Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06223

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06222 and MPMX19_06223 are separated by 213 nucleotidesMPMX19_06223 and MPMX19_06224 are separated by 165 nucleotides MPMX19_06222: MPMX19_06222 - 6-deoxy-6-sulfogluconolactonase, at 406,862 to 407,746 _06222 MPMX19_06223: MPMX19_06223 - HTH-type transcriptional regulator GbpR, at 407,960 to 408,952 _06223 MPMX19_06224: MPMX19_06224 - Multiple sugar-binding periplasmic protein SbpA, at 409,118 to 410,209 _06224 Position (kb) 407 408 409Strain fitness (log2 ratio) -2 -1 0 1 2at 407.189 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.221 kb on - strand, within MPMX19_06222at 407.221 kb on - strand, within MPMX19_06222at 407.221 kb on - strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.298 kb on + strand, within MPMX19_06222at 407.298 kb on + strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.343 kb on + strand, within MPMX19_06222at 407.343 kb on + strand, within MPMX19_06222at 407.343 kb on + strand, within MPMX19_06222at 407.344 kb on - strand, within MPMX19_06222at 407.344 kb on - strand, within MPMX19_06222at 407.651 kb on - strand, within MPMX19_06222at 407.661 kb on + strandat 407.661 kb on + strandat 407.661 kb on + strandat 407.662 kb on - strandat 407.662 kb on - strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.754 kb on - strandat 407.754 kb on - strandat 407.754 kb on - strandat 407.824 kb on - strandat 407.863 kb on - strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.874 kb on - strandat 407.874 kb on - strandat 407.906 kb on + strandat 407.906 kb on + strandat 407.907 kb on - strandat 408.182 kb on + strand, within MPMX19_06223at 408.458 kb on + strand, within MPMX19_06223at 408.458 kb on + strand, within MPMX19_06223at 408.458 kb on + strand, within MPMX19_06223at 408.458 kb on + strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.480 kb on - strand, within MPMX19_06223at 408.480 kb on - strand, within MPMX19_06223at 408.818 kb on + strand, within MPMX19_06223at 408.819 kb on - strand, within MPMX19_06223at 409.094 kb on + strandat 409.094 kb on + strandat 409.098 kb on - strandat 409.098 kb on - strandat 409.098 kb on - strandat 409.098 kb on - strandat 409.298 kb on + strand, within MPMX19_06224at 409.298 kb on + strand, within MPMX19_06224at 409.299 kb on - strand, within MPMX19_06224at 409.316 kb on + strand, within MPMX19_06224at 409.317 kb on - strand, within MPMX19_06224at 409.334 kb on + strand, within MPMX19_06224at 409.334 kb on + strand, within MPMX19_06224at 409.335 kb on - strand, within MPMX19_06224at 409.335 kb on - strand, within MPMX19_06224at 409.335 kb on - strand, within MPMX19_06224at 409.335 kb on - strand, within MPMX19_06224at 409.335 kb on - strand, within MPMX19_06224at 409.484 kb on + strand, within MPMX19_06224at 409.484 kb on + strand, within