Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06808

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06807 and MPMX19_06808 are separated by 213 nucleotidesMPMX19_06808 and MPMX19_06809 are separated by 103 nucleotides MPMX19_06807: MPMX19_06807 - Solute-binding protein, at 71,752 to 72,792 _06807 MPMX19_06808: MPMX19_06808 - HTH-type transcriptional regulator DmlR, at 73,006 to 73,947 _06808 MPMX19_06809: MPMX19_06809 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 74,051 to 74,854 _06809 Position (kb) 73 74Strain fitness (log2 ratio) -2 -1 0 1 2 3at 72.371 kb on + strand, within MPMX19_06807at 72.371 kb on + strand, within MPMX19_06807at 72.371 kb on + strand, within MPMX19_06807at 72.372 kb on - strand, within MPMX19_06807at 72.372 kb on - strand, within MPMX19_06807at 72.372 kb on - strand, within MPMX19_06807at 72.372 kb on - strand, within MPMX19_06807at 72.380 kb on + strand, within MPMX19_06807at 72.380 kb on + strand, within MPMX19_06807at 72.380 kb on + strand, within MPMX19_06807at 72.381 kb on - strand, within MPMX19_06807at 72.405 kb on - strand, within MPMX19_06807at 72.405 kb on - strand, within MPMX19_06807at 72.405 kb on - strand, within MPMX19_06807at 72.405 kb on - strand, within MPMX19_06807at 72.405 kb on - strand, within MPMX19_06807at 72.500 kb on + strand, within MPMX19_06807at 72.501 kb on - strand, within MPMX19_06807at 72.590 kb on + strand, within MPMX19_06807at 72.591 kb on - strand, within MPMX19_06807at 72.757 kb on + strandat 72.757 kb on + strandat 72.758 kb on - strandat 72.758 kb on - strandat 72.758 kb on - strandat 72.758 kb on - strandat 72.758 kb on - strandat 72.796 kb on + strandat 72.796 kb on + strandat 72.796 kb on + strandat 72.797 kb on - strandat 72.797 kb on - strandat 72.797 kb on - strandat 72.797 kb on - strandat 72.797 kb on - strandat 72.797 kb on - strandat 72.883 kb on + strandat 73.007 kb on + strandat 73.007 kb on + strandat 73.007 kb on + strandat 73.007 kb on + strandat 73.007 kb on + strandat 73.007 kb on + strandat 73.007 kb on + strandat 73.008 kb on - strandat 73.008 kb on - strandat 73.008 kb on - strandat 73.008 kb on - strandat 73.166 kb on + strand, within MPMX19_06808at 73.167 kb on - strand, within MPMX19_06808at 73.167 kb on - strand, within MPMX19_06808at 73.167 kb on - strand, within MPMX19_06808at 73.433 kb on + strand, within MPMX19_06808at 73.433 kb on + strand, within MPMX19_06808at 73.434 kb on - strand, within MPMX19_06808at 73.434 kb on - strand, within MPMX19_06808at 73.651 kb on - strand, within MPMX19_06808at 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.927 kb on - strandat 73.927 kb on - strandat 73.927 kb on - strandat 73.927 kb on - strandat 73.927 kb on - strandat 73.927 kb on - strandat 73.966 kb on + strandat 73.966 kb on + strandat 73.966 kb on + strandat 73.967 kb on - strandat 73.967 kb on - strandat 73.967 kb on - strandat 73.987 kb on + strandat 73.987 kb on + strandat 73.987 kb on + strandat 73.987 kb on + strandat 73.988 kb on - strandat 73.988 kb on - strandat 73.988 kb on - strandat 73.988 kb on - strandat 73.990 kb on - strandat 74.012 kb on + strandat 74.012 kb on + strandat 74.012 kb on + strandat 74.012 kb on + strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.168 kb on + strand, within MPMX19_06809at 74.168 kb on + strand, within MPMX19_06809at 74.168 kb on + strand, within MPMX19_06809at 74.168 kb on + strand, within MPMX19_06809at 74.169 kb on - strand, within MPMX19_06809at 74.169 kb on - strand, within MPMX19_06809at 74.173 kb on + strand, within MPMX19_06809at 74.399 kb on + strand, within MPMX19_06809at 74.400 kb on - strand, within MPMX19_06809at 74.400 kb on - strand, within MPMX19_06809at 74.400 