Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06805

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06804 and MPMX19_06805 are separated by 33 nucleotidesMPMX19_06805 and MPMX19_06806 are separated by 82 nucleotidesMPMX19_06806 and MPMX19_06807 are separated by 58 nucleotides MPMX19_06804: MPMX19_06804 - hypothetical protein, at 68,735 to 69,721 _06804 MPMX19_06805: MPMX19_06805 - hypothetical protein, at 69,755 to 70,840 _06805 MPMX19_06806: MPMX19_06806 - Decarboxylase NovR, at 70,923 to 71,693 _06806 MPMX19_06807: MPMX19_06807 - Solute-binding protein, at 71,752 to 72,792 _06807 Position (kb) 69 70 71Strain fitness (log2 ratio) -2 -1 0 1at 69.114 kb on + strand, within MPMX19_06804at 69.114 kb on + strand, within MPMX19_06804at 69.114 kb on + strand, within MPMX19_06804at 69.115 kb on - strand, within MPMX19_06804at 69.115 kb on - strand, within MPMX19_06804at 69.792 kb on + strandat 69.793 kb on - strandat 70.133 kb on - strand, within MPMX19_06805at 70.365 kb on + strand, within MPMX19_06805at 70.365 kb on + strand, within MPMX19_06805at 70.365 kb on + strand, within MPMX19_06805at 70.365 kb on + strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.934 kb on - strandat 70.934 kb on - strandat 70.934 kb on - strandat 70.934 kb on - strandat 70.934 kb on - strandat 70.996 kb on + strandat 70.997 kb on - strandat 71.261 kb on - strand, within MPMX19_06806at 71.275 kb on + strand, within MPMX19_06806at 71.290 kb on + strand, within MPMX19_06806at 71.290 kb on + strand, within MPMX19_06806at 71.290 kb on + strand, within MPMX19_06806at 71.290 kb on + strand, within MPMX19_06806at 71.291 kb on - strand, within MPMX19_06806at 71.500 kb on + strand, within MPMX19_06806at 71.500 kb on + strand, within MPMX19_06806at 71.500 kb on + strand, within MPMX19_06806at 71.501 kb on - strand, within MPMX19_06806at 71.501 kb on - strand, within MPMX19_06806at 71.569 kb on + strand, within MPMX19_06806at 71.569 kb on + strand, within MPMX19_06806at 71.569 kb on + strand, within MPMX19_06806at 71.569 kb on + strand, within MPMX19_06806at 71.570 kb on - strand, within MPMX19_06806at 71.570 kb on - strand, within MPMX19_06806at 71.570 kb on - strand, within MPMX19_06806at 71.608 kb on + strand, within MPMX19_06806at 71.674 kb on + strandat 71.675 kb on - strandat 71.719 kb on + strandat 71.719 kb on + strandat 71.719 kb on + strandat 71.719 kb on + strandat 71.720 kb on - strandat 71.750 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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69,114 + MPMX19_06804 0.38 +0.1
69,114 + MPMX19_06804 0.38 -0.5
69,114 + MPMX19_06804 0.38 -0.3
69,115 - MPMX19_06804 0.39 -0.5
69,115 - MPMX19_06804 0.39 +0.1
69,792 + +0.3
69,793 - -0.3
70,133 - MPMX19_06805 0.35 -0.5
70,365 + MPMX19_06805 0.56 -0.6
70,365 + MPMX19_06805 0.56 +0.1
70,365 + MPMX19_06805 0.56 +0.7
70,365 + MPMX19_06805 0.56 -0.2
70,366 - MPMX19_06805 0.56 -1.2
70,366 - MPMX19_06805 0.56 +0.4
70,366 - MPMX19_06805 0.56 -0.9
70,366 - MPMX19_06805 0.56 -0.4
70,366 - MPMX19_06805 0.56 +0.6
70,366 - MPMX19_06805 0.56 -2.1
70,366 - MPMX19_06805 0.56 -1.6
70,680 + MPMX19_06805 0.85 +0.1
70,680 + MPMX19_06805 0.85 +0.5
70,680 + MPMX19_06805 0.85 -1.3
70,680 + MPMX19_06805 0.85 -0.4
70,680 + MPMX19_06805 0.85 +1.6
70,680 + MPMX19_06805 0.85 -0.9
70,680 + MPMX19_06805 0.85 +0.0
70,680 + MPMX19_06805 0.85 -0.5
70,680 + MPMX19_06805 0.85 +0.1
70,680 + MPMX19_06805 0.85 -0.8
70,681 - MPMX19_06805 0.85 -1.1
70,681 - MPMX19_06805 0.85 +0.2
70,681 - MPMX19_06805 0.85 -1.9
70,681 - MPMX19_06805 0.85 -1.0
70,681 - MPMX19_06805 0.85 +0.7
70,681 - MPMX19_06805 0.85 -1.2
70,681 - MPMX19_06805 0.85 -0.2
70,681 - MPMX19_06805 0.85 -2.2
70,681 - MPMX19_06805 0.85 -0.1
70,681 - MPMX19_06805 0.85 -1.0
70,681 - MPMX19_06805 0.85 -1.7
70,934 - -0.6
70,934 - -0.7
70,934 - -0.1
70,934 - -0.3
70,934 - -0.9
70,996 + -1.0
70,997 - +0.4
71,261 - MPMX19_06806 0.44 -1.4
71,275 + MPMX19_06806 0.46 -1.3
71,290 + MPMX19_06806 0.48 -1.0
71,290 + MPMX19_06806 0.48 +0.4
71,290 + MPMX19_06806 0.48 -1.0
71,290 + MPMX19_06806 0.48 -0.3
71,291 - MPMX19_06806 0.48 -0.3
71,500 + MPMX19_06806 0.75 -0.3
71,500 + MPMX19_06806 0.75 -0.5
71,500 + MPMX19_06806 0.75 -0.4
71,501 - MPMX19_06806 0.75 -0.2
71,501 - MPMX19_06806 0.75 -0.2
71,569 + MPMX19_06806 0.84 -0.6
71,569 + MPMX19_06806 0.84 +0.7
71,569 + MPMX19_06806 0.84 +0.3
71,569 + MPMX19_06806 0.84 +0.2
71,570 - MPMX19_06806 0.84 -1.3
71,570 - MPMX19_06806 0.84 +0.2
71,570 - MPMX19_06806 0.84 -1.2
71,608 + MPMX19_06806 0.89 -1.3
71,674 + -0.9
71,675 - -1.5
71,719 + -1.9
71,719 + -0.6
71,719 + -1.0
71,719 + -0.0
71,720 - +0.9
71,750 + -0.4

Or see this region's nucleotide sequence