Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06345

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06343 and MPMX19_06344 are separated by 40 nucleotidesMPMX19_06344 and MPMX19_06345 are separated by 313 nucleotidesMPMX19_06345 and MPMX19_06346 are separated by 18 nucleotides MPMX19_06343: MPMX19_06343 - Acetyl-CoA acetyltransferase, at 109,346 to 110,533 _06343 MPMX19_06344: MPMX19_06344 - hypothetical protein, at 110,574 to 110,780 _06344 MPMX19_06345: MPMX19_06345 - Pyruvate synthase subunit PorC, at 111,094 to 111,651 _06345 MPMX19_06346: MPMX19_06346 - Pyruvate synthase subunit PorA, at 111,670 to 112,917 _06346 Position (kb) 111 112Strain fitness (log2 ratio) -2 -1 0 1at 110.183 kb on + strand, within MPMX19_06343at 110.183 kb on + strand, within MPMX19_06343at 110.183 kb on + strand, within MPMX19_06343at 110.183 kb on + strand, within MPMX19_06343at 110.183 kb on + strand, within MPMX19_06343at 110.183 kb on + strand, within MPMX19_06343at 110.183 kb on + strand, within MPMX19_06343at 110.183 kb on + strand, within MPMX19_06343at 110.183 kb on + strand, within MPMX19_06343at 110.183 kb on + strand, within MPMX19_06343at 110.183 kb on + strand, within MPMX19_06343at 110.183 kb on + strand, within MPMX19_06343at 110.184 kb on - strand, within MPMX19_06343at 110.184 kb on - strand, within MPMX19_06343at 110.184 kb on - strand, within MPMX19_06343at 110.184 kb on - strand, within MPMX19_06343at 110.184 kb on - strand, within MPMX19_06343at 110.184 kb on - strand, within MPMX19_06343at 110.184 kb on - strand, within MPMX19_06343at 110.184 kb on - strand, within MPMX19_06343at 110.188 kb on + strand, within MPMX19_06343at 110.188 kb on + strand, within MPMX19_06343at 110.189 kb on - strand, within MPMX19_06343at 110.573 kb on + strandat 110.573 kb on + strandat 110.573 kb on + strandat 110.573 kb on + strandat 110.573 kb on + strandat 110.573 kb on + strandat 110.573 kb on + strandat 110.574 kb on - strandat 110.574 kb on - strandat 110.574 kb on - strandat 110.574 kb on - strandat 110.574 kb on - strandat 110.574 kb on - strandat 110.574 kb on - strandat 110.574 kb on - strandat 110.574 kb on - strandat 110.937 kb on + strandat 111.061 kb on + strandat 111.110 kb on + strandat 111.110 kb on + strandat 111.111 kb on - strandat 111.330 kb on + strand, within MPMX19_06345at 111.331 kb on - strand, within MPMX19_06345at 111.367 kb on + strand, within MPMX19_06345at 111.367 kb on + strand, within MPMX19_06345at 111.367 kb on + strand, within MPMX19_06345at 111.368 kb on - strand, within MPMX19_06345at 111.368 kb on - strand, within MPMX19_06345at 111.368 kb on - strand, within MPMX19_06345at 111.368 kb on - strand, within MPMX19_06345at 111.368 kb on - strand, within MPMX19_06345at 111.368 kb on - strand, within MPMX19_06345at 111.377 kb on + strand, within MPMX19_06345at 111.377 kb on + strand, within MPMX19_06345at 111.377 kb on + strand, within MPMX19_06345at 111.377 kb on + strand, within MPMX19_06345at 111.378 kb on - strand, within MPMX19_06345at 111.378 kb on - strand, within MPMX19_06345at 111.631 kb on + strandat 111.632 kb on - strandat 111.712 kb on - strandat 111.895 kb on + strand, within MPMX19_06346at 111.895 kb on + strand, within MPMX19_06346at 111.895 kb on + strand, within MPMX19_06346at 111.896 kb on - strand, within MPMX19_06346at 111.896 kb on - strand, within MPMX19_06346at 111.896 kb on - strand, within MPMX19_06346at 111.896 kb on - strand, within MPMX19_06346at 111.896 kb on - strand, within MPMX19_06346at 111.943 kb on + strand, within MPMX19_06346at 111.943 kb on + strand, within MPMX19_06346at 111.943 kb on + strand, within MPMX19_06346at 111.943 kb on + strand, within MPMX19_06346at 111.943 kb on + strand, within MPMX19_06346at 112.324 kb on + strand, within MPMX19_06346at 112.325 kb on - strand, within MPMX19_06346at 112.466 kb on + strand, within MPMX19_06346at 112.467 kb on - strand, within MPMX19_06346at 112.467 kb on - strand, within MPMX19_06346at 112.467 kb on - strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.596 kb on + strand, within MPMX19_06346at 112.597 kb on - strand, within MPMX19_06346

