Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06426

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06426 and MPMX19_06427 are separated by 134 nucleotides MPMX19_06426: MPMX19_06426 - hypothetical protein, at 198,784 to 199,110 _06426 MPMX19_06427: MPMX19_06427 - hypothetical protein, at 199,245 to 200,249 _06427 Position (kb) 198 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 197.793 kb on - strandat 197.793 kb on - strandat 197.793 kb on - strandat 197.826 kb on + strandat 197.826 kb on + strandat 197.827 kb on - strandat 197.841 kb on - strandat 197.841 kb on - strandat 198.003 kb on + strandat 198.003 kb on + strandat 198.003 kb on + strandat 198.003 kb on + strandat 198.004 kb on - strandat 198.004 kb on - strandat 198.113 kb on + strandat 198.113 kb on + strandat 198.114 kb on - strandat 198.114 kb on - strandat 198.114 kb on - strandat 198.114 kb on - strandat 198.179 kb on + strandat 198.179 kb on + strandat 198.179 kb on + strandat 198.179 kb on + strandat 198.180 kb on - strandat 198.180 kb on - strandat 198.304 kb on + strandat 198.305 kb on - strandat 198.305 kb on - strandat 198.436 kb on + strandat 198.436 kb on + strandat 198.436 kb on + strandat 198.437 kb on - strandat 198.737 kb on + strandat 198.737 kb on + strandat 198.738 kb on - strandat 198.738 kb on - strandat 198.759 kb on + strandat 198.760 kb on - strandat 199.009 kb on - strand, within MPMX19_06426at 199.038 kb on + strand, within MPMX19_06426at 199.038 kb on + strand, within MPMX19_06426at 199.038 kb on + strand, within MPMX19_06426at 199.038 kb on + strand, within MPMX19_06426at 199.075 kb on + strand, within MPMX19_06426at 199.075 kb on + strand, within MPMX19_06426at 199.075 kb on + strand, within MPMX19_06426at 199.075 kb on + strand, within MPMX19_06426at 199.075 kb on + strand, within MPMX19_06426at 199.076 kb on - strand, within MPMX19_06426at 199.076 kb on - strand, within MPMX19_06426at 199.309 kb on + strandat 199.309 kb on + strandat 199.309 kb on + strandat 199.310 kb on - strandat 199.310 kb on - strandat 199.310 kb on - strandat 199.310 kb on - strandat 199.310 kb on - strandat 199.310 kb on - strandat 199.310 kb on - strandat 199.310 kb on - strandat 199.489 kb on + strand, within MPMX19_06427at 199.491 kb on + strand, within MPMX19_06427at 199.491 kb on + strand, within MPMX19_06427at 199.491 kb on + strand, within MPMX19_06427at 199.491 kb on + strand, within MPMX19_06427at 199.492 kb on - strand, within MPMX19_06427at 199.492 kb on - strand, within MPMX19_06427at 199.594 kb on + strand, within MPMX19_06427at 199.594 kb on + strand, within MPMX19_06427at 199.594 kb on + strand, within MPMX19_06427at 199.595 kb on - strand, within MPMX19_06427at 199.595 kb on - strand, within MPMX19_06427at 199.595 kb on - strand, within MPMX19_06427at 199.595 kb on - strand, within MPMX19_06427at 199.601 kb on + strand, within MPMX19_06427at 199.601 kb on + strand, within MPMX19_06427at 199.601 kb on + strand, within MPMX19_06427at 199.601 kb on + strand, within MPMX19_06427at 199.601 kb on + strand, within MPMX19_06427at 199.602 kb