPMX19_06810 - hypothetical protein, at 75,124 to 76,392 _06810 MPMX19_06811: MPMX19_06811 - Cytochrome c4, at 76,423 to 76,746 _06811 MPMX19_06812: MPMX19_06812 - hypothetical protein, at 76,789 to 78,597 _06812 Position (kb) 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 75.604 kb on + strand, within MPMX19_06810at 75.604 kb on + strand, within MPMX19_06810at 75.605 kb on - strand, within MPMX19_06810at 75.605 kb on - strand, within MPMX19_06810at 75.605 kb on - strand, within MPMX19_06810at 75.676 kb on + strand, within MPMX19_06810at 75.724 kb on + strand, within MPMX19_06810at 75.724 kb on + strand, within MPMX19_06810at 75.724 kb on + strand, within MPMX19_06810at 75.724 kb on + strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.778 kb on + strand, within MPMX19_06810at 75.779 kb on - strand, within MPMX19_06810at 75.841 kb on + strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.997 kb on + strand, within MPMX19_06810at 75.998 kb on - strand, within MPMX19_06810at 75.998 kb on - strand, within MPMX19_06810at 76.000 kb on + strand, within MPMX19_06810at 76.000 kb on + strand, within MPMX19_06810at 76.000 kb on + strand, within MPMX19_06810at 76.001 kb on - strand, within MPMX19_06810at 76.030 kb on + strand, within MPMX19_06810at 76.078 kb on + strand, within MPMX19_06810at 76.079 kb on - strand, within MPMX19_06810at 76.114 kb on + strand, within MPMX19_06810at 76.141 kb on + strand, within MPMX19_06810at 76.291 kb on + strandat 76.292 kb on - strandat 76.369 kb on + strandat 76.369 kb on + strandat 76.381 kb on + strandat 76.381 kb on + strandat 76.468 kb on + strand, within MPMX19_06811at 76.468 kb on + strand, within MPMX19_06811at 76.468 kb on + strand, within MPMX19_06811at 76.468 kb on + strand, within MPMX19_06811at 76.469 kb on - strand, within MPMX19_06811at 76.469 kb on - strand, within MPMX19_06811at 76.469 kb on - strand, within MPMX19_06811at 76.600 kb on + strand, within MPMX19_06811at 76.600 kb on + strand, within MPMX19_06811at 76.600 kb on + strand, within MPMX19_06811at 76.601 kb on - strand, within MPMX19_06811at 76.601 kb on - strand, within MPMX19_06811at 76.625 kb on - strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.709 kb on - strand, within MPMX19_06811at 76.709 kb on - strand, within MPMX19_06811at 76.709 kb on - strand, within MPMX19_06811at 76.709 kb on - strand, within MPMX19_06811at 76.745 kb on - strandat 76.970 kb on + strand, within MPMX19_06812at 76.971 kb on - strand, within MPMX19_06812at 76.971 kb on - strand, within MPMX19_06812at 76.992 kb on - strand, within MPMX19_06812at 76.992 kb on - strand, within MPMX19_06812at 77.015 kb on + strand, within MPMX19_06812at 77.015 kb on + strand, within MPMX19_06812at 77.048 kb on + strand, within MPMX19_06812at 77.049 kb on - strand, within MPMX19_06812at 77.049 kb on - strand, within MPMX19_06812at 77.187 kb on - strand, within MPMX19_06812

