Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06368 and MPMX19_06369 are separated by 130 nucleotides MPMX19_06369 and MPMX19_06370 are separated by 29 nucleotides MPMX19_06370 and MPMX19_06371 overlap by 46 nucleotides
MPMX19_06368: MPMX19_06368 - 34 kDa membrane antigen, at 136,616 to 137,116
_06368
MPMX19_06369: MPMX19_06369 - hypothetical protein, at 137,247 to 137,474
_06369
MPMX19_06370: MPMX19_06370 - hypothetical protein, at 137,504 to 138,337
_06370
MPMX19_06371: MPMX19_06371 - hypothetical protein, at 138,292 to 139,707
_06371
Position (kb) 137
138
139 Strain fitness (log2 ratio) -2
-1
0
1 at 136.507 kb on + strand at 136.507 kb on + strand at 136.508 kb on - strand at 136.508 kb on - strand at 136.508 kb on - strand at 136.508 kb on - strand at 136.508 kb on - strand at 136.508 kb on - strand at 136.509 kb on + strand at 136.509 kb on + strand at 136.510 kb on - strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.585 kb on + strand at 136.585 kb on + strand at 136.586 kb on - strand at 136.586 kb on - strand at 136.586 kb on - strand at 136.586 kb on - strand at 136.586 kb on - strand at 136.586 kb on - strand at 136.649 kb on + strand at 136.649 kb on + strand at 136.660 kb on + strand at 136.660 kb on + strand at 136.660 kb on + strand at 136.661 kb on - strand at 136.700 kb on + strand, within MPMX19_06368 at 136.700 kb on + strand, within MPMX19_06368 at 136.700 kb on + strand, within MPMX19_06368 at 136.700 kb on + strand, within MPMX19_06368 at 136.700 kb on + strand, within MPMX19_06368 at 136.700 kb on + strand, within MPMX19_06368 at 136.700 kb on + strand, within MPMX19_06368 at 136.701 kb on - strand, within MPMX19_06368 at 136.701 kb on - strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.780 kb on - strand, within MPMX19_06368 at 136.780 kb on - strand, within MPMX19_06368 at 136.780 kb on - strand, within MPMX19_06368 at 136.780 kb on - strand, within MPMX19_06368 at 136.780 kb on - strand, within MPMX19_06368 at 136.780 kb on - strand, within MPMX19_06368 at 136.847 kb on + strand, within MPMX19_06368 at 136.847 kb on + strand, within MPMX19_06368 at 136.847 kb on + strand, within MPMX19_06368 at 136.847 kb on + strand, within MPMX19_06368 at 136.848 kb on - strand, within MPMX19_06368 at 136.848 kb on - strand, within MPMX19_06368 at 136.848 kb on - strand, within MPMX19_06368 at 136.867 kb on + strand, within MPMX19_06368 at 136.867 kb on + strand, within MPMX19_06368 at 136.868 kb on - strand, within MPMX19_06368 at 136.891 kb on + strand, within MPMX19_06368 at 136.891 kb on + strand, within MPMX19_06368 at 136.892 kb on - strand, within MPMX19_06368 at 136.892 kb on - strand, within MPMX19_06368 at 136.923 kb on - strand, within MPMX19_06368 at 136.959 kb on - strand, within MPMX19_06368 at 136.959 kb on - strand, within MPMX19_06368 at 136.959 kb on - strand, within MPMX19_06368 at 136.959 kb on - strand, within MPMX19_06368 at 136.959 kb on - strand, within MPMX19_06368 at 137.073 kb