Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06521

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06520 and MPMX19_06521 are separated by 51 nucleotidesMPMX19_06521 and MPMX19_06522 overlap by 1 nucleotidesMPMX19_06522 and MPMX19_06523 are separated by 34 nucleotides MPMX19_06520: MPMX19_06520 - Nitrate import ATP-binding protein NrtC, at 305,289 to 306,131 _06520 MPMX19_06521: MPMX19_06521 - Putative aliphatic sulfonates-binding protein, at 306,183 to 307,202 _06521 MPMX19_06522: MPMX19_06522 - Putative aliphatic sulfonates transport permease protein SsuC, at 307,202 to 307,945 _06522 MPMX19_06523: MPMX19_06523 - hypothetical protein, at 307,980 to 310,343 _06523 Position (kb) 306 307 308Strain fitness (log2 ratio) -2 -1 0 1at 305.403 kb on + strand, within MPMX19_06520at 305.404 kb on - strand, within MPMX19_06520at 305.595 kb on + strand, within MPMX19_06520at 305.595 kb on + strand, within MPMX19_06520at 305.596 kb on - strand, within MPMX19_06520at 305.596 kb on - strand, within MPMX19_06520at 305.596 kb on - strand, within MPMX19_06520at 305.705 kb on + strand, within MPMX19_06520at 305.706 kb on - strand, within MPMX19_06520at 306.223 kb on - strandat 306.223 kb on - strandat 306.223 kb on - strandat 306.357 kb on + strand, within MPMX19_06521at 306.357 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.450 kb on + strand, within MPMX19_06521at 306.471 kb on + strand, within MPMX19_06521at 306.471 kb on + strand, within MPMX19_06521at 306.522 kb on + strand, within MPMX19_06521at 306.522 kb on + strand, within MPMX19_06521at 306.523 kb on - strand, within MPMX19_06521at 306.843 kb on + strand, within MPMX19_06521at 306.843 kb on + strand, within MPMX19_06521at 307.179 kb on + strandat 307.179 kb on + strandat 307.179 kb on + strandat 307.179 kb on + strandat 307.179 kb on + strandat 307.179 kb on + strandat 307.217 kb on + strandat 307.217 kb on + strandat 307.217 kb on + strandat 307.218 kb on - strandat 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.691 kb on + strand, within MPMX19_06522at 307.691 kb on + strand, within MPMX19_06522at 307.691 kb on + strand, within MPMX19_06522at 307.691 kb on + strand, within MPMX19_06522at 308.028 kb on + strandat 308.028 kb on + strandat 308.028 kb on + strandat 308.028 kb on + strandat 308.121 kb on + strandat 308.121 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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305,403 + MPMX19_06520 0.14 -0.9
305,404 - MPMX19_06520 0.14 -1.1
305,595 + MPMX19_06520 0.36 -0.3
305,595 + MPMX19_06520 0.36 -0.9
305,596 - MPMX19_06520 0.36 +0.3
305,596 - MPMX19_06520 0.36 +0.8
305,596 - MPMX19_06520 0.36 +0.6
305,705 + MPMX19_06520 0.49 +0.7
305,706 - MPMX19_06520 0.49 -0.1
306,223 - +1.7
306,223 - -0.5
306,223 - -2.1
306,357 + MPMX19_06521 0.17 +0.8
306,357 + MPMX19_06521 0.17 -0.6
306,450 + MPMX19_06521 0.26 -0.1
306,450 + MPMX19_06521 0.26 -1.4
306,450 + MPMX19_06521 0.26 -1.3
306,450 + MPMX19_06521 0.26 +0.7
306,450 + MPMX19_06521 0.26 +0.6
306,450 + MPMX19_06521 0.26 -0.7
306,450 + MPMX19_06521 0.26 +0.3
306,450 + MPMX19_06521 0.26 -1.0
306,450 + MPMX19_06521 0.26 +0.4
306,471 + MPMX19_06521 0.28 -1.3
306,471 + MPMX19_06521 0.28 +1.7
306,522 + MPMX19_06521 0.33 -0.1
306,522 + MPMX19_06521 0.33 +0.3
306,523 - MPMX19_06521 0.33 -0.6
306,843 + MPMX19_06521 0.65 +1.2
306,843 + MPMX19_06521 0.65 +0.2
307,179 + +0.9
307,179 + +0.6
307,179 + -1.0
307,179 + -2.5
307,179 + -0.2
307,179 + +0.6
307,217 + +0.5
307,217 + -1.4
307,217 + +0.1
307,218 - +0.6
307,283 + MPMX19_06522 0.11 -0.4
307,283 + MPMX19_06522 0.11 -0.3
307,283 + MPMX19_06522 0.11 -0.4
307,283 + MPMX19_06522 0.11 +0.0
307,283 + MPMX19_06522 0.11 -1.6
307,283 + MPMX19_06522 0.11 -0.7
307,691 + MPMX19_06522 0.66 -1.0
307,691 + MPMX19_06522 0.66 +0.4
307,691 + MPMX19_06522 0.66 -0.2
307,691 + MPMX19_06522 0.66 +1.4
308,028 + +1.2
308,028 + -2.4
308,028 + +0.7
308,028 + -0.3
308,121 + +0.3
308,121 + -0.6

Or see this region's nucleotide sequence