Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06233

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06232 and MPMX19_06233 are separated by 158 nucleotidesMPMX19_06233 and MPMX19_06234 are separated by 31 nucleotides MPMX19_06232: MPMX19_06232 - Pyruvate/proton symporter BtsT, at 420,879 to 422,684 _06232 MPMX19_06233: MPMX19_06233 - putative oxidoreductase YgfF, at 422,843 to 423,604 _06233 MPMX19_06234: MPMX19_06234 - hypothetical protein, at 423,636 to 424,832 _06234 Position (kb) 422 423 424Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 421.942 kb on + strand, within MPMX19_06232at 421.942 kb on + strand, within MPMX19_06232at 421.942 kb on + strand, within MPMX19_06232at 421.943 kb on - strand, within MPMX19_06232at 421.996 kb on + strand, within MPMX19_06232at 421.996 kb on + strand, within MPMX19_06232at 421.996 kb on + strand, within MPMX19_06232at 421.996 kb on + strand, within MPMX19_06232at 421.996 kb on + strand, within MPMX19_06232at 421.996 kb on + strand, within MPMX19_06232at 421.996 kb on + strand, within MPMX19_06232at 421.997 kb on - strand, within MPMX19_06232at 421.997 kb on - strand, within MPMX19_06232at 421.997 kb on - strand, within MPMX19_06232at 421.997 kb on - strand, within MPMX19_06232at 421.997 kb on - strand, within MPMX19_06232at 421.997 kb on - strand, within MPMX19_06232at 421.997 kb on - strand, within MPMX19_06232at 421.997 kb on - strand, within MPMX19_06232at 421.997 kb on - strand, within MPMX19_06232at 421.997 kb on - strand, within MPMX19_06232at 421.997 kb on - strand, within MPMX19_06232at 421.997 kb on - strand, within MPMX19_06232at 422.068 kb on + strand, within MPMX19_06232at 422.068 kb on + strand, within MPMX19_06232at 422.068 kb on + strand, within MPMX19_06232at 422.068 kb on + strand, within MPMX19_06232at 422.068 kb on + strand, within MPMX19_06232at 422.068 kb on + strand, within MPMX19_06232at 422.069 kb on - strand, within MPMX19_06232at 422.069 kb on - strand, within MPMX19_06232at 422.069 kb on - strand, within MPMX19_06232at 422.069 kb on - strand, within MPMX19_06232at 422.069 kb on - strand, within MPMX19_06232at 422.069 kb on - strand, within MPMX19_06232at 422.069 kb on - strand, within MPMX19_06232at 422.069 kb on - strand, within MPMX19_06232at 422.069 kb on - strand, within MPMX19_06232at 422.069 kb on - strand, within MPMX19_06232at 422.069 kb on - strand, within MPMX19_06232at 422.149 kb on + strand, within MPMX19_06232at 422.149 kb on + strand, within MPMX19_06232at 422.150 kb on - strand, within MPMX19_06232at 422.150 kb on - strand, within MPMX19_06232at 422.438 kb on - strand, within MPMX19_06232at 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.536 kb on + strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.537 kb on - strandat 422.621 kb on - strandat 422.621 kb on - strandat 422.718 kb on + strandat 422.719 kb on - strandat 422.719 