Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06426 and MPMX19_06427 are separated by 134 nucleotides MPMX19_06427 and MPMX19_06428 are separated by 544 nucleotides
MPMX19_06426: MPMX19_06426 - hypothetical protein, at 198,784 to 199,110
_06426
MPMX19_06427: MPMX19_06427 - hypothetical protein, at 199,245 to 200,249
_06427
MPMX19_06428: MPMX19_06428 - hypothetical protein, at 200,794 to 201,204
_06428
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 198.304 kb on + strand at 198.305 kb on - strand at 198.305 kb on - strand at 198.436 kb on + strand at 198.436 kb on + strand at 198.436 kb on + strand at 198.437 kb on - strand at 198.737 kb on + strand at 198.737 kb on + strand at 198.738 kb on - strand at 198.738 kb on - strand at 198.759 kb on + strand at 198.760 kb on - strand at 199.009 kb on - strand, within MPMX19_06426 at 199.038 kb on + strand, within MPMX19_06426 at 199.038 kb on + strand, within MPMX19_06426 at 199.038 kb on + strand, within MPMX19_06426 at 199.038 kb on + strand, within MPMX19_06426 at 199.075 kb on + strand, within MPMX19_06426 at 199.075 kb on + strand, within MPMX19_06426 at 199.075 kb on + strand, within MPMX19_06426 at 199.075 kb on + strand, within MPMX19_06426 at 199.075 kb on + strand, within MPMX19_06426 at 199.076 kb on - strand, within MPMX19_06426 at 199.076 kb on - strand, within MPMX19_06426 at 199.309 kb on + strand at 199.309 kb on + strand at 199.309 kb on + strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.489 kb on + strand, within MPMX19_06427 at 199.491 kb on + strand, within MPMX19_06427 at 199.491 kb on + strand, within MPMX19_06427 at 199.491 kb on + strand, within MPMX19_06427 at 199.491 kb on + strand, within MPMX19_06427 at 199.492 kb on - strand, within MPMX19_06427 at 199.492 kb on - strand, within MPMX19_06427 at 199.594 kb on + strand, within MPMX19_06427 at 199.594 kb on + strand, within MPMX19_06427 at 199.594 kb on + strand, within MPMX19_06427 at 199.595 kb on - strand, within MPMX19_06427 at 199.595 kb on - strand, within MPMX19_06427 at 199.595 kb on - strand, within MPMX19_06427 at 199.595 kb on - strand, within MPMX19_06427 at 199.601 kb on + strand, within MPMX19_06427 at 199.601 kb on + strand, within MPMX19_06427 at 199.601 kb on + strand, within MPMX19_06427 at 199.601 kb on + strand, within MPMX19_06427 at 199.601 kb on + strand, within MPMX19_06427 at 199.602 kb on - strand, within MPMX19_06427 at 199.602 kb on - strand, within MPMX19_06427 at 199.724 kb on + strand, within MPMX19_06427 at 199.724 kb on + strand, within MPMX19_06427 at 199.724 kb on + strand, within MPMX19_06427 at 199.724 kb on + strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.858 kb on + strand, within MPMX19_06427 at 199.858 kb on + strand, within MPMX19_06427 at 199.858 kb on + strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.044 kb on - strand, within MPMX19_06427 at 200.044 kb on - strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.095 kb on - strand, within MPMX19_06427 at 200.095 kb on - strand, within MPMX19_06427 at 200.095 kb on - strand, within MPMX19_06427 at 200.177 kb on - strand at 200.247 kb on + strand at 200.248 kb on - strand at 200.248 kb on - strand at 200.574 kb on - strand at 200.795 kb on + strand at 200.796 kb on - strand at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.246 kb on + strand at 201.246 kb on + strand at 201.246 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 198,304 + +0.6 198,305 - -0.1 198,305 - +0.6 198,436 + +0.9 198,436 + -0.9 198,436 + -0.6 198,437 - -0.1 198,737 + -2.2 198,737 + +0.1 198,738 - +0.3 198,738 - -0.9 198,759 + -1.6 198,760 - +0.3 199,009 - MPMX19_06426 0.69 -2.2 199,038 + MPMX19_06426 0.78 -0.9 199,038 + MPMX19_06426 0.78 -0.3 199,038 + MPMX19_06426 0.78 +0.0 199,038 + MPMX19_06426 0.78 +0.7 199,075 + MPMX19_06426 0.89 -0.3 199,075 + MPMX19_06426 0.89 -0.6 199,075 + MPMX19_06426 0.89 -0.6 199,075 + MPMX19_06426 0.89 +0.1 199,075 + MPMX19_06426 0.89 -0.7 199,076 - MPMX19_06426 0.89 -0.7 199,076 - MPMX19_06426 0.89 +0.5 199,309 + -1.3 199,309 + -0.5 199,309 + +0.5 199,310 - +0.3 199,310 - -1.0 199,310 - -1.5 199,310 - +0.9 199,310 - +0.9 199,310 - +1.6 199,310 - +0.3 199,310 - +0.1 199,489 + MPMX19_06427 0.24 +0.3 199,491 + MPMX19_06427 0.24 -2.0 199,491 + MPMX19_06427 0.24 +0.8 199,491 + MPMX19_06427 0.24 -1.6 199,491 + MPMX19_06427 0.24 +0.5 199,492 - MPMX19_06427 0.25 +1.9 199,492 - MPMX19_06427 0.25 -0.9 199,594 + MPMX19_06427 0.35 +0.6 199,594 + MPMX19_06427 0.35 -0.4 199,594 + MPMX19_06427 0.35 +1.3 199,595 - MPMX19_06427 0.35 -0.3 199,595 - MPMX19_06427 0.35 +0.0 199,595 - MPMX19_06427 0.35 +0.1 199,595 - MPMX19_06427 0.35 -0.4 199,601 + MPMX19_06427 0.35 -1.0 199,601 + MPMX19_06427 0.35 -1.1 199,601 + MPMX19_06427 0.35 +0.3 199,601 + MPMX19_06427 0.35 +1.2 199,601 + MPMX19_06427 0.35 -0.9 199,602 - MPMX19_06427 0.36 +1.1 199,602 - MPMX19_06427 0.36 -0.2 199,724 + MPMX19_06427 0.48 +0.9 199,724 + MPMX19_06427 0.48 +0.1 199,724 + MPMX19_06427 0.48 -1.6 199,724 + MPMX19_06427 0.48 -0.1 199,725 - MPMX19_06427 0.48 -1.3 199,725 - MPMX19_06427 0.48 +1.2 199,725 - MPMX19_06427 0.48 +0.3 199,725 - MPMX19_06427 0.48 -1.6 199,725 - MPMX19_06427 0.48 -0.8 199,725 - MPMX19_06427 0.48 -1.3 199,725 - MPMX19_06427 0.48 +0.5 199,838 + MPMX19_06427 0.59 -0.7 199,838 + MPMX19_06427 0.59 -0.9 199,838 + MPMX19_06427 0.59 -0.6 199,838 + MPMX19_06427 0.59 +0.2 199,838 + MPMX19_06427 0.59 -0.9 199,838 + MPMX19_06427 0.59 -0.9 199,838 + MPMX19_06427 0.59 +0.1 199,839 - MPMX19_06427 0.59 +0.1 199,839 - MPMX19_06427 0.59 +0.3 199,839 - MPMX19_06427 0.59 +0.3 199,839 - MPMX19_06427 0.59 +0.1 199,839 - MPMX19_06427 0.59 +0.7 199,839 - MPMX19_06427 0.59 +0.3 199,839 - MPMX19_06427 0.59 +0.3 199,839 - MPMX19_06427 0.59 -0.1 199,839 - MPMX19_06427 0.59 -1.0 199,858 + MPMX19_06427 0.61 +0.5 199,858 + MPMX19_06427 0.61 +1.2 199,858 + MPMX19_06427 0.61 +0.3 199,859 - MPMX19_06427 0.61 -0.7 199,859 - MPMX19_06427 0.61 -0.6 199,859 - MPMX19_06427 0.61 -1.0 199,859 - MPMX19_06427 0.61 -0.2 199,859 - MPMX19_06427 0.61 -0.9 200,043 + MPMX19_06427 0.79 +0.5 200,043 + MPMX19_06427 0.79 -0.1 200,043 + MPMX19_06427 0.79 +1.5 200,043 + MPMX19_06427 0.79 -0.5 200,043 + MPMX19_06427 0.79 -0.1 200,043 + MPMX19_06427 0.79 -0.5 200,044 - MPMX19_06427 0.80 +0.8 200,044 - MPMX19_06427 0.80 +0.9 200,094 + MPMX19_06427 0.84 +1.9 200,094 + MPMX19_06427 0.84 -1.0 200,094 + MPMX19_06427 0.84 -0.3 200,094 + MPMX19_06427 0.84 +0.9 200,094 + MPMX19_06427 0.84 -0.6 200,094 + MPMX19_06427 0.84 -0.8 200,095 - MPMX19_06427 0.85 -1.6 200,095 - MPMX19_06427 0.85 +1.1 200,095 - MPMX19_06427 0.85 -0.9 200,177 - -0.1 200,247 + -0.6 200,248 - -0.1 200,248 - -1.4 200,574 - -1.8 200,795 + +0.3 200,796 - -0.1 201,027 + MPMX19_06428 0.57 +0.9 201,027 + MPMX19_06428 0.57 +0.3 201,027 + MPMX19_06428 0.57 -1.1 201,027 + MPMX19_06428 0.57 -0.5 201,027 + MPMX19_06428 0.57 -1.2 201,027 + MPMX19_06428 0.57 -0.6 201,027 + MPMX19_06428 0.57 -2.6 201,027 + MPMX19_06428 0.57 -0.9 201,027 + MPMX19_06428 0.57 -1.6 201,027 + MPMX19_06428 0.57 -0.1 201,027 + MPMX19_06428 0.57 +0.3 201,027 + MPMX19_06428 0.57 -0.0 201,027 + MPMX19_06428 0.57 -0.2 201,028 - MPMX19_06428 0.57 +0.7 201,028 - MPMX19_06428 0.57 +0.7 201,028 - MPMX19_06428 0.57 +0.4 201,028 - MPMX19_06428 0.57 +0.9 201,028 - MPMX19_06428 0.57 +0.7 201,047 + MPMX19_06428 0.62 -0.2 201,047 + MPMX19_06428 0.62 -0.7 201,047 + MPMX19_06428 0.62 +0.9 201,047 + MPMX19_06428 0.62 -0.2 201,048 - MPMX19_06428 0.62 -1.0 201,048 - MPMX19_06428 0.62 -0.4 201,048 - MPMX19_06428 0.62 -0.1 201,048 - MPMX19_06428 0.62 -0.8 201,048 - MPMX19_06428 0.62 -1.0 201,246 + -0.1 201,246 + -0.1 201,246 + -0.7
Or see this region's nucleotide sequence