Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06780

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06778 and MPMX19_06779 are separated by 136 nucleotidesMPMX19_06779 and MPMX19_06780 are separated by 86 nucleotidesMPMX19_06780 and MPMX19_06781 are separated by 107 nucleotidesMPMX19_06781 and MPMX19_06782 are separated by 52 nucleotides MPMX19_06778: MPMX19_06778 - HTH-type transcriptional regulator YhaJ, at 43,039 to 43,968 _06778 MPMX19_06779: MPMX19_06779 - Quercetin 2,3-dioxygenase, at 44,105 to 44,803 _06779 MPMX19_06780: MPMX19_06780 - Potassium channel, at 44,890 to 45,465 _06780 MPMX19_06781: MPMX19_06781 - hypothetical protein, at 45,573 to 45,803 _06781 MPMX19_06782: MPMX19_06782 - Pyruvate dehydrogenase complex repressor, at 45,856 to 46,659 _06782 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1at 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.192 kb on + strand, within MPMX19_06779at 44.192 kb on + strand, within MPMX19_06779at 44.192 kb on + strand, within MPMX19_06779at 44.192 kb on + strand, within MPMX19_06779at 44.193 kb on - strand, within MPMX19_06779at 44.193 kb on - strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.357 kb on - strand, within MPMX19_06779at 44.636 kb on + strand, within MPMX19_06779at 44.637 kb on - strand, within MPMX19_06779at 44.663 kb on + strand, within MPMX19_06779at 44.663 kb on + strand, within MPMX19_06779at 44.664 kb on - strand, within MPMX19_06779at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.056 kb on - strand, within MPMX19_06780at 45.056 kb on - strand, within MPMX19_06780at 45.056 kb on - strand, within MPMX19_06780at 45.211 kb on + strand, within MPMX19_06780at 45.212 kb on - strand, within MPMX19_06780at 45.212 kb on - strand, within MPMX19_06780at 45.212 kb on - strand, within MPMX19_06780at 45.245 kb on - strand, within MPMX19_06780at 45.245 kb on - strand, within MPMX19_06780at 45.346 kb on + strand, within MPMX19_06780at 45.346 kb on + strand, within MPMX19_06780at 45.346 kb on + strand, within MPMX19_06780at 45.347 kb on - strand, within MPMX19_06780at 45.347 kb on - strand, within MPMX19_06780at 45.347 kb on - strand, within MPMX19_06780at 45.347 kb on - strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.402 kb on + strand, within MPMX19_06780at 45.403 kb on - strand, within MPMX19_06780at 45.541 kb on + strandat 45.541 kb on + strandat 45.541 kb on + strandat 45.541 kb on + strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.845 kb on + strandat 45.845 kb on + strandat 45.846 kb on - strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.858 kb on - strandat 45.858 kb on - strandat 45.858 kb on - strandat 45.858 kb on - strandat 45.858 kb on - strandat 45.963 kb on - strand, within MPMX19_06782

