Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06787 and MPMX19_06788 are separated by 108 nucleotides MPMX19_06788 and MPMX19_06789 are separated by 40 nucleotides MPMX19_06789 and MPMX19_06790 are separated by 53 nucleotides
MPMX19_06787: MPMX19_06787 - Fosfomycin resistance protein AbaF, at 51,813 to 53,213
_06787
MPMX19_06788: MPMX19_06788 - putative protein YiaX1, at 53,322 to 54,305
_06788
MPMX19_06789: MPMX19_06789 - Octopine catabolism/uptake operon regulatory protein OccR, at 54,346 to 55,242
_06789
MPMX19_06790: MPMX19_06790 - D-amino acid dehydrogenase, at 55,296 to 56,621
_06790
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 52.635 kb on + strand, within MPMX19_06787 at 52.636 kb on - strand, within MPMX19_06787 at 52.636 kb on - strand, within MPMX19_06787 at 52.636 kb on - strand, within MPMX19_06787 at 52.636 kb on - strand, within MPMX19_06787 at 52.636 kb on - strand, within MPMX19_06787 at 52.640 kb on + strand, within MPMX19_06787 at 52.641 kb on + strand, within MPMX19_06787 at 52.641 kb on + strand, within MPMX19_06787 at 52.641 kb on + strand, within MPMX19_06787 at 52.641 kb on + strand, within MPMX19_06787 at 52.642 kb on - strand, within MPMX19_06787 at 52.642 kb on - strand, within MPMX19_06787 at 52.642 kb on - strand, within MPMX19_06787 at 52.642 kb on - strand, within MPMX19_06787 at 52.662 kb on + strand, within MPMX19_06787 at 52.662 kb on + strand, within MPMX19_06787 at 52.662 kb on + strand, within MPMX19_06787 at 52.663 kb on - strand, within MPMX19_06787 at 52.663 kb on - strand, within MPMX19_06787 at 52.893 kb on + strand, within MPMX19_06787 at 52.893 kb on + strand, within MPMX19_06787 at 52.893 kb on + strand, within MPMX19_06787 at 52.893 kb on + strand, within MPMX19_06787 at 52.893 kb on + strand, within MPMX19_06787 at 52.893 kb on + strand, within MPMX19_06787 at 52.893 kb on + strand, within MPMX19_06787 at 52.893 kb on + strand, within MPMX19_06787 at 52.893 kb on + strand, within MPMX19_06787 at 52.894 kb on - strand, within MPMX19_06787 at 52.894 kb on - strand, within MPMX19_06787 at 52.894 kb on - strand, within MPMX19_06787 at 53.055 kb on + strand, within MPMX19_06787 at 53.085 kb on + strand at 53.085 kb on + strand at 53.085 kb on + strand at 53.085 kb on + strand at 53.085 kb on + strand at 53.085 kb on + strand at 53.085 kb on + strand at 53.085 kb on + strand at 53.085 kb on + strand at 53.085 kb on + strand at 53.086 kb on - strand at 53.086 kb on - strand at 53.086 kb on - strand at 53.086 kb on - strand at 53.086 kb on - strand at 53.086 kb on - strand at 53.086 kb on - strand at 53.086 kb on - strand at 53.086 kb on - strand at 53.124 kb on + strand at 53.124 kb on + strand at 53.125 kb on - strand at 53.125 kb on - strand at 53.125 kb on - strand at 53.125 kb on - strand at 53.125 kb on - strand at 53.125 kb on - strand at 53.125 kb on - strand at 53.340 