Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06480

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06478 and MPMX19_06479 overlap by 4 nucleotidesMPMX19_06479 and MPMX19_06480 are separated by 9 nucleotidesMPMX19_06480 and MPMX19_06481 are separated by 20 nucleotides MPMX19_06478: MPMX19_06478 - hypothetical protein, at 261,794 to 262,642 _06478 MPMX19_06479: MPMX19_06479 - (R)-phenoxypropionate/alpha-ketoglutarate- dioxygenase, at 262,639 to 263,529 _06479 MPMX19_06480: MPMX19_06480 - hypothetical protein, at 263,539 to 264,573 _06480 MPMX19_06481: MPMX19_06481 - Thiosulfate sulfurtransferase GlpE, at 264,594 to 266,210 _06481 Position (kb) 263 264 265Strain fitness (log2 ratio) -3 -2 -1 0 1at 263.010 kb on - strand, within MPMX19_06479at 263.091 kb on - strand, within MPMX19_06479at 263.091 kb on - strand, within MPMX19_06479at 263.150 kb on + strand, within MPMX19_06479at 263.150 kb on + strand, within MPMX19_06479at 263.165 kb on + strand, within MPMX19_06479at 263.165 kb on + strand, within MPMX19_06479at 263.166 kb on - strand, within MPMX19_06479at 263.166 kb on - strand, within MPMX19_06479at 263.183 kb on + strand, within MPMX19_06479at 263.183 kb on + strand, within MPMX19_06479at 263.183 kb on + strand, within MPMX19_06479at 263.183 kb on + strand, within MPMX19_06479at 263.184 kb on - strand, within MPMX19_06479at 263.184 kb on - strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.267 kb on + strand, within MPMX19_06479at 263.667 kb on - strand, within MPMX19_06480at 263.667 kb on - strand, within MPMX19_06480at 263.738 kb on + strand, within MPMX19_06480at 263.738 kb on + strand, within MPMX19_06480at 263.739 kb on - strand, within MPMX19_06480at 263.739 kb on - strand, within MPMX19_06480at 263.739 kb on - strand, within MPMX19_06480at 263.739 kb on - strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 264.102 kb on - strand, within MPMX19_06480at 264.102 kb on - strand, within MPMX19_06480at 264.102 kb on - strand, within MPMX19_06480at 264.188 kb on + strand, within MPMX19_06480at 264.188 kb on + strand, within MPMX19_06480at 264.189 kb on - strand, within MPMX19_06480at 264.189 kb on - strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.420 kb on - strand, within MPMX19_06480at 264.420 kb on - strand, within MPMX19_06480at 264.432 kb on - strand, within MPMX19_06480at 264.665 kb on - strandat 264.665 kb on - strandat 264.665 kb on - strandat 264.665 kb on - strandat 264.665 kb on - strandat 264.715 kb on + strandat 264.715 kb on + strandat 264.715 kb on + strandat 264.845 kb on - strand, within MPMX19_06481at 264.940 kb on + strand, within MPMX19_06481at 264.940 kb on + strand, within MPMX19_06481at 264.940 kb on + strand, within MPMX19_06481at 264.940 kb on + strand, within MPMX19_06481at 264.940 kb on + strand, within MPMX19_06481at 264.940 kb on + strand, within MPMX19_06481at 265.247 kb on - strand, within MPMX19_06481at 265.247 kb on - strand, within MPMX19_06481at 265.247 kb on - strand, within MPMX19_06481at 265.315 kb on + strand, within MPMX19_06481at 265.315 kb on + strand, within MPMX19_06481at 265.315 kb on + strand, within MPMX19_06481