kb on - strandat 422.838 kb on + strandat 422.838 kb on + strandat 422.838 kb on + strandat 422.839 kb on - strandat 422.839 kb on - strandat 422.839 kb on - strandat 422.839 kb on - strandat 422.839 kb on - strandat 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.120 kb on + strand, within MPMX19_06233at 423.120 kb on + strand, within MPMX19_06233at 423.120 kb on + strand, within MPMX19_06233at 423.120 kb on + strand, within MPMX19_06233at 423.120 kb on + strand, within MPMX19_06233at 423.121 kb on - strand, within MPMX19_06233at 423.121 kb on - strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.130 kb on - strand, within MPMX19_06233at 423.130 kb on - strand, within MPMX19_06233at 423.130 kb on - strand, within MPMX19_06233at 423.130 kb on - strand, within MPMX19_06233at 423.130 kb on - strand, within MPMX19_06233at 423.130 kb on - strand, within MPMX19_06233at 423.510 kb on + strand, within MPMX19_06233at 423.510 kb on + strand, within MPMX19_06233at 423.510 kb on + strand, within MPMX19_06233at 423.510 kb on + strand, within MPMX19_06233at 423.510 kb on + strand, within MPMX19_06233at 423.511 kb on - strand, within MPMX19_06233at 423.511 kb on - strand, within MPMX19_06233at 423.620 kb on + strandat 423.620 kb on + strandat 423.621 kb on - strandat 423.793 kb on + strand, within MPMX19_06234at 423.794 kb on - strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.892 kb on + strand, within MPMX19_06234at 423.892 kb on + strand, within MPMX19_06234at 423.892 kb on + strand, within MPMX19_06234at 423.892 kb on + strand, within MPMX19_06234at 423.893 kb on - strand, within MPMX19_06234at 423.893 kb on - strand, within MPMX19_06234at 423.893 kb on - strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.412 kb on + strand, within MPMX19_06234at 424.412 kb on + strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.447 kb on + strand, within MPMX19_06234at 424.447 kb on + strand, within MPMX19_06234

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
421,942 + MPMX19_06232 0.59 -0.5
421,942 + MPMX19_06232 0.59 +0.4
421,942 + MPMX19_06232 0.59 +0.8
421,943 - MPMX19_06232 0.59 +0.3
421,996 + MPMX19_06232 0.62 +1.2
421,996 + MPMX19_06232 0.62 -0.4
421,996 + MPMX19_06232 0.62 -1.7
421,996 + MPMX19_06232 0.62 +0.2
421,996 + MPMX19_06232 0.62 -0.3
421,996 + MPMX19_06232 0.62 -0.8
421,996 + MPMX19_06232 0.62 -0.4
421,997 - MPMX19_06232 0.62 -0.0
421,997 - MPMX19_06232 0.62 +0.1
421,997 - MPMX19_06232 0.62 -0.8
421,997 - MPMX19_06232 0.62 +0.2
421,997 - MPMX19_06232 0.62 +0.5
421,997 - MPMX19_06232 0.62 -0.1
421,997 - MPMX19_06232 0.62 -1.6
421,997 - MPMX19_06232 0.62 -0.3
421,997 - MPMX19_06232 0.62 -0.9
421,997 - MPMX19_06232 0.62 +0.2
421,997 - MPMX19_06232 0.62 -0.7
421,997 - MPMX19_06232 0.62 -2.3
422,068 + MPMX19_06232 0.66 -1.4
422,068 + MPMX19_06232 0.66 -0.5
422,068 + MPMX19_06232 0.66 -1.2
422,068 + MPMX19_06232 0.66 -1.4
