Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06448 and MPMX19_06449 are separated by 357 nucleotides MPMX19_06449 and MPMX19_06450 overlap by 1 nucleotides
MPMX19_06448: MPMX19_06448 - hypothetical protein, at 221,318 to 222,112
_06448
MPMX19_06449: MPMX19_06449 - hypothetical protein, at 222,470 to 222,757
_06449
MPMX19_06450: MPMX19_06450 - Fe(2+) transporter FeoB, at 222,757 to 224,862
_06450
Position (kb) 222
223 Strain fitness (log2 ratio) -2
-1
0
1
2 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.988 kb on + strand, within MPMX19_06448 at 222.163 kb on + strand at 222.163 kb on + strand at 222.163 kb on + strand at 222.163 kb on + strand at 222.164 kb on - strand at 222.164 kb on - strand at 222.238 kb on + strand at 222.238 kb on + strand at 222.239 kb on - strand at 222.301 kb on + strand at 222.301 kb on + strand at 222.301 kb on + strand at 222.302 kb on - strand at 222.303 kb on + strand at 222.303 kb on + strand at 222.304 kb on - strand at 222.304 kb on - strand at 222.304 kb on - strand at 222.335 kb on + strand at 222.335 kb on + strand at 222.335 kb on + strand at 222.335 kb on + strand at 222.336 kb on - strand at 222.336 kb on - strand at 222.336 kb on - strand at 222.447 kb on + strand at 222.447 kb on + strand at 222.448 kb on - strand at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.642 kb on - strand, within MPMX19_06449 at 222.642 kb on - strand, within MPMX19_06449 at 222.736 kb on + strand at 222.868 kb on + strand at 222.869 kb on - strand at 222.869 kb on - strand at 222.869 kb on - strand at 222.955 kb on + strand at 222.955 kb on + strand at 222.955 kb on + strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 223.146 kb on + strand, within MPMX19_06450 at 223.147 kb on - strand, within MPMX19_06450 at 223.316 kb on + strand, within MPMX19_06450 at 223.317 kb on - strand, within MPMX19_06450 at 223.317 kb on - strand, within MPMX19_06450 at 223.354 kb on + strand, within MPMX19_06450 at 223.354 kb on + strand, within MPMX19_06450 at 223.414 kb on - strand, within MPMX19_06450 at 223.418 kb on + strand, within MPMX19_06450 at 223.418 kb on + strand, within MPMX19_06450 at 223.475 kb on + strand, within MPMX19_06450 at 223.475 kb on + strand, within MPMX19_06450 at 223.475 kb on + strand, within MPMX19_06450 at 223.475 kb on + strand, within MPMX19_06450 at 223.476 kb on - strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.709 kb on - strand, within MPMX19_06450 at 223.709 kb on - strand, within MPMX19_06450 at 223.709 kb on - strand, within MPMX19_06450 at 223.709 kb on - strand, within MPMX19_06450 at 223.709 kb on - strand, within MPMX19_06450
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 221,889 + MPMX19_06448 0.72 +0.3 221,889 + MPMX19_06448 0.72 -0.9 221,889 + MPMX19_06448 0.72 -0.7 221,889 + MPMX19_06448 0.72 -0.6 221,889 + MPMX19_06448 0.72 -0.3 221,889 + MPMX19_06448 0.72 -0.2 221,889 + MPMX19_06448 0.72 -0.2 221,889 + MPMX19_06448 0.72 -0.1 221,889 + MPMX19_06448 0.72 -0.4 221,889 + MPMX19_06448 0.72 -0.7 221,889 + MPMX19_06448 0.72 +0.9 221,889 + MPMX19_06448 0.72 +1.2 221,889 + MPMX19_06448 0.72 -0.3 221,889 + MPMX19_06448 0.72 -1.1 221,889 + MPMX19_06448 0.72 -1.0 221,988 + MPMX19_06448 0.84 -0.8 222,163 + +0.8 222,163 + +1.3 222,163 + +1.9 222,163 + +1.4 222,164 - -0.1 222,164 - +0.0 222,238 + -0.2 222,238 + -0.4 222,239 - -1.1 222,301 + -1.2 222,301 + -0.6 222,301 + -0.9 222,302 - -1.4 222,303 + -1.7 222,303 + -0.1 222,304 - -1.0 222,304 - -0.7 222,304 - -1.1 222,335 + -0.9 222,335 + +0.7 222,335 + -1.6 222,335 + +0.9 222,336 - -1.5 222,336 - +0.3 222,336 - +1.2 222,447 + +1.2 222,447 + +0.9 222,448 - +1.5 222,641 + MPMX19_06449 0.59 -0.2 222,641 + MPMX19_06449 0.59 -1.8 222,641 + MPMX19_06449 0.59 -0.5 222,641 + MPMX19_06449 0.59 -2.0 222,641 + MPMX19_06449 0.59 -2.0 222,641 + MPMX19_06449 0.59 -0.4 222,642 - MPMX19_06449 0.60 -0.7 222,642 - MPMX19_06449 0.60 -0.9 222,736 + -0.3 222,868 + +0.2 222,869 - +0.8 222,869 - -1.3 222,869 - -1.4 222,955 + -1.1 222,955 + +0.2 222,955 + -0.4 222,956 - -1.2 222,956 - -0.4 222,956 - -0.5 222,956 - +0.7 222,956 - -0.1 222,956 - -1.6 222,956 - -0.7 223,146 + MPMX19_06450 0.18 -0.6 223,147 - MPMX19_06450 0.19 -0.4 223,316 + MPMX19_06450 0.27 +0.4 223,317 - MPMX19_06450 0.27 -0.7 223,317 - MPMX19_06450 0.27 -1.9 223,354 + MPMX19_06450 0.28 -0.4 223,354 + MPMX19_06450 0.28 -0.8 223,414 - MPMX19_06450 0.31 -0.4 223,418 + MPMX19_06450 0.31 +1.5 223,418 + MPMX19_06450 0.31 -0.7 223,475 + MPMX19_06450 0.34 +0.9 223,475 + MPMX19_06450 0.34 -0.5 223,475 + MPMX19_06450 0.34 +0.4 223,475 + MPMX19_06450 0.34 +1.1 223,476 - MPMX19_06450 0.34 -0.7 223,708 + MPMX19_06450 0.45 +0.7 223,708 + MPMX19_06450 0.45 -1.8 223,708 + MPMX19_06450 0.45 -1.1 223,708 + MPMX19_06450 0.45 -0.1 223,708 + MPMX19_06450 0.45 +1.1 223,708 + MPMX19_06450 0.45 -0.6 223,708 + MPMX19_06450 0.45 -0.1 223,708 + MPMX19_06450 0.45 +0.8 223,709 - MPMX19_06450 0.45 -0.7 223,709 - MPMX19_06450 0.45 -0.7 223,709 - MPMX19_06450 0.45 -0.7 223,709 - MPMX19_06450 0.45 +0.4 223,709 - MPMX19_06450 0.45 -1.1
Or see this region's nucleotide sequence