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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110,183 + MPMX19_06343 0.70 +0.7
110,183 + MPMX19_06343 0.70 -1.4
110,183 + MPMX19_06343 0.70 -0.9
110,183 + MPMX19_06343 0.70 -0.9
110,183 + MPMX19_06343 0.70 +0.1
110,183 + MPMX19_06343 0.70 +0.6
110,183 + MPMX19_06343 0.70 -1.4
110,183 + MPMX19_06343 0.70 -0.0
110,183 + MPMX19_06343 0.70 +0.2
110,183 + MPMX19_06343 0.70 -0.4
110,183 + MPMX19_06343 0.70 -1.8
110,183 + MPMX19_06343 0.70 -0.8
110,184 - MPMX19_06343 0.71 -1.1
110,184 - MPMX19_06343 0.71 +0.3
110,184 - MPMX19_06343 0.71 -0.0
110,184 - MPMX19_06343 0.71 +1.2
110,184 - MPMX19_06343 0.71 +0.1
110,184 - MPMX19_06343 0.71 -0.0
110,184 - MPMX19_06343 0.71 +0.4
110,184 - MPMX19_06343 0.71 -1.6
110,188 + MPMX19_06343 0.71 +0.9
110,188 + MPMX19_06343 0.71 -0.6
110,189 - MPMX19_06343 0.71 -0.7
110,573 + +0.4
110,573 + -0.7
110,573 + -0.2
110,573 + -0.3
110,573 + -1.5
110,573 + -1.7
110,573 + -1.9
110,574 - -0.1
110,574 - +0.2
110,574 - -0.9
110,574 - +0.2
110,574 - -0.6
110,574 - -0.2
110,574 - -0.1
110,574 - -1.1
110,574 - -0.6
110,937 + -0.3
111,061 + -0.4
111,110 + +0.1
111,110 + -1.6
111,111 - -0.4
111,330 + MPMX19_06345 0.42 +0.0
111,331 - MPMX19_06345 0.42 -0.2
111,367 + MPMX19_06345 0.49 +0.1
111,367 + MPMX19_06345 0.49 -0.3
111,367 + MPMX19_06345 0.49 +0.3
111,368 - MPMX19_06345 0.49 -0.2
111,368 - MPMX19_06345 0.49 +0.2
111,368 - MPMX19_06345 0.49 -0.8
111,368 - MPMX19_06345 0.49 +0.3
111,368 - MPMX19_06345 0.49 +0.1
111,368 - MPMX19_06345 0.49 +0.8
111,377 + MPMX19_06345 0.51 +0.3
111,377 + MPMX19_06345 0.51 +0.5
111,377 + MPMX19_06345 0.51 +0.3
111,377 + MPMX19_06345 0.51 +0.7
111,378 - MPMX19_06345 0.51 +0.3
111,378 - MPMX19_06345 0.51 -0.4
111,631 + +0.6
111,632 - -0.5
111,712 - +0.2
111,895 + MPMX19_06346 0.18 -0.6
111,895 + MPMX19_06346 0.18 +1.4
111,895 + MPMX19_06346 0.18 -0.6
111,896 - MPMX19_06346 0.18 -0.6
111,896 - MPMX19_06346 0.18 +0.7
111,896 - MPMX19_06346 0.18 -1.2
111,896 - MPMX19_06346 0.18 -0.7
111,896 - MPMX19_06346 0.18 +0.2
111,943 + MPMX19_06346 0.22 +0.5
111,943 + MPMX19_06346 0.22 -0.0
111,943 + MPMX19_06346 0.22 +1.0
111,943 + MPMX19_06346 0.22 +1.5
111,943 + MPMX19_06346 0.22 -0.8
112,324 + MPMX19_06346 0.52 -1.6
112,325 - MPMX19_06346 0.52 +0.3
112,466 + MPMX19_06346 0.64 +0.0
112,467 - MPMX19_06346 0.64 +1.1
112,467 - MPMX19_06346 0.64 +0.4
112,467 - MPMX19_06346 0.64 -1.4
112,591 + MPMX19_06346 0.74 -0.1
112,591 + MPMX19_06346 0.74 -0.7
112,591 + MPMX19_06346 0.74 -2.3
112,591 + MPMX19_06346 0.74 +0.3
112,591 + MPMX19_06346 0.74 +0.1
112,591 + MPMX19_06346 0.74 -0.4
112,591 + MPMX19_06346 0.74 -1.1
112,591 + MPMX19_06346 0.74 -1.7
112,591 + MPMX19_06346 0.74 +0.1
112,592 - MPMX19_06346 0.74 -1.1
112,592 - MPMX19_06346 0.74 +0.3
112,592 - MPMX19_06346 0.74 -0.1
112,592 - MPMX19_06346 0.74 +0.9
112,592 - MPMX19_06346 0.74 -0.1
112,592 - MPMX19_06346 0.74 +0.9
112,592 - MPMX19_06346 0.74 +1.3
112,592 - MPMX19_06346 0.74 +0.6
112,592 - MPMX19_06346 0.74 -0.3
112,592 - MPMX19_06346 0.74 +0.7
112,592 - MPMX19_06346 0.74 -0.0
112,592 - MPMX19_06346 0.74 -0.7
112,592 - MPMX19_06346 0.74 -0.0
112,596 + MPMX19_06346 0.74 -1.1
112,597 - MPMX19_06346 0.74 -0.1

Or see this region's nucleotide sequence