on - strand at 137.084 kb on + strand at 137.098 kb on + strand at 137.111 kb on + strand at 137.111 kb on + strand at 137.111 kb on + strand at 137.114 kb on + strand at 137.114 kb on + strand at 137.114 kb on + strand at 137.114 kb on + strand at 137.115 kb on - strand at 137.115 kb on - strand at 137.117 kb on + strand at 137.117 kb on + strand at 137.118 kb on - strand at 137.118 kb on - strand at 137.167 kb on + strand at 137.167 kb on + strand at 137.472 kb on + strand at 137.472 kb on + strand at 137.472 kb on + strand at 137.473 kb on - strand at 137.507 kb on + strand at 137.507 kb on + strand at 137.508 kb on - strand at 137.508 kb on - strand at 137.508 kb on - strand at 137.866 kb on + strand, within MPMX19_06370 at 137.921 kb on + strand, within MPMX19_06370 at 137.931 kb on + strand, within MPMX19_06370 at 138.004 kb on + strand, within MPMX19_06370 at 138.004 kb on + strand, within MPMX19_06370 at 138.004 kb on + strand, within MPMX19_06370 at 138.004 kb on + strand, within MPMX19_06370 at 138.005 kb on - strand, within MPMX19_06370 at 138.005 kb on - strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.009 kb on - strand, within MPMX19_06370 at 138.009 kb on - strand, within MPMX19_06370 at 138.009 kb on - strand, within MPMX19_06370 at 138.009 kb on - strand, within MPMX19_06370 at 138.183 kb on + strand, within MPMX19_06370 at 138.183 kb on + strand, within MPMX19_06370 at 138.183 kb on + strand, within MPMX19_06370 at 138.183 kb on + strand, within MPMX19_06370 at 138.184 kb on - strand, within MPMX19_06370 at 138.231 kb on - strand, within MPMX19_06370 at 138.275 kb on + strand at 138.276 kb on - strand at 138.276 kb on - strand at 138.291 kb on + strand at 138.291 kb on + strand at 138.291 kb on + strand at 138.291 kb on + strand at 138.292 kb on - strand at 138.292 kb on - strand at 138.292 kb on - strand at 138.292 kb on - strand at 138.421 kb on + strand at 138.421 kb on + strand at 138.421 kb on + strand at 138.421 kb on + strand at 138.421 kb on + strand at 138.421 kb on + strand at 138.421 kb on + strand at 138.421 kb on + strand at 138.421 kb on + strand at 138.421 kb on + strand at 138.421 kb on + strand at 138.421 kb on + strand at 138.421 kb on + strand at 138.422 kb on - strand at 138.422 kb on - strand at 138.422 kb on - strand at 138.422 kb on - strand at 138.422 kb on - strand at 138.422 kb on - strand at 138.422 kb on - strand at 138.422 kb on - strand at 138.422 kb on - strand at 138.422 kb on - strand at 138.432 kb on + strand at 138.432 kb on + strand at 138.432 kb on + strand at 138.432 kb on + strand at 138.432 kb on + strand at 138.432 kb on + strand at 138.432 kb on + strand at 138.432 kb on + strand at 138.433 kb on - strand at 138.433 kb on - strand at 138.433 kb on - strand at 138.433 kb on - strand at 138.543 kb on - strand, within MPMX19_06371 at 138.543 kb on - strand, within MPMX19_06371 at 138.543 kb on - strand, within MPMX19_06371 at 138.543 kb on - strand, within MPMX19_06371 at 