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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44,032 + +0.1
44,032 + -0.5
44,032 + -2.1
44,032 + -2.1
44,032 + -0.6
44,032 + +0.3
44,032 + -0.5
44,033 - -1.3
44,033 - +1.1
44,033 - +0.1
44,033 - +0.0
44,033 - -0.2
44,033 - -0.9
44,033 - +0.4
44,033 - -0.4
44,033 - +0.4
44,189 + MPMX19_06779 0.12 -0.9
44,189 + MPMX19_06779 0.12 +0.4
44,189 + MPMX19_06779 0.12 +0.6
44,189 + MPMX19_06779 0.12 -0.2
44,189 + MPMX19_06779 0.12 -0.7
44,189 + MPMX19_06779 0.12 -0.8
44,189 + MPMX19_06779 0.12 -1.3
44,189 + MPMX19_06779 0.12 -0.5
44,190 - MPMX19_06779 0.12 -0.5
44,190 - MPMX19_06779 0.12 -0.6
44,190 - MPMX19_06779 0.12 +0.5
44,190 - MPMX19_06779 0.12 -0.9
44,190 - MPMX19_06779 0.12 -0.5
44,190 - MPMX19_06779 0.12 +0.9
44,190 - MPMX19_06779 0.12 -1.0
44,190 - MPMX19_06779 0.12 +0.5
44,192 + MPMX19_06779 0.12 +1.3
44,192 + MPMX19_06779 0.12 -1.0
44,192 + MPMX19_06779 0.12 +0.3
44,192 + MPMX19_06779 0.12 +0.1
44,193 - MPMX19_06779 0.13 -1.3
44,193 - MPMX19_06779 0.13 -0.1
44,303 + MPMX19_06779 0.28 -1.7
44,303 + MPMX19_06779 0.28 -0.8
44,303 + MPMX19_06779 0.28 -0.1
44,303 + MPMX19_06779 0.28 +1.2
44,303 + MPMX19_06779 0.28 +0.0
44,304 - MPMX19_06779 0.28 -0.6
44,304 - MPMX19_06779 0.28 +0.3
44,304 - MPMX19_06779 0.28 +0.5
44,304 - MPMX19_06779 0.28 -1.5
44,304 - MPMX19_06779 0.28 -0.3
44,304 - MPMX19_06779 0.28 -0.0
44,304 - MPMX19_06779 0.28 -1.4
44,304 - MPMX19_06779 0.28 -0.5
44,304 - MPMX19_06779 0.28 -0.9
44,357 - MPMX19_06779 0.36 +0.3
44,636 + MPMX19_06779 0.76 +0.8
44,637 - MPMX19_06779 0.76 +0.0
44,663 + MPMX19_06779 0.80 -0.9
44,663 + MPMX19_06779 0.80 -1.7
44,664 - MPMX19_06779 0.80 +0.3
45,025 + MPMX19_06780 0.23 -1.4
45,025 + MPMX19_06780 0.23 -0.1
45,025 + MPMX19_06780 0.23 +0.4
45,025 + MPMX19_06780 0.23 -0.3
45,025 + MPMX19_06780 0.23 -0.0
45,025 + MPMX19_06780 0.23 +0.7
45,025 + MPMX19_06780 0.23 -0.9
45,025 + MPMX19_06780 0.23 -0.4
45,025 + MPMX19_06780 0.23 -0.7
45,025 + MPMX19_06780 0.23 -0.1
45,025 + MPMX19_06780 0.23 -2.3
45,025 + MPMX19_06780 0.23 +0.5
45,026 - MPMX19_06780 0.24 +0.6
45,026 - MPMX19_06780 0.24 +0.7
45,026 - MPMX19_06780 0.24 -1.4
45,026 - MPMX19_06780 0.24 -1.7
45,026 - MPMX19_06780 0.24 -0.9
45,026 - MPMX19_06780 0.24 -0.9
45,026 - MPMX19_06780 0.24 -1.3
45,026 - MPMX19_06780 0.24 -1.1
45,026 - MPMX19_06780 0.24 -0.5
45,026 - MPMX19_06780 0.24 -1.7
45,026 - MPMX19_06780 0.24 -0.2
45,056 - MPMX19_06780 0.29 +1.2
45,056 - MPMX19_06780 0.29 -1.9
45,056 - MPMX19_06780 0.29 -1.4
45,211 + MPMX19_06780 0.56 -0.5
45,212 - MPMX19_06780 0.56 -1.1
45,212 - MPMX19_06780 0.56 -1.6
45,212 - MPMX19_06780 0.56 -0.3
45,245 - MPMX19_06780 0.62 +1.0
45,245 - MPMX19_06780 0.62 -0.2
45,346 + MPMX19_06780 0.79 -0.2
45,346 + MPMX19_06780 0.79 -0.6
45,346 + MPMX19_06780 0.79 +1.4
45,347 - MPMX19_06780 0.79 +0.1
45,347 - MPMX19_06780 0.79 +0.1
45,347 - MPMX19_06780 0.79 -1.5
45,347 - MPMX19_06780 0.79 -1.7
45,400 + MPMX19_06780 0.89 -0.7
45,400 + MPMX19_06780 0.89 -1.4
45,400 + MPMX19_06780 0.89 -0.8
45,400 + MPMX19_06780 0.89 -1.0
45,400 + MPMX19_06780 0.89 +1.1
45,400 + MPMX19_06780 0.89 +0.6
45,400 + MPMX19_06780 0.89 -0.9
45,400 + MPMX19_06780 0.89 -1.3
45,400 + MPMX19_06780 0.89 -0.9
45,400 + MPMX19_06780 0.89 -0.9
45,400 + MPMX19_06780 0.89 -0.1
45,400 + MPMX19_06780 0.89 -0.1
45,400 + MPMX19_06780 0.89 -0.9
45,401 - MPMX19_06780 0.89 -0.8
45,401 - MPMX19_06780 0.89 -1.6
45,401 - MPMX19_06780 0.89 -1.6
45,401 - MPMX19_06780 0.89 +1.7
45,401 - MPMX19_06780 0.89 +1.1
45,401 - MPMX19_06780 0.89 -1.0
45,401 - MPMX19_06780 0.89 -1.6
45,401 - MPMX19_06780 0.89 -0.6
45,401 - MPMX19_06780 0.89 -0.9
45,402 + MPMX19_06780 0.89 +0.5
45,403 - MPMX19_06780 0.89 -1.5
45,541 + -2.0
45,541 + -0.2
45,541 + -0.3
45,541 + -0.9
45,542 - +0.5
45,542 - -1.1
45,542 - -0.9
45,542 - -0.6
45,542 - -0.9
45,542 - -1.0
45,542 - -0.1
45,542 - -0.6
45,542 - -1.5
45,845 + +0.2
45,845 + -0.9
45,846 - +0.4
45,857 + -0.5
45,857 + -0.9
45,857 + -0.5
45,857 + -0.8
45,857 + +0.4
45,857 + +0.1
45,857 + +1.1
45,857 + -0.0
45,858 - +0.1
45,858 - +1.7
45,858 - -1.0
45,858 - +0.7
45,858 - +0.3
45,963 - MPMX19_06782 0.13 -0.1

Or see this region's nucleotide sequence