422,068 + MPMX19_06232 0.66 -0.7
422,068 + MPMX19_06232 0.66 -1.3
422,069 - MPMX19_06232 0.66 -0.3
422,069 - MPMX19_06232 0.66 +0.2
422,069 - MPMX19_06232 0.66 +0.4
422,069 - MPMX19_06232 0.66 -1.4
422,069 - MPMX19_06232 0.66 +1.1
422,069 - MPMX19_06232 0.66 +1.3
422,069 - MPMX19_06232 0.66 -1.4
422,069 - MPMX19_06232 0.66 -0.4
422,069 - MPMX19_06232 0.66 -2.0
422,069 - MPMX19_06232 0.66 +0.5
422,069 - MPMX19_06232 0.66 -0.4
422,149 + MPMX19_06232 0.70 +2.3
422,149 + MPMX19_06232 0.70 -0.8
422,150 - MPMX19_06232 0.70 +0.1
422,150 - MPMX19_06232 0.70 -0.5
422,438 - MPMX19_06232 0.86 -0.7
422,536 + -1.4
422,536 + -0.5
422,536 + -0.5
422,536 + -0.2
422,536 + +1.1
422,536 + -0.4
422,536 + -0.0
422,536 + -1.0
422,536 + +0.2
422,536 + +0.4
422,536 + -2.0
422,536 + -0.4
422,536 + +0.1
422,536 + -0.5
422,536 + -3.0
422,536 + -0.6
422,536 + -0.1
422,536 + -0.5
422,536 + -1.5
422,536 + -0.4
422,536 + -2.5
422,536 + -0.8
422,536 + -0.6
422,537 - -1.4
422,537 - +0.2
422,537 - -0.2
422,537 - +0.6
422,537 - +0.2
422,537 - -2.2
422,537 - -0.2
422,537 - -0.4
422,537 - -0.3
422,537 - +0.2
422,537 - -1.2
422,537 - -1.0
422,537 - +1.1
422,537 - -1.2
422,537 - -0.5
422,537 - +0.2
422,537 - -0.0
422,621 - -0.5
422,621 - +0.5
422,718 + +1.3
422,719 - -1.7
422,719 - -0.4
422,838 + -0.1
422,838 + -0.5
422,838 + -0.0
422,839 - -0.5
422,839 - -0.3
422,839 - -0.4
422,839 - -0.9
422,839 - -0.1
423,018 + MPMX19_06233 0.23 +1.2
423,018 + MPMX19_06233 0.23 -0.8
423,018 + MPMX19_06233 0.23 -2.0
423,018 + MPMX19_06233 0.23 -0.9
423,018 + MPMX19_06233 0.23 -0.4
423,018 + MPMX19_06233 0.23 +0.8
423,018 + MPMX19_06233 0.23 +0.3
423,018 + MPMX19_06233 0.23 -0.0
423,018 + MPMX19_06233 0.23 +0.8
423,019 - MPMX19_06233 0.23 -0.9
423,019 - MPMX19_06233 0.23 -2.2
423,019 - MPMX19_06233 0.23 -0.1
423,019 - MPMX19_06233 0.23 +2.5
423,019 - MPMX19_06233 0.23 -1.1
423,019 - MPMX19_06233 0.23 -0.1
423,019 - MPMX19_06233 0.23 +1.2
423,120 + MPMX19_06233 0.36 +0.4
423,120 + MPMX19_06233 0.36 -0.2
423,120 + MPMX19_06233 0.36 -0.5
423,120 + MPMX19_06233 0.36 -0.6
423,120 + MPMX19_06233 0.36 +0.0
423,121 - MPMX19_06233 0.36 -0.4
423,121 - MPMX19_06233 0.36 +0.3
423,129 + MPMX19_06233 0.38 -0.1
423,129 + MPMX19_06233 0.38 -0.9
423,129 + MPMX19_06233 0.38 -2.1
423,129 + MPMX19_06233 0.38 -2.5
423,129 + MPMX19_06233 0.38 -1.0
423,129 + MPMX19_06233 0.38 -0.2
423,129 + MPMX19_06233 0.38 +0.9
423,129 + MPMX19_06233 0.38 +0.8
423,129 + MPMX19_06233 0.38 -1.4
423,129 + MPMX19_06233 0.38 -0.9
423,129 + MPMX19_06233 0.38 -0.1
423,130 - MPMX19_06233 0.38 -1.0
423,130 - MPMX19_06233 0.38 -1.7
423,130 - MPMX19_06233 0.38 -0.8
423,130 - MPMX19_06233 0.38 +1.3
423,130 - MPMX19_06233 0.38 -0.4
423,130 - MPMX19_06233 0.38 -0.8
423,510 + MPMX19_06233 0.88 -0.3
423,510 + MPMX19_06233 0.88 -0.5
423,510 + MPMX19_06233 0.88 +0.6
423,510 + MPMX19_06233 0.88 -1.8
423,510 + MPMX19_06233 0.88 -0.4
