Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06121

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06120 and MPMX19_06121 are separated by 144 nucleotidesMPMX19_06121 and MPMX19_06122 are separated by 159 nucleotides MPMX19_06120: MPMX19_06120 - hypothetical protein, at 305,286 to 306,242 _06120 MPMX19_06121: MPMX19_06121 - hypothetical protein, at 306,387 to 307,229 _06121 MPMX19_06122: MPMX19_06122 - Acetylornithine deacetylase, at 307,389 to 308,717 _06122 Position (kb) 306 307 308Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 305.521 kb on + strand, within MPMX19_06120at 305.521 kb on + strand, within MPMX19_06120at 305.521 kb on + strand, within MPMX19_06120at 305.522 kb on - strand, within MPMX19_06120at 305.522 kb on - strand, within MPMX19_06120at 305.608 kb on + strand, within MPMX19_06120at 305.608 kb on + strand, within MPMX19_06120at 305.609 kb on - strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.666 kb on - strand, within MPMX19_06120at 305.666 kb on - strand, within MPMX19_06120at 305.666 kb on - strand, within MPMX19_06120at 305.666 kb on - strand, within MPMX19_06120at 305.674 kb on + strand, within MPMX19_06120at 305.674 kb on + strand, within MPMX19_06120at 305.674 kb on + strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.770 kb on + strand, within MPMX19_06120at 305.770 kb on + strand, within MPMX19_06120at 305.770 kb on + strand, within MPMX19_06120at 305.771 kb on - strand, within MPMX19_06120at 305.771 kb on - strand, within MPMX19_06120at 305.771 kb on - strand, within MPMX19_06120at 305.771 kb on - strand, within MPMX19_06120at 305.854 kb on + strand, within MPMX19_06120at 305.855 kb on - strand, within MPMX19_06120at 305.893 kb on + strand, within MPMX19_06120at 305.893 kb on + strand, within MPMX19_06120at 305.893 kb on + strand, within MPMX19_06120at 305.894 kb on - strand, within MPMX19_06120at 305.894 kb on - strand, within MPMX19_06120at 305.894 kb on - strand, within MPMX19_06120at 305.894 kb on - strand, within MPMX19_06120at 305.894 kb on - strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.932 kb on + strand, within MPMX19_06120at 305.932 kb on + strand, within MPMX19_06120at 305.933 kb on - strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.089 kb on - strand, within MPMX19_06120at 306.089 kb on - strand, within MPMX19_06120at 306.089 kb on - strand, within MPMX19_06120at 306.089 kb on - strand, within MPMX19_06120at 306.089 kb on - strand, within MPMX19_06120at 306.095 kb on - strand, within MPMX19_06120at 306.339 kb on - strandat 306.829 kb on + strand, within MPMX19_06121at 306.829 kb on + strand, within MPMX19_06121at 306.829 kb on + strand, within MPMX19_06121at 306.830 kb on - strand, within MPMX19_06121at 306.830 kb on - strand, within MPMX19_06121at 306.830 kb on - strand, within MPMX19_06121at 306.830 kb on - strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 307.078 kb on + strand, within MPMX19_06121at 307.079 kb on - strand, within MPMX19_06121at 307.079 kb on - strand, within MPMX19_06121at 307.079 kb on - strand, within MPMX19_06121at 307.079 kb on - strand, within MPMX19_06121at 307.229 kb on + strandat 307.229 kb on + strandat 307.229 kb on + strandat 307.229 kb on + strandat 307.229 kb on + strandat 307.230 kb on - strandat 307.230 kb on - strandat 307.230 kb on - strandat 307.230 kb on - strandat 307.261 kb on + strandat 307.262 kb on - strandat 307.262 kb on - strandat 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.770 kb on + strand, within MPMX19_06122at 307.770 kb on + strand, within MPMX19_06122at 307.771 kb on - strand, within MPMX19_06122at 307.771 kb on - strand, within MPMX19_06122at 307.771 kb on - strand, within MPMX19_06122at 307.771 kb on - strand, within MPMX19_06122at 307.771 kb on - strand, within MPMX19_06122at 307.771 kb on - strand, within MPMX19_06122at 307.938 kb on + strand, within MPMX19_06122at 307.938 kb on + strand, within MPMX19_06122

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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305,521 + MPMX19_06120 0.25 +0.1
305,521 + MPMX19_06120 0.25 -0.4
305,521 + MPMX19_06120 0.25 -0.4
305,522 - MPMX19_06120 0.25 -0.3
305,522 - MPMX19_06120 0.25 -0.5
305,608 + MPMX19_06120 0.34 -0.3
305,608 + MPMX19_06120 0.34 +0.2
305,609 - MPMX19_06120 0.34 +0.2
305,665 + MPMX19_06120 0.40 +0.4
305,665 + MPMX19_06120 0.40 -1.5
305,665 + MPMX19_06120 0.40 +1.2
305,665 + MPMX19_06120 0.40 -0.4
305,665 + MPMX19_06120 0.40 +0.1
305,665 + MPMX19_06120 0.40 -1.0
305,666 - MPMX19_06120 0.40 -1.2
305,666 - MPMX19_06120 0.40 +0.6
305,666 - MPMX19_06120 0.40 +0.8
305,666 - MPMX19_06120 0.40 -1.2
305,674 + MPMX19_06120 0.41 -1.2
305,674 + MPMX19_06120 0.41 -1.8
305,674 + MPMX19_06120 0.41 -1.3
305,675 - MPMX19_06120 0.41 -0.3
305,675 - MPMX19_06120 0.41 -0.5
305,675 - MPMX19_06120 0.41 +1.8
305,675 - MPMX19_06120 0.41 +0.8
305,675 - MPMX19_06120 0.41 +0.1
305,675 - MPMX19_06120 0.41 +0.0
305,770 + MPMX19_06120 0.51 -0.8
305,770 + MPMX19_06120 0.51 -0.8
305,770 + MPMX19_06120 0.51 +1.4
305,771 - MPMX19_06120 0.51 -0.2
305,771 - MPMX19_06120 0.51 +0.1
305,771 - MPMX19_06120 0.51 +2.5
305,771 - MPMX19_06120 0.51 +0.2
305,854 + MPMX19_06120 0.59 -0.9
305,855 - MPMX19_06120 0.59 -0.0
305,893 + MPMX19_06120 0.63 +0.4
305,893 + MPMX19_06120 0.63 -0.4
305,893 + MPMX19_06120 0.63 -0.9
305,894 - MPMX19_06120 0.64 -0.7
305,894 - MPMX19_06120 0.64 +0.8
305,894 - MPMX19_06120 0.64 -1.5
305,894 - MPMX19_06120 0.64 +1.8
305,894 - MPMX19_06120 0.64 +0.2
305,929 + MPMX19_06120 0.67 +0.1
305,929 + MPMX19_06120 0.67 +0.9
305,929 + MPMX19_06120 0.67 +0.5
305,929 + MPMX19_06120 0.67 -1.2
305,929 + MPMX19_06120 0.67 -0.8
305,929 + MPMX19_06120 0.67 +0.8
305,929 + MPMX19_06120 0.67 -1.1
305,929 + MPMX19_06120 0.67 +0.5
305,929 + MPMX19_06120 0.67 -1.7
305,929 + MPMX19_06120 0.67 -0.8
305,929 + MPMX19_06120 0.67 -0.3
305,929 + MPMX19_06120 0.67 -0.2
305,929 + MPMX19_06120 0.67 +1.2
305,929 + MPMX19_06120 0.67 -0.1
305,929 + MPMX19_06120 0.67 -0.8
305,930 - MPMX19_06120 0.67 +1.1
305,930 - MPMX19_06120 0.67 -0.1
305,930 - MPMX19_06120 0.67 -0.1
305,930 - MPMX19_06120 0.67 -0.3
305,930 - MPMX19_06120 0.67 +0.3
305,930 - MPMX19_06120 0.67 -0.1
305,930 - MPMX19_06120 0.67 +0.1
305,930 - MPMX19_06120 0.67 +0.3
305,930 - MPMX19_06120 0.67 -0.5
305,930 - MPMX19_06120 0.67 -0.3
305,930 - MPMX19_06120 0.67 +0.4
305,932 + MPMX19_06120 0.68 -0.8
305,932 + MPMX19_06120 0.68 -0.4
305,933 - MPMX19_06120 0.68 +0.3
306,088 + MPMX19_06120 0.84 -0.2
306,088 + MPMX19_06120 0.84 +1.3
306,088 + MPMX19_06120 0.84 -1.4
306,088 + MPMX19_06120 0.84 +0.4
306,088 + MPMX19_06120 0.84 -0.7
306,088 + MPMX19_06120 0.84 +1.0
306,088 + MPMX19_06120 0.84 -0.6
