Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06474

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06473 and MPMX19_06474 are separated by 26 nucleotidesMPMX19_06474 and MPMX19_06475 are separated by 6 nucleotidesMPMX19_06475 and MPMX19_06476 are separated by 128 nucleotides MPMX19_06473: MPMX19_06473 - Putative aliphatic sulfonates-binding protein, at 257,007 to 258,020 _06473 MPMX19_06474: MPMX19_06474 - Vitamin B12 import ATP-binding protein BtuD, at 258,047 to 258,910 _06474 MPMX19_06475: MPMX19_06475 - Putative aliphatic sulfonates transport permease protein SsuC, at 258,917 to 259,744 _06475 MPMX19_06476: MPMX19_06476 - HTH-type transcriptional regulator ArgP, at 259,873 to 260,790 _06476 Position (kb) 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 257.103 kb on - strandat 257.103 kb on - strandat 257.348 kb on - strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.578 kb on + strand, within MPMX19_06473at 257.579 kb on - strand, within MPMX19_06473at 257.656 kb on - strand, within MPMX19_06473at 257.656 kb on - strand, within MPMX19_06473at 257.656 kb on - strand, within MPMX19_06473at 257.670 kb on + strand, within MPMX19_06473at 257.670 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 258.009 kb on - strandat 258.088 kb on - strandat 258.648 kb on - strand, within MPMX19_06474at 259.137 kb on + strand, within MPMX19_06475at 259.278 kb on + strand, within MPMX19_06475at 259.278 kb on + strand, within MPMX19_06475at 259.278 kb on + strand, within MPMX19_06475at 259.278 kb on + strand, within MPMX19_06475at 259.279 kb on - strand, within MPMX19_06475at 259.307 kb on + strand, within MPMX19_06475at 259.307 kb on + strand, within MPMX19_06475at 259.307 kb on + strand, within MPMX19_06475at 259.308 kb on - strand, within MPMX19_06475at 259.308 kb on - strand, within MPMX19_06475at 259.308 kb on - strand, within MPMX19_06475at 259.308 kb on - strand, within MPMX19_06475at 259.308 kb on - strand, within MPMX19_06475at 259.651 kb on + strand, within MPMX19_06475at 259.651 kb on + strand, within MPMX19_06475at 259.651 kb on + strand, within MPMX19_06475at 259.651 kb on + strand, within MPMX19_06475at 259.652 kb on - strand, within MPMX19_06475at 259.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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257,103 - +0.3
257,103 - -0.1
257,348 - MPMX19_06473 0.34 -0.5
257,353 + MPMX19_06473 0.34 -0.3
257,353 + MPMX19_06473 0.34 +0.4
257,353 + MPMX19_06473 0.34 -1.3
257,353 + MPMX19_06473 0.34 +0.8
257,353 + MPMX19_06473 0.34 -0.8
257,354 - MPMX19_06473 0.34 +2.0
257,354 - MPMX19_06473 0.34 +0.3
257,354 - MPMX19_06473 0.34 +0.1
257,354 - MPMX19_06473 0.34 -2.6
257,354 - MPMX19_06473 0.34 -1.1
257,354 - MPMX19_06473 0.34 -0.7
257,354 - MPMX19_06473 0.34 +0.6
257,354 - MPMX19_06473 0.34 -0.1
257,354 - MPMX19_06473 0.34 +0.6
257,432 - MPMX19_06473 0.42 -1.1
257,432 - MPMX19_06473 0.42 -1.7
257,432 - MPMX19_06473 0.42 -2.6
257,432 - MPMX19_06473 0.42 -0.7
257,432 - MPMX19_06473 0.42 -1.1
257,552 - MPMX19_06473 0.54 +1.3
257,552 - MPMX19_06473 0.54 +0.5
257,552 - MPMX19_06473 0.54 -0.6
257,552 - MPMX19_06473 0.54 -0.3
257,552 - MPMX19_06473 0.54 -0.9
257,552 - MPMX19_06473 0.54 +1.0
257,552 - MPMX19_06473 0.54 +1.0
257,552 - MPMX19_06473 0.54 -0.9
257,552 - MPMX19_06473 0.54 -0.6
257,552 - MPMX19_06473 0.54 +0.3
257,552 - MPMX19_06473 0.54 -0.2
257,555 - MPMX19_06473 0.54 -1.1
257,555 - MPMX19_06473 0.54 +2.4
257,555 - MPMX19_06473 0.54 -0.7
257,555 - MPMX19_06473 0.54 -0.7
257,555 - MPMX19_06473 0.54 +0.2
257,555 - MPMX19_06473 0.54 -0.1
257,578 + MPMX19_06473 0.56 -0.1
257,579 - MPMX19_06473 0.56 -1.3
257,656 - MPMX19_06473 0.64 +0.4
257,656 - MPMX19_06473 0.64 +0.6
257,656 - MPMX19_06473 0.64 +0.3
257,670 + MPMX19_06473 0.65 -0.1
257,670 + MPMX19_06473 0.65 -0.9
257,866 + MPMX19_06473 0.85 -0.4
257,866 + MPMX19_06473 0.85 +0.1
257,866 + MPMX19_06473 0.85 +0.5
257,866 + MPMX19_06473 0.85 -0.4
257,866 + MPMX19_06473 0.85 -0.8
258,009 - -0.8
258,088 - +0.1
258,648 - MPMX19_06474 0.70 +0.3
259,137 + MPMX19_06475 0.27 -0.1
259,278 + MPMX19_06475 0.44 +0.1
259,278 + MPMX19_06475 0.44 -0.7
259,278 + MPMX19_06475 0.44 -0.8
259,278 + MPMX19_06475 0.44 -0.9
259,279 - MPMX19_06475 0.44 -0.4
259,307 + MPMX19_06475 0.47 +0.5
259,307 + MPMX19_06475 0.47 -0.4
259,307 + MPMX19_06475 0.47 -0.3
259,308 - MPMX19_06475 0.47 -0.6
259,308 - MPMX19_06475 0.47 -0.6
259,308 - MPMX19_06475 0.47 -1.4
259,308 - MPMX19_06475 0.47 -0.6
259,308 - MPMX19_06475 0.47 +0.3
259,651 + MPMX19_06475 0.89 -0.3
259,651 + MPMX19_06475 0.89 -0.8
259,651 + MPMX19_06475 0.89 -1.2
259,651 + MPMX19_06475 0.89 -0.3
259,652 - MPMX19_06475 0.89 +0.4
259,778 - -0.7

Or see this region's nucleotide sequence