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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75,604 + MPMX19_06810 0.38 +1.2
75,604 + MPMX19_06810 0.38 -1.3
75,605 - MPMX19_06810 0.38 +1.9
75,605 - MPMX19_06810 0.38 -0.0
75,605 - MPMX19_06810 0.38 -1.1
75,676 + MPMX19_06810 0.43 -0.9
75,724 + MPMX19_06810 0.47 -1.2
75,724 + MPMX19_06810 0.47 -1.3
75,724 + MPMX19_06810 0.47 -1.0
75,724 + MPMX19_06810 0.47 +0.1
75,725 - MPMX19_06810 0.47 -1.3
75,725 - MPMX19_06810 0.47 +0.7
75,725 - MPMX19_06810 0.47 -1.0
75,725 - MPMX19_06810 0.47 +1.7
75,725 - MPMX19_06810 0.47 -1.0
75,725 - MPMX19_06810 0.47 -0.2
75,725 - MPMX19_06810 0.47 -1.6
75,778 + MPMX19_06810 0.52 -1.4
75,779 - MPMX19_06810 0.52 +1.0
75,841 + MPMX19_06810 0.57 +0.4
75,842 - MPMX19_06810 0.57 +0.4
75,842 - MPMX19_06810 0.57 +1.0
75,842 - MPMX19_06810 0.57 -0.7
75,842 - MPMX19_06810 0.57 +2.1
75,842 - MPMX19_06810 0.57 -1.4
75,842 - MPMX19_06810 0.57 +0.3
75,997 + MPMX19_06810 0.69 -2.0
75,998 - MPMX19_06810 0.69 +1.4
75,998 - MPMX19_06810 0.69 -0.4
76,000 + MPMX19_06810 0.69 -0.3
76,000 + MPMX19_06810 0.69 -0.3
76,000 + MPMX19_06810 0.69 +1.2
76,001 - MPMX19_06810 0.69 -1.3
76,030 + MPMX19_06810 0.71 +0.1
76,078 + MPMX19_06810 0.75 +0.3
76,079 - MPMX19_06810 0.75 +0.0
76,114 + MPMX19_06810 0.78 -0.6
76,141 + MPMX19_06810 0.80 -1.7
76,291 + -0.0
76,292 - -0.6
76,369 + +0.6
76,369 + -0.6
76,381 + -1.1
76,381 + -0.0
76,468 + MPMX19_06811 0.14 +0.4
76,468 + MPMX19_06811 0.14 -2.1
76,468 + MPMX19_06811 0.14 +1.4
76,468 + MPMX19_06811 0.14 -0.1
76,469 - MPMX19_06811 0.14 -0.6
76,469 - MPMX19_06811 0.14 -1.4
76,469 - MPMX19_06811 0.14 -0.6
76,600 + MPMX19_06811 0.55 -0.5
76,600 + MPMX19_06811 0.55 -1.9
76,600 + MPMX19_06811 0.55 -0.3
76,601 - MPMX19_06811 0.55 -1.3
76,601 - MPMX19_06811 0.55 -0.1
76,625 - MPMX19_06811 0.62 +0.2
76,708 + MPMX19_06811 0.88 -0.7
76,708 + MPMX19_06811 0.88 +0.9
76,708 + MPMX19_06811 0.88 -2.0
76,708 + MPMX19_06811 0.88 +0.0
76,708 + MPMX19_06811 0.88 +0.1
76,708 + MPMX19_06811 0.88 -0.6
76,709 - MPMX19_06811 0.88 -0.3
76,709 - MPMX19_06811 0.88 -3.1
76,709 - MPMX19_06811 0.88 -1.3
76,709 - MPMX19_06811 0.88 -1.5
76,745 - -0.6
76,970 + MPMX19_06812 0.10 +0.5
76,971 - MPMX19_06812 0.10 -0.0
76,971 - MPMX19_06812 0.10 -0.4
76,992 - MPMX19_06812 0.11 -0.9
76,992 - MPMX19_06812 0.11 -0.9
77,015 + MPMX19_06812 0.12 -1.0
77,015 + MPMX19_06812 0.12 +0.1
77,048 + MPMX19_06812 0.14 -0.7
77,049 - MPMX19_06812 0.14 -0.4
77,049 - MPMX19_06812 0.14 -0.7
77,187 - MPMX19_06812 0.22 +0.7

Or see this region's nucleotide sequence