306,088 + MPMX19_06120 0.84 -0.3
306,088 + MPMX19_06120 0.84 -1.2
306,089 - MPMX19_06120 0.84 +0.8
306,089 - MPMX19_06120 0.84 -3.0
306,089 - MPMX19_06120 0.84 -0.4
306,089 - MPMX19_06120 0.84 -2.3
306,089 - MPMX19_06120 0.84 -1.1
306,095 - MPMX19_06120 0.85 -0.8
306,339 - +0.0
306,829 + MPMX19_06121 0.52 -0.3
306,829 + MPMX19_06121 0.52 +0.1
306,829 + MPMX19_06121 0.52 +0.8
306,830 - MPMX19_06121 0.53 -0.2
306,830 - MPMX19_06121 0.53 -1.4
306,830 - MPMX19_06121 0.53 -0.2
306,830 - MPMX19_06121 0.53 +0.9
306,973 + MPMX19_06121 0.70 -0.9
306,973 + MPMX19_06121 0.70 +1.1
306,973 + MPMX19_06121 0.70 +0.8
306,973 + MPMX19_06121 0.70 +0.1
306,973 + MPMX19_06121 0.70 -0.1
306,973 + MPMX19_06121 0.70 -1.5
306,973 + MPMX19_06121 0.70 +1.0
306,974 - MPMX19_06121 0.70 -1.8
306,974 - MPMX19_06121 0.70 -2.0
306,974 - MPMX19_06121 0.70 +0.2
306,974 - MPMX19_06121 0.70 +0.3
306,974 - MPMX19_06121 0.70 -0.4
306,974 - MPMX19_06121 0.70 -0.5
306,974 - MPMX19_06121 0.70 -1.2
307,078 + MPMX19_06121 0.82 +0.3
307,079 - MPMX19_06121 0.82 -0.5
307,079 - MPMX19_06121 0.82 -0.4
307,079 - MPMX19_06121 0.82 +1.0
307,079 - MPMX19_06121 0.82 +0.6
307,229 + +0.5
307,229 + +0.6
307,229 + +0.6
307,229 + -1.0
307,229 + -2.6
307,230 - -0.7
307,230 - -0.7
307,230 - -0.4
307,230 - -2.7
307,261 + -1.1
307,262 - -0.5
307,262 - -0.1
307,527 + MPMX19_06122 0.10 +0.6
307,527 + MPMX19_06122 0.10 -2.1
307,527 + MPMX19_06122 0.10 -0.1
307,527 + MPMX19_06122 0.10 -0.0
307,527 + MPMX19_06122 0.10 -2.7
307,527 + MPMX19_06122 0.10 -0.8
307,527 + MPMX19_06122 0.10 +0.2
307,527 + MPMX19_06122 0.10 +1.4
307,527 + MPMX19_06122 0.10 -0.7
307,528 - MPMX19_06122 0.10 +1.5
307,528 - MPMX19_06122 0.10 +0.2
307,528 - MPMX19_06122 0.10 -1.9
307,528 - MPMX19_06122 0.10 -1.1
307,528 - MPMX19_06122 0.10 -1.1
307,528 - MPMX19_06122 0.10 -1.7
307,528 - MPMX19_06122 0.10 -0.0
307,528 - MPMX19_06122 0.10 -0.8
307,528 - MPMX19_06122 0.10 -1.2
307,528 - MPMX19_06122 0.10 +0.9
307,587 + MPMX19_06122 0.15 +0.8
307,587 + MPMX19_06122 0.15 +0.2
307,587 + MPMX19_06122 0.15 +0.2
307,587 + MPMX19_06122 0.15 -0.8
307,587 + MPMX19_06122 0.15 +0.5
307,587 + MPMX19_06122 0.15 -1.4
307,587 + MPMX19_06122 0.15 +1.8
307,587 + MPMX19_06122 0.15 +0.0
307,587 + MPMX19_06122 0.15 -0.1
307,587 + MPMX19_06122 0.15 -1.5
307,587 + MPMX19_06122 0.15 -0.5
307,587 + MPMX19_06122 0.15 +0.8
307,587 + MPMX19_06122 0.15 +0.1
307,587 + MPMX19_06122 0.15 -0.0
307,587 + MPMX19_06122 0.15 -0.9
307,587 + MPMX19_06122 0.15 +0.2
307,587 + MPMX19_06122 0.15 -0.3
307,588 - MPMX19_06122 0.15 -0.3
307,588 - MPMX19_06122 0.15 -0.3
307,588 - MPMX19_06122 0.15 +0.5
307,588 - MPMX19_06122 0.15 -0.2
307,588 - MPMX19_06122 0.15 +0.8
307,588 - MPMX19_06122 0.15 -0.2
307,588 - MPMX19_06122 0.15 -1.1
307,588 - MPMX19_06122 0.15 -1.0
307,588 - MPMX19_06122 0.15 +1.8
307,588 - MPMX19_06122 0.15 +0.5
307,588 - MPMX19_06122 0.15 -1.8
307,588 - MPMX19_06122 0.15 +0.4
307,588 - MPMX19_06122 0.15 -1.7
307,588 - MPMX19_06122 0.15 -2.2
307,588 - MPMX19_06122 0.15 +0.1
307,770 + MPMX19_06122 0.29 -1.4
307,770 + MPMX19_06122 0.29 -2.0
307,771 - MPMX19_06122 0.29 -1.8
307,771 - MPMX19_06122 0.29 +0.5
307,771 - MPMX19_06122 0.29 +0.4
307,771 - MPMX19_06122 0.29 -0.2
307,771 - MPMX19_06122 0.29 -0.2
307,771 - MPMX19_06122 0.29 -0.7
307,938 + MPMX19_06122 0.41 -1.9
307,938 + MPMX19_06122 0.41 +0.6

Or see this region's nucleotide sequence