MPMX19_06224at 409.484 kb on + strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.520 kb on + strand, within MPMX19_06224at 409.520 kb on + strand, within MPMX19_06224at 409.520 kb on + strand, within MPMX19_06224at 409.520 kb on + strand, within MPMX19_06224at 409.521 kb on - strand, within MPMX19_06224at 409.521 kb on - strand, within MPMX19_06224at 409.521 kb on - strand, within MPMX19_06224at 409.521 kb on - strand, within MPMX19_06224at 409.523 kb on + strand, within MPMX19_06224at 409.523 kb on + strand, within MPMX19_06224at 409.524 kb on - strand, within MPMX19_06224at 409.524 kb on - strand, within MPMX19_06224at 409.524 kb on - strand, within MPMX19_06224at 409.524 kb on - strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.655 kb on + strand, within MPMX19_06224at 409.655 kb on + strand, within MPMX19_06224at 409.655 kb on + strand, within MPMX19_06224at 409.655 kb on + strand, within MPMX19_06224at 409.655 kb on + strand, within MPMX19_06224at 409.655 kb on + strand, within MPMX19_06224at 409.656 kb on - strand, within MPMX19_06224at 409.656 kb on - strand, within MPMX19_06224at 409.656 kb on - strand, within MPMX19_06224at 409.656 kb on - strand, within MPMX19_06224at 409.656 kb on - strand, within MPMX19_06224at 409.656 kb on - strand, within MPMX19_06224at 409.664 kb on + strand, within MPMX19_06224at 409.664 kb on + strand, within MPMX19_06224at 409.664 kb on + strand, within MPMX19_06224at 409.664 kb on + strand, within MPMX19_06224at 409.664 kb on + strand, within MPMX19_06224at 409.665 kb on - strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.811 kb on + strand, within MPMX19_06224at 409.811 kb on + strand, within MPMX19_06224at 409.811 kb on + strand, within MPMX19_06224at 409.811 kb on + strand, within MPMX19_06224at 409.811 kb on + strand, within MPMX19_06224at 409.812 kb on - strand, within MPMX19_06224at 409.812 kb on - strand, within MPMX19_06224at 409.812 kb on - strand, within MPMX19_06224at 409.814 kb on + strand, within MPMX19_06224at 409.814 kb on + strand, within MPMX19_06224at 409.814 kb on + strand, within MPMX19_06224at 409.814 kb on + strand, within MPMX19_06224at 409.815 kb on - strand, within MPMX19_06224at 409.815 kb on - strand, within MPMX19_06224at 409.815 kb on - strand, within MPMX19_06224at 409.850 kb on + strand, within MPMX19_06224at 409.850 kb on + strand, within MPMX19_06224at 409.851 kb on - strand, within MPMX19_06224at 409.898 kb on + strand, within MPMX19_06224

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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407,189 + MPMX19_06222 0.37 +0.2
407,220 + MPMX19_06222 0.40 +0.5
407,220 + MPMX19_06222 0.40 -1.0
407,220 + MPMX19_06222 0.40 +0.6
407,220 + MPMX19_06222 0.40 -0.9
407,220 + MPMX19_06222 0.40 -0.0
407,220 + MPMX19_06222 0.40 -0.9
407,220 + MPMX19_06222 0.40 -0.0
407,220 + MPMX19_06222 0.40 -0.1