on - strand, within MPMX19_06427at 199.602 kb on - strand, within MPMX19_06427at 199.724 kb on + strand, within MPMX19_06427at 199.724 kb on + strand, within MPMX19_06427at 199.724 kb on + strand, within MPMX19_06427at 199.724 kb on + strand, within MPMX19_06427at 199.725 kb on - strand, within MPMX19_06427at 199.725 kb on - strand, within MPMX19_06427at 199.725 kb on - strand, within MPMX19_06427at 199.725 kb on - strand, within MPMX19_06427at 199.725 kb on - strand, within MPMX19_06427at 199.725 kb on - strand, within MPMX19_06427at 199.725 kb on - strand, within MPMX19_06427at 199.838 kb on + strand, within MPMX19_06427at 199.838 kb on + strand, within MPMX19_06427at 199.838 kb on + strand, within MPMX19_06427at 199.838 kb on + strand, within MPMX19_06427at 199.838 kb on + strand, within MPMX19_06427at 199.838 kb on + strand, within MPMX19_06427at 199.838 kb on + strand, within MPMX19_06427at 199.839 kb on - strand, within MPMX19_06427at 199.839 kb on - strand, within MPMX19_06427at 199.839 kb on - strand, within MPMX19_06427at 199.839 kb on - strand, within MPMX19_06427at 199.839 kb on - strand, within MPMX19_06427at 199.839 kb on - strand, within MPMX19_06427at 199.839 kb on - strand, within MPMX19_06427at 199.839 kb on - strand, within MPMX19_06427at 199.839 kb on - strand, within MPMX19_06427at 199.858 kb on + strand, within MPMX19_06427at 199.858 kb on + strand, within MPMX19_06427at 199.858 kb on + strand, within MPMX19_06427at 199.859 kb on - strand, within MPMX19_06427at 199.859 kb on - strand, within MPMX19_06427at 199.859 kb on - strand, within MPMX19_06427at 199.859 kb on - strand, within MPMX19_06427at 199.859 kb on - strand, within MPMX19_06427at 200.043 kb on + strand, within MPMX19_06427at 200.043 kb on + strand, within MPMX19_06427at 200.043 kb on + strand, within MPMX19_06427at 200.043 kb on + strand, within MPMX19_06427at 200.043 kb on + strand, within MPMX19_06427at 200.043 kb on + strand, within MPMX19_06427at 200.044 kb on - strand, within MPMX19_06427at 200.044 kb on - strand, within MPMX19_06427at 200.094 kb on + strand, within MPMX19_06427at 200.094 kb on + strand, within MPMX19_06427at 200.094 kb on + strand, within MPMX19_06427at 200.094 kb on + strand, within MPMX19_06427at 200.094 kb on + strand, within MPMX19_06427at 200.094 kb on + strand, within MPMX19_06427at 200.095 kb on - strand, within MPMX19_06427at 200.095 kb on - strand, within MPMX19_06427at 200.095 kb on - strand, within MPMX19_06427

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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197,793 - -0.4
197,793 - -0.4
197,793 - +0.3
197,826 + -0.3
197,826 + -0.1
197,827 - +0.1
197,841 - -0.4
197,841 - +0.2
198,003 + -0.9
198,003 + +0.1
198,003 + -0.4
198,003 + +0.5
198,004 - +0.7
198,004 - -0.4
198,113 + -0.0
198,113 + -0.6
198,114 - +0.4
198,114 - -1.3
198,114 - -3.0
198,114 - -1.1
198,179 + -0.4
198,179 + +0.3
198,179 + -0.3
198,179 + -0.1
198,180 - -1.3
198,180 - +0.4
198,304 + +0.6
198,305 - -0.1
198,305 - +0.6
198,436 + +0.9
198,436 + -0.9
198,436 + -0.6
198,437 - -0.1
198,737 + -2.2