423,511 - MPMX19_06233 0.88 -0.8
423,511 - MPMX19_06233 0.88 -0.9
423,620 + -0.4
423,620 + -0.6
423,621 - -1.0
423,793 + MPMX19_06234 0.13 +0.8
423,794 - MPMX19_06234 0.13 -2.5
423,835 + MPMX19_06234 0.17 -2.1
423,835 + MPMX19_06234 0.17 -0.1
423,835 + MPMX19_06234 0.17 -0.3
423,835 + MPMX19_06234 0.17 +0.9
423,835 + MPMX19_06234 0.17 +0.9
423,835 + MPMX19_06234 0.17 +0.2
423,835 + MPMX19_06234 0.17 -0.8
423,836 - MPMX19_06234 0.17 +0.2
423,836 - MPMX19_06234 0.17 -0.7
423,836 - MPMX19_06234 0.17 +0.2
423,836 - MPMX19_06234 0.17 -1.3
423,836 - MPMX19_06234 0.17 +0.7
423,836 - MPMX19_06234 0.17 +0.5
423,836 - MPMX19_06234 0.17 -1.1
423,892 + MPMX19_06234 0.21 +1.8
423,892 + MPMX19_06234 0.21 -0.4
423,892 + MPMX19_06234 0.21 -0.7
423,892 + MPMX19_06234 0.21 +1.5
423,893 - MPMX19_06234 0.21 -0.7
423,893 - MPMX19_06234 0.21 -0.5
423,893 - MPMX19_06234 0.21 +2.0
424,162 + MPMX19_06234 0.44 -1.3
424,162 + MPMX19_06234 0.44 -1.0
424,162 + MPMX19_06234 0.44 -0.8
424,162 + MPMX19_06234 0.44 -0.3
424,162 + MPMX19_06234 0.44 +0.6
424,162 + MPMX19_06234 0.44 -0.5
424,162 + MPMX19_06234 0.44 -0.6
424,162 + MPMX19_06234 0.44 +0.6
424,162 + MPMX19_06234 0.44 +0.5
424,162 + MPMX19_06234 0.44 -0.1
424,163 - MPMX19_06234 0.44 -0.2
424,163 - MPMX19_06234 0.44 +1.1
424,163 - MPMX19_06234 0.44 -0.7
424,163 - MPMX19_06234 0.44 +0.3
424,163 - MPMX19_06234 0.44 +0.8
424,163 - MPMX19_06234 0.44 +0.1
424,412 + MPMX19_06234 0.65 -0.4
424,412 + MPMX19_06234 0.65 -0.3
424,413 - MPMX19_06234 0.65 -0.9
424,413 - MPMX19_06234 0.65 -0.9
424,413 - MPMX19_06234 0.65 -0.5
424,413 - MPMX19_06234 0.65 +1.2
424,413 - MPMX19_06234 0.65 -1.4
424,413 - MPMX19_06234 0.65 -0.9
424,413 - MPMX19_06234 0.65 -1.8
424,413 - MPMX19_06234 0.65 -0.4
424,413 - MPMX19_06234 0.65 -0.2
424,413 - MPMX19_06234 0.65 -0.6
424,414 + MPMX19_06234 0.65 -0.2
424,414 + MPMX19_06234 0.65 -0.1
424,414 + MPMX19_06234 0.65 +0.9
424,414 + MPMX19_06234 0.65 -0.0
424,414 + MPMX19_06234 0.65 -1.5
424,414 + MPMX19_06234 0.65 -0.4
424,414 + MPMX19_06234 0.65 -1.9
424,414 + MPMX19_06234 0.65 -2.5
424,414 + MPMX19_06234 0.65 +0.4
424,414 + MPMX19_06234 0.65 -1.0
424,414 + MPMX19_06234 0.65 -0.0
424,414 + MPMX19_06234 0.65 -0.0
424,415 - MPMX19_06234 0.65 +0.2
424,415 - MPMX19_06234 0.65 -1.0
424,415 - MPMX19_06234 0.65 -0.4
424,415 - MPMX19_06234 0.65 +1.3
424,415 - MPMX19_06234 0.65 -1.3
424,415 - MPMX19_06234 0.65 +1.5
424,415 - MPMX19_06234 0.65 -0.2
424,415 - MPMX19_06234 0.65 -2.5
424,415 - MPMX19_06234 0.65 +1.3
424,415 - MPMX19_06234 0.65 +0.3
424,415 - MPMX19_06234 0.65 -0.8
424,415 - MPMX19_06234 0.65 -2.1
424,415 - MPMX19_06234 0.65 +0.9
424,415 - MPMX19_06234 0.65 +0.6
424,415 - MPMX19_06234 0.65 +0.8
424,415 - MPMX19_06234 0.65 -2.7
424,415 - MPMX19_06234 0.65 +0.3
424,415 - MPMX19_06234 0.65 -2.5
424,447 + MPMX19_06234 0.68 +1.9
424,447 + MPMX19_06234 0.68 -1.9

Or see this region's nucleotide sequence