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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263,010 - MPMX19_06479 0.42 -0.1
263,091 - MPMX19_06479 0.51 +1.2
263,091 - MPMX19_06479 0.51 +0.3
263,150 + MPMX19_06479 0.57 -0.4
263,150 + MPMX19_06479 0.57 -0.8
263,165 + MPMX19_06479 0.59 +0.3
263,165 + MPMX19_06479 0.59 -1.0
263,166 - MPMX19_06479 0.59 -0.3
263,166 - MPMX19_06479 0.59 +0.3
263,183 + MPMX19_06479 0.61 -0.2
263,183 + MPMX19_06479 0.61 -0.0
263,183 + MPMX19_06479 0.61 +0.3
263,183 + MPMX19_06479 0.61 -0.2
263,184 - MPMX19_06479 0.61 -2.0
263,184 - MPMX19_06479 0.61 +0.1
263,267 + MPMX19_06479 0.70 +0.3
263,267 + MPMX19_06479 0.70 -2.2
263,267 + MPMX19_06479 0.70 -0.9
263,267 + MPMX19_06479 0.70 -1.8
263,267 + MPMX19_06479 0.70 +0.2
263,267 + MPMX19_06479 0.70 +0.3
263,267 + MPMX19_06479 0.70 +0.3
263,267 + MPMX19_06479 0.70 -1.3
263,267 + MPMX19_06479 0.70 +0.9
263,267 + MPMX19_06479 0.70 -1.5
263,267 + MPMX19_06479 0.70 -1.0
263,267 + MPMX19_06479 0.70 +0.2
263,267 + MPMX19_06479 0.70 +0.4
263,267 + MPMX19_06479 0.70 +0.1
263,667 - MPMX19_06480 0.12 -2.9
263,667 - MPMX19_06480 0.12 -0.1
263,738 + MPMX19_06480 0.19 +0.6
263,738 + MPMX19_06480 0.19 +0.3
263,739 - MPMX19_06480 0.19 -1.2
263,739 - MPMX19_06480 0.19 +0.1
263,739 - MPMX19_06480 0.19 +0.1
263,739 - MPMX19_06480 0.19 +1.3
263,891 + MPMX19_06480 0.34 +0.4
263,891 + MPMX19_06480 0.34 -0.7
263,891 + MPMX19_06480 0.34 -0.2
263,891 + MPMX19_06480 0.34 +0.2
263,891 + MPMX19_06480 0.34 +1.3
263,892 - MPMX19_06480 0.34 -2.7
263,892 - MPMX19_06480 0.34 -1.6
263,892 - MPMX19_06480 0.34 -0.3
263,892 - MPMX19_06480 0.34 -0.6
263,892 - MPMX19_06480 0.34 +0.5
263,892 - MPMX19_06480 0.34 -1.9
263,892 - MPMX19_06480 0.34 -0.6
264,102 - MPMX19_06480 0.54 -0.6
264,102 - MPMX19_06480 0.54 -0.9
264,102 - MPMX19_06480 0.54 +0.3
264,188 + MPMX19_06480 0.63 -1.0
264,188 + MPMX19_06480 0.63 -1.2
264,189 - MPMX19_06480 0.63 -1.7
264,189 - MPMX19_06480 0.63 -0.4
264,347 + MPMX19_06480 0.78 +0.6
264,347 + MPMX19_06480 0.78 +0.8
264,347 + MPMX19_06480 0.78 -0.7
264,347 + MPMX19_06480 0.78 -0.4
264,347 + MPMX19_06480 0.78 -0.6
264,419 + MPMX19_06480 0.85 -0.5
264,419 + MPMX19_06480 0.85 -1.8
264,419 + MPMX19_06480 0.85 -0.6
264,419 + MPMX19_06480 0.85 +0.8
264,419 + MPMX19_06480 0.85 -0.2
264,420 - MPMX19_06480 0.85 -0.1
264,420 - MPMX19_06480 0.85 +0.5
264,432 - MPMX19_06480 0.86 +0.1
264,665 - +0.8
264,665 - +0.9
264,665 - -0.0
264,665 - +0.2
264,665 - -0.7
264,715 + +0.6
264,715 + -0.9
264,715 + -0.5
264,845 - MPMX19_06481 0.16 +1.7
264,940 + MPMX19_06481 0.21 +1.3
264,940 + MPMX19_06481 0.21 +0.5
264,940 + MPMX19_06481 0.21 +0.3
264,940 + MPMX19_06481 0.21 +1.2
264,940 + MPMX19_06481 0.21 -0.7
264,940 + MPMX19_06481 0.21 -0.4
265,247 - MPMX19_06481 0.40 -0.3
265,247 - MPMX19_06481 0.40 +0.5
265,247 - MPMX19_06481 0.40 -0.4
265,315 + MPMX19_06481 0.45 +0.5
265,315 + MPMX19_06481 0.45 -1.1
265,315 + MPMX19_06481 0.45 -0.4

Or see this region's nucleotide sequence