407,220 + MPMX19_06222 0.40 -0.2
407,221 - MPMX19_06222 0.41 +0.4
407,221 - MPMX19_06222 0.41 +0.2
407,221 - MPMX19_06222 0.41 +0.5
407,250 + MPMX19_06222 0.44 +0.3
407,250 + MPMX19_06222 0.44 +1.5
407,250 + MPMX19_06222 0.44 -0.6
407,250 + MPMX19_06222 0.44 +0.1
407,250 + MPMX19_06222 0.44 -1.5
407,250 + MPMX19_06222 0.44 +0.6
407,251 - MPMX19_06222 0.44 +0.3
407,251 - MPMX19_06222 0.44 -0.5
407,251 - MPMX19_06222 0.44 -0.0
407,251 - MPMX19_06222 0.44 +0.4
407,251 - MPMX19_06222 0.44 -0.0
407,251 - MPMX19_06222 0.44 -0.8
407,251 - MPMX19_06222 0.44 +0.1
407,251 - MPMX19_06222 0.44 +0.4
407,251 - MPMX19_06222 0.44 +0.4
407,251 - MPMX19_06222 0.44 -1.4
407,298 + MPMX19_06222 0.49 -0.7
407,298 + MPMX19_06222 0.49 +0.6
407,299 - MPMX19_06222 0.49 -0.2
407,299 - MPMX19_06222 0.49 -1.3
407,299 - MPMX19_06222 0.49 -0.8
407,299 - MPMX19_06222 0.49 -1.9
407,299 - MPMX19_06222 0.49 +0.0
407,299 - MPMX19_06222 0.49 -1.9
407,299 - MPMX19_06222 0.49 -0.2
407,299 - MPMX19_06222 0.49 -0.5
407,299 - MPMX19_06222 0.49 -0.7
407,299 - MPMX19_06222 0.49 +0.1
407,299 - MPMX19_06222 0.49 -0.4
407,299 - MPMX19_06222 0.49 -1.7
407,343 + MPMX19_06222 0.54 +0.5
407,343 + MPMX19_06222 0.54 +0.9
407,343 + MPMX19_06222 0.54 -0.5
407,344 - MPMX19_06222 0.54 -1.4
407,344 - MPMX19_06222 0.54 -1.2
407,651 - MPMX19_06222 0.89 +0.4
407,661 + +0.3
407,661 + -1.0
407,661 + +0.8
407,662 - +0.5
407,662 - -0.1
407,753 + +0.2
407,753 + -0.9
407,753 + +0.3
407,753 + +0.4
407,753 + -0.8
407,753 + -0.2
407,754 - +0.8
407,754 - -0.4
407,754 - -0.2
407,824 - +0.8
407,863 - -0.5
407,873 + +1.4
407,873 + -0.4
407,874 - +0.8
407,874 - +1.2
407,906 + -1.0
407,906 + -0.8
407,907 - +0.6
408,182 + MPMX19_06223 0.22 -0.2
408,458 + MPMX19_06223 0.50 -1.1
408,458 + MPMX19_06223 0.50 -0.0
408,458 + MPMX19_06223 0.50 +0.9
408,458 + MPMX19_06223 0.50 +0.2
408,459 - MPMX19_06223 0.50 -0.4
408,459 - MPMX19_06223 0.50 -0.2
408,459 - MPMX19_06223 0.50 +1.5
408,459 - MPMX19_06223 0.50 -0.2
408,459 - MPMX19_06223 0.50 -0.4
408,480 - MPMX19_06223 0.52 +0.5
408,480 - MPMX19_06223 0.52 +0.4
408,818 + MPMX19_06223 0.86 +0.5
408,819 - MPMX19_06223 0.87 -0.2
409,094 + -0.7
409,094 + -0.2
409,098 - -0.5
409,098 - +0.8
409,098 - -0.4
409,098 - +0.8
409,298 + MPMX19_06224 0.16 -1.4
409,298 + MPMX19_06224 0.16 +0.4
409,299 - MPMX19_06224 0.17 +1.1
409,316 + MPMX19_06224 0.18 +1.4
409,317 - MPMX19_06224 0.18 -0.2
409,334 + MPMX19_06224 0.20 +0.6
409,334 + MPMX19_06224 0.20 -0.8
409,335 - MPMX19_06224 0.20 +1.6
409,335 - MPMX19_06224 0.20 -0.2
409,335 - MPMX19_06224 0.20 -0.2
409,335 - MPMX19_06224 0.20 +0.3
409,335 - MPMX19_06224 0.20 -1.0
409,484 + MPMX19_06224 0.34 +1.8
409,484 + MPMX19_06224 0.34 +0.4
409,484 + MPMX19_06224 0.34 +0.6
409,485 - MPMX19_06224 0.34 +0.8
409,485 - MPMX19_06224 0.34 -1.0
409,485 - MPMX19_06224 0.34 -0.2
409,485 - MPMX19_06224 0.34 -0.5
409,485 - MPMX19_06224 0.34 -0.5
409,485 - MPMX19_06224 0.34 -0.4
