Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06741 and MPMX19_06742 are separated by 4 nucleotides MPMX19_06742 and MPMX19_06743 overlap by 4 nucleotides MPMX19_06743 and MPMX19_06744 are separated by 53 nucleotides MPMX19_06744 and MPMX19_06745 are separated by 83 nucleotides
MPMX19_06741: MPMX19_06741 - hypothetical protein, at 6,153 to 6,431
_06741
MPMX19_06742: MPMX19_06742 - Chemotaxis protein CheY, at 6,436 to 6,804
_06742
MPMX19_06743: MPMX19_06743 - Chemotaxis protein CheA, at 6,801 to 8,792
_06743
MPMX19_06744: MPMX19_06744 - Chemotaxis protein CheW, at 8,846 to 9,298
_06744
MPMX19_06745: MPMX19_06745 - hypothetical protein, at 9,382 to 11,610
_06745
Position (kb) 6
7
8
9 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.944 kb on + strand at 5.944 kb on + strand at 5.945 kb on - strand at 5.949 kb on + strand at 5.950 kb on - strand at 5.950 kb on - strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.957 kb on - strand at 5.957 kb on - strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 6.266 kb on - strand, within MPMX19_06741 at 6.432 kb on + strand at 6.433 kb on - strand at 6.433 kb on - strand at 6.449 kb on + strand at 6.449 kb on + strand at 6.449 kb on + strand at 6.449 kb on + strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.450 kb on - strand at 6.452 kb on + strand at 6.452 kb on + strand at 6.452 kb on + strand at 6.452 kb on + strand at 6.609 kb on + strand, within MPMX19_06742 at 6.609 kb on + strand, within MPMX19_06742 at 7.086 kb on - strand, within MPMX19_06743 at 7.086 kb on - strand, within MPMX19_06743 at 7.086 kb on - strand, within MPMX19_06743 at 7.086 kb on - strand, within MPMX19_06743 at 8.407 kb on - strand, within MPMX19_06743 at 8.562 kb on + strand, within MPMX19_06743 at 8.562 kb on + strand, within MPMX19_06743 at 8.562 kb on + strand, within MPMX19_06743 at 8.563 kb on - strand, within MPMX19_06743 at 8.563 kb on - strand, within MPMX19_06743 at 9.188 kb on - strand, within MPMX19_06744 at 9.188 kb on - strand, within MPMX19_06744 at 9.559 kb on + strand at 9.560 kb on - strand at 9.560 kb on - strand at 9.560 kb on - strand at 9.613 kb on - strand, within MPMX19_06745 at 9.613 kb on - strand, within MPMX19_06745 at 9.613 kb on - strand, within MPMX19_06745 at 9.676 kb on + strand, within MPMX19_06745
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 5,944 + -0.4 5,944 + -0.2 5,945 - -1.5 5,949 + -0.6 5,950 - +0.3 5,950 - -0.9 5,956 + -1.2 5,956 + +0.1 5,956 + -1.0 5,956 + -1.3 5,956 + -0.3 5,956 + -0.2 5,956 + -2.0 5,956 + -0.7 5,957 - +0.0 5,957 - +1.0 5,958 + -0.7 5,958 + -0.4 5,958 + -0.9 5,958 + +0.5 5,958 + -1.6 5,958 + -0.9 5,958 + -2.5 5,958 + -0.1 5,958 + -0.7 5,958 + -2.5 5,958 + +0.3 5,958 + +0.1 5,958 + -0.7 5,958 + -0.3 5,958 + -0.6 5,958 + -0.0 5,958 + -1.3 5,958 + -1.9 5,958 + +1.0 5,959 - -0.9 5,959 - -1.0 5,959 - +0.1 5,959 - -2.0 5,959 - +0.9 5,959 - -0.6 5,959 - -0.6 5,959 - -0.3 5,959 - +0.2 5,959 - -2.2 5,959 - -1.3 5,959 - +0.2 5,959 - -0.6 5,959 - -0.3 5,959 - -0.9 5,959 - +2.7 5,959 - -0.5 5,959 - -0.8 5,959 - +0.7 6,266 - MPMX19_06741 0.41 -1.6 6,432 + +1.3 6,433 - -1.1 6,433 - +0.0 6,449 + -2.0 6,449 + -1.0 6,449 + -0.4 6,449 + +0.9 6,450 - -0.4 6,450 - -1.5 6,450 - -0.4 6,450 - +0.7 6,450 - -2.1 6,450 - -0.9 6,450 - +0.4 6,450 - +2.0 6,450 - -1.0 6,450 - -0.0 6,452 + +0.5 6,452 + -1.7 6,452 + +0.3 6,452 + +0.1 6,609 + MPMX19_06742 0.47 -0.1 6,609 + MPMX19_06742 0.47 -1.5 7,086 - MPMX19_06743 0.14 +0.7 7,086 - MPMX19_06743 0.14 -0.9 7,086 - MPMX19_06743 0.14 -1.7 7,086 - MPMX19_06743 0.14 -1.9 8,407 - MPMX19_06743 0.81 -0.6 8,562 + MPMX19_06743 0.88 -0.6 8,562 + MPMX19_06743 0.88 -1.4 8,562 + MPMX19_06743 0.88 -0.8 8,563 - MPMX19_06743 0.88 +1.0 8,563 - MPMX19_06743 0.88 -1.5 9,188 - MPMX19_06744 0.75 -2.0 9,188 - MPMX19_06744 0.75 -1.5 9,559 + -1.3 9,560 - -0.7 9,560 - +0.1 9,560 - -2.3 9,613 - MPMX19_06745 0.10 -0.6 9,613 - MPMX19_06745 0.10 -1.9 9,613 - MPMX19_06745 0.10 -0.5 9,676 + MPMX19_06745 0.13 -0.7
Or see this region's nucleotide sequence