138.543 kb on - strand, within MPMX19_06371 at 138.543 kb on - strand, within MPMX19_06371 at 138.543 kb on - strand, within MPMX19_06371 at 138.543 kb on - strand, within MPMX19_06371 at 138.543 kb on - strand, within MPMX19_06371 at 138.543 kb on - strand, within MPMX19_06371 at 138.543 kb on - strand, within MPMX19_06371 at 138.543 kb on - strand, within MPMX19_06371 at 139.164 kb on + strand, within MPMX19_06371 at 139.164 kb on + strand, within MPMX19_06371 at 139.164 kb on + strand, within MPMX19_06371 at 139.164 kb on + strand, within MPMX19_06371 at 139.164 kb on + strand, within MPMX19_06371 at 139.164 kb on + strand, within MPMX19_06371 at 139.165 kb on - strand, within MPMX19_06371 at 139.165 kb on - strand, within MPMX19_06371 at 139.165 kb on - strand, within MPMX19_06371 at 139.165 kb on - strand, within MPMX19_06371 at 139.165 kb on - strand, within MPMX19_06371
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 136,507 + -0.1 136,507 + +0.3 136,508 - -0.2 136,508 - -0.7 136,508 - -0.6 136,508 - +0.7 136,508 - -1.7 136,508 - -1.3 136,509 + +1.2 136,509 + -0.2 136,510 - +0.2 136,578 + +0.1 136,578 + -0.1 136,578 + -1.6 136,578 + -2.0 136,578 + -0.4 136,578 + -1.1 136,578 + +0.7 136,578 + +0.9 136,579 - -1.7 136,579 - -0.2 136,579 - -0.6 136,579 - -1.7 136,579 - +0.9 136,579 - -1.3 136,579 - -1.9 136,579 - -0.7 136,579 - -0.3 136,585 + +0.8 136,585 + +0.6 136,586 - -1.1 136,586 - +0.9 136,586 - -0.1 136,586 - -1.2 136,586 - +0.6 136,586 - +0.5 136,649 + +1.0 136,649 + +0.3 136,660 + -0.6 136,660 + +0.4 136,660 + +0.6 136,661 - +0.1 136,700 + MPMX19_06368 0.17 -1.2 136,700 + MPMX19_06368 0.17 +0.8 136,700 + MPMX19_06368 0.17 +0.0 136,700 + MPMX19_06368 0.17 +0.3 136,700 + MPMX19_06368 0.17 -2.6 136,700 + MPMX19_06368 0.17 -0.3 136,700 + MPMX19_06368 0.17 -0.9 136,701 - MPMX19_06368 0.17 +0.4 136,701 - MPMX19_06368 0.17 +0.1 136,779 + MPMX19_06368 0.33 +0.0 136,779 + MPMX19_06368 0.33 -1.0 136,779 + MPMX19_06368 0.33 -0.5 136,779 + MPMX19_06368 0.33 +0.7 136,779 + MPMX19_06368 0.33 -1.2 136,779 + MPMX19_06368 0.33 -1.7 136,779 + MPMX19_06368 0.33 -1.9 136,779 + MPMX19_06368 0.33 -0.2 136,779 + MPMX19_06368 0.33 -0.7 136,780 - MPMX19_06368 0.33 -1.3 136,780 - MPMX19_06368 0.33 +0.6 136,780 - MPMX19_06368 0.33 -0.7 136,780 - MPMX19_06368 0.33 +0.4 136,780 - MPMX19_06368 0.33 -1.4 136,780 - MPMX19_06368 0.33 -0.5 136,847 + MPMX19_06368 0.46 +0.1 136,847 + MPMX19_06368 0.46 -1.0 136,847 + MPMX19_06368 0.46 +0.0 136,847 + MPMX19_06368 0.46 +0.8 136,848 - MPMX19_06368 0.46 -0.0 136,848 - MPMX19_06368 0.46 -1.3 136,848 - MPMX19_06368 0.46 -0.4 136,867 + MPMX19_06368 0.50 +0.3 136,867 + MPMX19_06368 0.50 +0.6 136,868 - MPMX19_06368 0.50 -2.2 136,891 + MPMX19_06368 0.55 -1.4 136,891 + MPMX19_06368 0.55 -0.9 136,892 - MPMX19_06368 0.55 +0.7 136,892 - MPMX19_06368 0.55 -0.7 136,923 - MPMX19_06368 0.61 +0.1 136,959 - MPMX19_06368 0.68 +0.4 136,959 - MPMX19_06368 0.68 -0.3 136,959 - MPMX19_06368 0.68 -0.6 136,959 - MPMX19_06368 0.68 +0.1 136,959 - MPMX19_06368 0.68 -0.1 137,073 - -1.4 137,084 + -0.6 137,098 + +0.3 137,111 + -0.6 137,111 + +0.6 137,111 + +0.1 137,114 + +0.7 137,114 + -0.1 137,114 + +0.6 137,114 + +0.9 137,115 - -0.8 137,115 - +1.0 137,117 + +0.3 137,117 + -1.1 137,118 - +1.0 137,118 - -2.1 137,167 + +0.7 137,167 + -0.1 137,472 + -0.1 137,472 + -1.3 137,472 + -1.8 137,473 - -1.8 137,507 + -1.8 137,507 + -0.4 137,508 - -0.2 137,508 - -0.5 137,508 - +0.6 137,866 + MPMX19_06370 0.43 -1.4 137,921 + MPMX19_06370 0.50 +0.1 137,931 + MPMX19_06370 0.51 -0.3 138,004 + MPMX19_06370 0.60 -0.9 138,004 + MPMX19_06370 0.60 +0.6 138,004 + MPMX19_06370 0.60 -0.1 138,004 + MPMX19_06370 0.60 +0.2 138,005 - MPMX19_06370 0.60 -1.3 138,005 - MPMX19_06370 0.60 -1.6 138,008 + MPMX19_06370 0.60 +0.2 138,008 + MPMX19_06370 0.60 +0.3 138,008 + MPMX19_06370 0.60 -2.6 138,008 + MPMX19_06370 0.60 +0.4 138,008 + MPMX19_06370 0.60 -0.4 138,008 + MPMX19_06370 0.60 +1.2 138,008 + MPMX19_06370 0.60 -0.1 138,008 + MPMX19_06370 0.60 -0.1 138,008 + MPMX19_06370 0.60 -1.3 138,008 + MPMX19_06370 0.60 -1.7 138,008 + MPMX19_06370 0.60 -1.0 138,008 + MPMX19_06370 0.60 +0.0 138,008 + MPMX19_06370 0.60 -0.0 138,009 - MPMX19_06370 0.61 -0.7 138,009 - MPMX19_06370 0.61 -2.0 138,009 - MPMX19_06370 0.61 +0.0 138,009 - MPMX19_06370 0.61 -0.4 138,183 + MPMX19_06370 0.81 +0.1 138,183 + MPMX19_06370 0.81 -1.6 138,183 + MPMX19_06370 0.81 -0.1 138,183 + MPMX19_06370 0.81 -2.1 138,184 - MPMX19_06370 0.82 +0.2 138,231 - MPMX19_06370 0.87 -1.3 138,275 + +0.7 138,276 - -0.7 138,276 - +0.9 138,291 + -0.1 138,291 + -0.1 138,291 + -1.6 138,291 + -0.6 138,292 - -1.1 138,292 - -1.3 138,292 - -2.0 138,292 - -1.9 138,421 + -0.1 138,421 + -0.6 138,421 + -2.3 138,421 + -0.9 138,421 + -0.1 138,421 + +1.4 138,421 + -1.6 138,421 + -0.2 138,421 + -1.2 138,421 + -1.7 138,421 + -0.1 138,421 + +0.8 138,421 + -0.2 138,422 - -1.3 138,422 - -0.5 138,422 - +0.3 138,422 - -0.9 138,422 - -1.9 138,422 - -0.6 138,422 - +0.7 138,422 - -0.9 138,422 - -1.7 138,422 - -0.9 138,432 + -0.7 138,432 + +0.7 138,432 + -0.1 138,432 + +0.9 138,432 + -0.1 138,432 + -1.0 138,432 + -0.1 138,432 + -0.7 138,433 - -0.6 138,433 - +0.3 138,433 - -1.2 138,433 - -1.4 138,543 - MPMX19_06371 0.18 +0.5 138,543 - MPMX19_06371 0.18 -0.2 138,543 - MPMX19_06371 0.18 -1.3 138,543 - MPMX19_06371 0.18 +1.4 138,543 - MPMX19_06371 0.18 -1.0 138,543 - MPMX19_06371 0.18 +0.2 138,543 - MPMX19_06371 0.18 +0.2 138,543 - MPMX19_06371 0.18 +0.1 138,543 - MPMX19_06371 0.18 -0.1 138,543 - MPMX19_06371 0.18 -1.5 138,543 - MPMX19_06371 0.18 -1.4 138,543 - MPMX19_06371 0.18 -0.9 139,164 + MPMX19_06371 0.62 -1.3 139,164 + MPMX19_06371 0.62 +0.3 139,164 + MPMX19_06371 0.62 -0.9 139,164 + MPMX19_06371 0.62 -0.7 139,164 + MPMX19_06371 0.62 +1.4 139,164 + MPMX19_06371 0.62 +0.3 139,165 - MPMX19_06371 0.62 -0.8 139,165 - MPMX19_06371 0.62 +0.9 139,165 - MPMX19_06371 0.62 +1.1 139,165 - MPMX19_06371 0.62 -1.2 139,165 - MPMX19_06371 0.62 -0.4
Or see this region's nucleotide sequence