409,485 - MPMX19_06224 0.34 -1.0
409,520 + MPMX19_06224 0.37 +1.8
409,520 + MPMX19_06224 0.37 -1.5
409,520 + MPMX19_06224 0.37 -0.2
409,520 + MPMX19_06224 0.37 -1.4
409,521 - MPMX19_06224 0.37 -1.4
409,521 - MPMX19_06224 0.37 -0.8
409,521 - MPMX19_06224 0.37 -2.6
409,521 - MPMX19_06224 0.37 -0.6
409,523 + MPMX19_06224 0.37 -1.4
409,523 + MPMX19_06224 0.37 -0.4
409,524 - MPMX19_06224 0.37 +0.1
409,524 - MPMX19_06224 0.37 +1.1
409,524 - MPMX19_06224 0.37 +1.2
409,524 - MPMX19_06224 0.37 -0.2
409,568 + MPMX19_06224 0.41 +0.0
409,568 + MPMX19_06224 0.41 -0.4
409,568 + MPMX19_06224 0.41 -1.0
409,568 + MPMX19_06224 0.41 -0.5
409,568 + MPMX19_06224 0.41 +0.9
409,568 + MPMX19_06224 0.41 -1.7
409,568 + MPMX19_06224 0.41 -0.9
409,568 + MPMX19_06224 0.41 -1.3
409,568 + MPMX19_06224 0.41 +0.2
409,569 - MPMX19_06224 0.41 -1.1
409,569 - MPMX19_06224 0.41 -0.2
409,569 - MPMX19_06224 0.41 +0.2
409,569 - MPMX19_06224 0.41 +2.4
409,569 - MPMX19_06224 0.41 -0.2
409,569 - MPMX19_06224 0.41 -1.7
409,569 - MPMX19_06224 0.41 -0.1
409,569 - MPMX19_06224 0.41 -2.5
409,655 + MPMX19_06224 0.49 -0.9
409,655 + MPMX19_06224 0.49 -1.1
409,655 + MPMX19_06224 0.49 -2.0
409,655 + MPMX19_06224 0.49 -0.5
409,655 + MPMX19_06224 0.49 -1.4
409,655 + MPMX19_06224 0.49 -0.4
409,656 - MPMX19_06224 0.49 +0.9
409,656 - MPMX19_06224 0.49 -1.1
409,656 - MPMX19_06224 0.49 -0.5
409,656 - MPMX19_06224 0.49 -0.0
409,656 - MPMX19_06224 0.49 -1.5
409,656 - MPMX19_06224 0.49 -0.7
409,664 + MPMX19_06224 0.50 -0.4
409,664 + MPMX19_06224 0.50 -1.1
409,664 + MPMX19_06224 0.50 -1.1
409,664 + MPMX19_06224 0.50 -0.9
409,664 + MPMX19_06224 0.50 +0.8
409,665 - MPMX19_06224 0.50 +1.3
409,694 + MPMX19_06224 0.53 -0.7
409,694 + MPMX19_06224 0.53 -1.1
409,694 + MPMX19_06224 0.53 -1.6
409,694 + MPMX19_06224 0.53 -0.7
409,694 + MPMX19_06224 0.53 -0.4
409,694 + MPMX19_06224 0.53 -0.2
409,694 + MPMX19_06224 0.53 -0.7
409,694 + MPMX19_06224 0.53 -0.6
409,694 + MPMX19_06224 0.53 +1.1
409,694 + MPMX19_06224 0.53 -0.1
409,695 - MPMX19_06224 0.53 +0.3
409,695 - MPMX19_06224 0.53 -0.2
409,695 - MPMX19_06224 0.53 -0.9
409,695 - MPMX19_06224 0.53 -1.9
409,695 - MPMX19_06224 0.53 -0.5
409,695 - MPMX19_06224 0.53 -0.3
409,695 - MPMX19_06224 0.53 -0.3
409,811 + MPMX19_06224 0.63 -1.0
409,811 + MPMX19_06224 0.63 -0.1
409,811 + MPMX19_06224 0.63 -1.1
409,811 + MPMX19_06224 0.63 -0.7
409,811 + MPMX19_06224 0.63 +1.7
409,812 - MPMX19_06224 0.64 -0.8
409,812 - MPMX19_06224 0.64 +0.7
409,812 - MPMX19_06224 0.64 -0.5
409,814 + MPMX19_06224 0.64 -0.0
409,814 + MPMX19_06224 0.64 -0.1
409,814 + MPMX19_06224 0.64 -0.7
409,814 + MPMX19_06224 0.64 -1.4
409,815 - MPMX19_06224 0.64 +0.1
409,815 - MPMX19_06224 0.64 +1.2
409,815 - MPMX19_06224 0.64 +1.1
409,850 + MPMX19_06224 0.67 +0.1
409,850 + MPMX19_06224 0.67 -0.2
409,851 - MPMX19_06224 0.67 -0.4
409,898 + MPMX19_06224 0.71 +0.3

Or see this region's nucleotide sequence