kb on - strand, within MPMX19_06809at 74.417 kb on + strand, within MPMX19_06809at 74.418 kb on - strand, within MPMX19_06809at 74.418 kb on - strand, within MPMX19_06809at 74.503 kb on - strand, within MPMX19_06809at 74.529 kb on - strand, within MPMX19_06809at 74.597 kb on + strand, within MPMX19_06809at 74.606 kb on + strand, within MPMX19_06809at 74.606 kb on + strand, within MPMX19_06809at 74.607 kb on - strand, within MPMX19_06809at 74.633 kb on + strand, within MPMX19_06809at 74.633 kb on + strand, within MPMX19_06809at 74.633 kb on + strand, within MPMX19_06809at 74.753 kb on + strand, within MPMX19_06809at 74.754 kb on - strand, within MPMX19_06809at 74.754 kb on - strand, within MPMX19_06809at 74.825 kb on - strandat 74.917 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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72,371 + MPMX19_06807 0.59 -0.7
72,371 + MPMX19_06807 0.59 +2.0
72,371 + MPMX19_06807 0.59 +0.3
72,372 - MPMX19_06807 0.60 -1.3
72,372 - MPMX19_06807 0.60 -1.7
72,372 - MPMX19_06807 0.60 -2.1
72,372 - MPMX19_06807 0.60 -1.6
72,380 + MPMX19_06807 0.60 -0.3
72,380 + MPMX19_06807 0.60 +0.3
72,380 + MPMX19_06807 0.60 -0.4
72,381 - MPMX19_06807 0.60 -0.0
72,405 - MPMX19_06807 0.63 +0.1
72,405 - MPMX19_06807 0.63 +0.6
72,405 - MPMX19_06807 0.63 -0.9
72,405 - MPMX19_06807 0.63 -1.2
72,405 - MPMX19_06807 0.63 +2.9
72,500 + MPMX19_06807 0.72 -0.4
72,501 - MPMX19_06807 0.72 -2.1
72,590 + MPMX19_06807 0.80 -1.3
72,591 - MPMX19_06807 0.81 -1.7
72,757 + -1.0
72,757 + -2.5
72,758 - +0.2
72,758 - -0.9
72,758 - +1.1
72,758 - +1.7
72,758 - -1.7
72,796 + -0.4
72,796 + +1.9
72,796 + +0.5
72,797 - +1.9
72,797 - -0.4
72,797 - -0.4
72,797 - +0.3
72,797 - +0.1
72,797 - -1.0
72,883 + +2.7
73,007 + -1.5
73,007 + -1.1
73,007 + -0.7
73,007 + -0.3
73,007 + -0.4
73,007 + +0.4
73,007 + -1.2
73,008 - -0.7
73,008 - -0.1
73,008 - +1.7
73,008 - -1.3
73,166 + MPMX19_06808 0.17 +0.1
73,167 - MPMX19_06808 0.17 -0.4
73,167 - MPMX19_06808 0.17 -0.6
73,167 - MPMX19_06808 0.17 +0.1
73,433 + MPMX19_06808 0.45 +0.1
73,433 + MPMX19_06808 0.45 -0.5
73,434 - MPMX19_06808 0.45 -0.9
73,434 - MPMX19_06808 0.45 -1.7
73,651 - MPMX19_06808 0.68 -0.3
73,926 + -0.9
73,926 + +0.7
73,926 + -0.6
73,926 + -1.1
73,926 + -0.5
73,926 + -0.3
73,926 + -1.2
73,926 + -0.3
73,926 + +0.3
73,926 + +0.2
73,926 + -0.5
73,927 - +1.3
73,927 - +1.0
73,927 - +0.5
73,927 - +0.4
73,927 - +1.0
73,927 - +1.1
73,966 + -0.5
73,966 + -0.4
73,966 + +0.1
73,967 - -1.0
73,967 - -0.5
73,967 - -1.5
73,987 + +0.8
73,987 + -1.1
73,987 + -0.1
73,987 + +0.1
73,988 - -0.1
73,988 - +1.3
73,988 - -2.2
73,988 - -0.7
73,990 - -1.1
74,012 + -0.3
74,012 + -0.6
74,012 + -1.1
74,012 + -0.5
74,013 - -1.0
74,013 - +0.5
74,013 - -0.8
74,013 - -0.1
74,013 - -0.1
74,013 - -1.5
74,013 - -2.2
74,013 - -0.3
74,013 - +0.3
74,168 + MPMX19_06809 0.15 +0.1
74,168 + MPMX19_06809 0.15 -0.7
74,168 + MPMX19_06809 0.15 -1.1
74,168 + MPMX19_06809 0.15 +0.1
74,169 - MPMX19_06809 0.15 +1.0
74,169 - MPMX19_06809 0.15 -0.5
74,173 + MPMX19_06809 0.15 +0.3
74,399 + MPMX19_06809 0.43 +0.7
74,400 - MPMX19_06809 0.43 +0.5
74,400 - MPMX19_06809 0.43 -0.1
74,400 - MPMX19_06809 0.43 -0.9
74,417 + MPMX19_06809 0.46 +0.7
74,418 - MPMX19_06809 0.46 +0.3
74,418 - MPMX19_06809 0.46 -0.8
74,503 - MPMX19_06809 0.56 -1.5
74,529 - MPMX19_06809 0.59 -0.5
74,597 + MPMX19_06809 0.68 -0.2
74,606 + MPMX19_06809 0.69 +0.7
74,606 + MPMX19_06809 0.69 +0.1
74,607 - MPMX19_06809 0.69 +2.0
74,633 + MPMX19_06809 0.72 -0.6
74,633 + MPMX19_06809 0.72 -1.6
74,633 + MPMX19_06809 0.72 -2.2
74,753 + MPMX19_06809 0.87 -1.2
74,754 - MPMX19_06809 0.87 -0.5
74,754 - MPMX19_06809 0.87 +2.0
74,825 - +0.3
74,917 + -0.9

Or see this region's nucleotide sequence