198,737 + +0.1
198,738 - +0.3
198,738 - -0.9
198,759 + -1.6
198,760 - +0.3
199,009 - MPMX19_06426 0.69 -2.2
199,038 + MPMX19_06426 0.78 -0.9
199,038 + MPMX19_06426 0.78 -0.3
199,038 + MPMX19_06426 0.78 +0.0
199,038 + MPMX19_06426 0.78 +0.7
199,075 + MPMX19_06426 0.89 -0.3
199,075 + MPMX19_06426 0.89 -0.6
199,075 + MPMX19_06426 0.89 -0.6
199,075 + MPMX19_06426 0.89 +0.1
199,075 + MPMX19_06426 0.89 -0.7
199,076 - MPMX19_06426 0.89 -0.7
199,076 - MPMX19_06426 0.89 +0.5
199,309 + -1.3
199,309 + -0.5
199,309 + +0.5
199,310 - +0.3
199,310 - -1.0
199,310 - -1.5
199,310 - +0.9
199,310 - +0.9
199,310 - +1.6
199,310 - +0.3
199,310 - +0.1
199,489 + MPMX19_06427 0.24 +0.3
199,491 + MPMX19_06427 0.24 -2.0
199,491 + MPMX19_06427 0.24 +0.8
199,491 + MPMX19_06427 0.24 -1.6
199,491 + MPMX19_06427 0.24 +0.5
199,492 - MPMX19_06427 0.25 +1.9
199,492 - MPMX19_06427 0.25 -0.9
199,594 + MPMX19_06427 0.35 +0.6
199,594 + MPMX19_06427 0.35 -0.4
199,594 + MPMX19_06427 0.35 +1.3
199,595 - MPMX19_06427 0.35 -0.3
199,595 - MPMX19_06427 0.35 +0.0
199,595 - MPMX19_06427 0.35 +0.1
199,595 - MPMX19_06427 0.35 -0.4
199,601 + MPMX19_06427 0.35 -1.0
199,601 + MPMX19_06427 0.35 -1.1
199,601 + MPMX19_06427 0.35 +0.3
199,601 + MPMX19_06427 0.35 +1.2
199,601 + MPMX19_06427 0.35 -0.9
199,602 - MPMX19_06427 0.36 +1.1
199,602 - MPMX19_06427 0.36 -0.2
199,724 + MPMX19_06427 0.48 +0.9
199,724 + MPMX19_06427 0.48 +0.1
199,724 + MPMX19_06427 0.48 -1.6
199,724 + MPMX19_06427 0.48 -0.1
199,725 - MPMX19_06427 0.48 -1.3
199,725 - MPMX19_06427 0.48 +1.2
199,725 - MPMX19_06427 0.48 +0.3
199,725 - MPMX19_06427 0.48 -1.6
199,725 - MPMX19_06427 0.48 -0.8
199,725 - MPMX19_06427 0.48 -1.3
199,725 - MPMX19_06427 0.48 +0.5
199,838 + MPMX19_06427 0.59 -0.7
199,838 + MPMX19_06427 0.59 -0.9
199,838 + MPMX19_06427 0.59 -0.6
199,838 + MPMX19_06427 0.59 +0.2
199,838 + MPMX19_06427 0.59 -0.9
199,838 + MPMX19_06427 0.59 -0.9
199,838 + MPMX19_06427 0.59 +0.1
199,839 - MPMX19_06427 0.59 +0.1
199,839 - MPMX19_06427 0.59 +0.3
199,839 - MPMX19_06427 0.59 +0.3
199,839 - MPMX19_06427 0.59 +0.1
199,839 - MPMX19_06427 0.59 +0.7
199,839 - MPMX19_06427 0.59 +0.3
199,839 - MPMX19_06427 0.59 +0.3
199,839 - MPMX19_06427 0.59 -0.1
199,839 - MPMX19_06427 0.59 -1.0
199,858 + MPMX19_06427 0.61 +0.5
199,858 + MPMX19_06427 0.61 +1.2
199,858 + MPMX19_06427 0.61 +0.3
199,859 - MPMX19_06427 0.61 -0.7
199,859 - MPMX19_06427 0.61 -0.6
199,859 - MPMX19_06427 0.61 -1.0
199,859 - MPMX19_06427 0.61 -0.2
199,859 - MPMX19_06427 0.61 -0.9
200,043 + MPMX19_06427 0.79 +0.5
200,043 + MPMX19_06427 0.79 -0.1
200,043 + MPMX19_06427 0.79 +1.5
200,043 + MPMX19_06427 0.79 -0.5
200,043 + MPMX19_06427 0.79 -0.1
200,043 + MPMX19_06427 0.79 -0.5
200,044 - MPMX19_06427 0.80 +0.8
200,044 - MPMX19_06427 0.80 +0.9
200,094 + MPMX19_06427 0.84 +1.9
200,094 + MPMX19_06427 0.84 -1.0
200,094 + MPMX19_06427 0.84 -0.3
200,094 + MPMX19_06427 0.84 +0.9
200,094 + MPMX19_06427 0.84 -0.6
200,094 + MPMX19_06427 0.84 -0.8
200,095 - MPMX19_06427 0.85 -1.6
200,095 - MPMX19_06427 0.85 +1.1
200,095 - MPMX19_06427 0.85 -0.9

Or see this region's nucleotide sequence