kb on + strand at 53.340 kb on + strand at 53.341 kb on - strand at 53.341 kb on - strand at 54.066 kb on + strand, within MPMX19_06788 at 54.067 kb on - strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.178 kb on - strand, within MPMX19_06788 at 54.280 kb on + strand at 54.310 kb on + strand at 54.311 kb on - strand at 54.311 kb on - strand at 54.311 kb on - strand at 54.312 kb on + strand at 54.312 kb on + strand at 54.312 kb on + strand at 54.313 kb on - strand at 54.313 kb on - strand at 54.988 kb on + strand, within MPMX19_06789 at 54.988 kb on + strand, within MPMX19_06789 at 54.988 kb on + strand, within MPMX19_06789 at 54.989 kb on - strand, within MPMX19_06789 at 54.989 kb on - strand, within MPMX19_06789
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 52,635 + MPMX19_06787 0.59 -0.9 52,636 - MPMX19_06787 0.59 -0.0 52,636 - MPMX19_06787 0.59 +0.4 52,636 - MPMX19_06787 0.59 +0.7 52,636 - MPMX19_06787 0.59 +0.7 52,636 - MPMX19_06787 0.59 -0.5 52,640 + MPMX19_06787 0.59 -0.3 52,641 + MPMX19_06787 0.59 -0.8 52,641 + MPMX19_06787 0.59 +0.3 52,641 + MPMX19_06787 0.59 +0.1 52,641 + MPMX19_06787 0.59 -0.9 52,642 - MPMX19_06787 0.59 -0.9 52,642 - MPMX19_06787 0.59 -0.5 52,642 - MPMX19_06787 0.59 +0.0 52,642 - MPMX19_06787 0.59 -0.5 52,662 + MPMX19_06787 0.61 -1.2 52,662 + MPMX19_06787 0.61 -0.0 52,662 + MPMX19_06787 0.61 -2.3 52,663 - MPMX19_06787 0.61 -0.8 52,663 - MPMX19_06787 0.61 -0.2 52,893 + MPMX19_06787 0.77 -0.9 52,893 + MPMX19_06787 0.77 +0.0 52,893 + MPMX19_06787 0.77 -1.7 52,893 + MPMX19_06787 0.77 -1.4 52,893 + MPMX19_06787 0.77 +1.1 52,893 + MPMX19_06787 0.77 -0.9 52,893 + MPMX19_06787 0.77 +2.1 52,893 + MPMX19_06787 0.77 +0.4 52,893 + MPMX19_06787 0.77 -1.9 52,894 - MPMX19_06787 0.77 -0.4 52,894 - MPMX19_06787 0.77 +0.1 52,894 - MPMX19_06787 0.77 +1.0 53,055 + MPMX19_06787 0.89 -0.9 53,085 + -0.0 53,085 + +0.1 53,085 + -1.4 53,085 + +0.3 53,085 + -1.3 53,085 + +0.5 53,085 + -0.8 53,085 + -1.7 53,085 + -1.7 53,085 + -0.3 53,086 - -0.6 53,086 - -1.2 53,086 - -0.1 53,086 - -0.4 53,086 - -1.5 53,086 - +0.7 53,086 - -0.0 53,086 - -0.2 53,086 - +1.0 53,124 + +0.6 53,124 + -0.0 53,125 - -1.7 53,125 - -1.1 53,125 - -0.6 53,125 - -0.5 53,125 - -0.3 53,125 - -1.3 53,125 - +0.3 53,340 + +0.6 53,340 + -1.9 53,341 - -1.5 53,341 - -0.9 54,066 + MPMX19_06788 0.76 +0.4 54,067 - MPMX19_06788 0.76 -1.1 54,177 + MPMX19_06788 0.87 -1.6 54,177 + MPMX19_06788 0.87 -0.4 54,177 + MPMX19_06788 0.87 -1.1 54,177 + MPMX19_06788 0.87 +0.3 54,177 + MPMX19_06788 0.87 +0.5 54,178 - MPMX19_06788 0.87 -0.1 54,280 + -1.2 54,310 + -0.9 54,311 - -1.8 54,311 - -0.3 54,311 - -1.0 54,312 + -0.7 54,312 + +1.0 54,312 + -0.8 54,313 - -0.6 54,313 - -0.3 54,988 + MPMX19_06789 0.72 +0.5 54,988 + MPMX19_06789 0.72 +0.2 54,988 + MPMX19_06789 0.72 -1.3 54,989 - MPMX19_06789 0.72 -1.2 54,989 - MPMX19_06789 0.72 +0.8
Or see this region's nucleotide sequence