Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06089 and MPMX19_06090 are separated by 174 nucleotides MPMX19_06090 and MPMX19_06091 are separated by 478 nucleotides
MPMX19_06089: MPMX19_06089 - Regulatory protein LuxO, at 267,211 to 268,653
_06089
MPMX19_06090: MPMX19_06090 - Pyruvate dehydrogenase complex repressor, at 268,828 to 269,598
_06090
MPMX19_06091: MPMX19_06091 - Glycolate permease GlcA, at 270,077 to 271,753
_06091
Position (kb)
268
269
270 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 268.163 kb on + strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.164 kb on - strand, within MPMX19_06089 at 268.232 kb on + strand, within MPMX19_06089 at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.590 kb on + strand at 268.591 kb on - strand at 268.591 kb on - strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.727 kb on - strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 269.060 kb on + strand, within MPMX19_06090 at 269.135 kb on + strand, within MPMX19_06090 at 269.287 kb on + strand, within MPMX19_06090 at 269.287 kb on + strand, within MPMX19_06090 at 269.310 kb on - strand, within MPMX19_06090 at 269.310 kb on - strand, within MPMX19_06090 at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.854 kb on + strand at 269.854 kb on + strand at 269.855 kb on - strand at 269.855 kb on - strand at 269.855 kb on - strand at 269.900 kb on + strand at 269.900 kb on + strand at 269.900 kb on + strand at 269.900 kb on + strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 270.095 kb on + strand at 270.095 kb on + strand at 270.096 kb on - strand at 270.181 kb on + strand at 270.181 kb on + strand at 270.181 kb on + strand at 270.181 kb on + strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.296 kb on + strand, within MPMX19_06091 at 270.296 kb on + strand, within MPMX19_06091 at 270.296 kb on + strand, within MPMX19_06091 at 270.296 kb on + strand, within MPMX19_06091 at 270.297 kb on - strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.345 kb on - strand, within MPMX19_06091 at 270.345 kb on - strand, within MPMX19_06091
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 268,163 + MPMX19_06089 0.66 -0.7 268,163 + MPMX19_06089 0.66 +0.4 268,163 + MPMX19_06089 0.66 -1.5 268,163 + MPMX19_06089 0.66 -0.0 268,164 - MPMX19_06089 0.66 +0.4 268,232 + MPMX19_06089 0.71 -0.0 268,568 + -1.9 268,568 + -1.2 268,568 + -0.1 268,568 + -0.4 268,568 + -0.4 268,568 + -0.5 268,568 + -0.7 268,568 + -1.0 268,568 + -1.0 268,569 - +0.1 268,569 - -1.8 268,569 - +0.4 268,569 - -0.3 268,569 - -0.4 268,569 - +0.2 268,569 - -0.8 268,569 - +0.2 268,569 - +0.2 268,569 - -1.7 268,590 + -0.8 268,591 - +0.2 268,591 - +1.1 268,726 + -0.8 268,726 + +1.8 268,726 + +0.4 268,726 + +0.0 268,726 + +0.6 268,726 + +0.2 268,726 + -1.1 268,727 - +1.4 268,772 + -0.3 268,772 + +0.0 268,772 + +0.5 268,772 + +2.4 268,772 + -0.1 268,772 + -1.7 268,772 + -1.1 268,772 + +1.1 268,772 + -0.7 268,772 + +0.1 268,772 + -1.0 268,772 + -0.8 268,772 + +0.4 268,772 + +0.9 268,772 + -0.4 268,772 + -0.9 268,772 + +0.6 268,772 + -0.1 268,772 + +0.3 268,773 - -1.7 268,773 - -0.4 268,773 - -1.4 268,773 - +0.8 268,773 - -0.1 268,773 - -0.0 268,773 - +0.4 268,773 - +0.4 268,773 - +0.7 268,773 - +0.4 268,773 - +0.1 268,773 - +0.8 268,773 - -0.0 268,773 - +1.2 268,773 - +0.8 268,775 + -0.4 268,775 + -0.0 268,775 + -1.0 268,775 + -1.2 268,775 + -2.3 268,775 + +0.1 268,775 + -0.1 268,775 + -0.6 268,775 + -0.6 268,775 + -0.5 268,775 + +0.4 268,775 + +1.1 268,775 + -0.2 268,775 + -0.8 268,775 + +0.2 268,776 - -0.2 268,776 - -2.2 268,776 - -2.2 268,776 - -0.0 268,776 - -0.1 268,776 - +0.1 268,776 - -0.4 268,776 - +0.4 268,776 - -0.4 268,776 - -0.1 268,776 - +0.5 268,776 - -0.6 268,776 - -0.8 268,776 - -0.4 268,776 - -0.1 268,776 - -0.7 268,776 - -0.4 268,776 - -0.8 269,060 + MPMX19_06090 0.30 +0.3 269,135 + MPMX19_06090 0.40 -1.2 269,287 + MPMX19_06090 0.60 -0.1 269,287 + MPMX19_06090 0.60 -1.7 269,310 - MPMX19_06090 0.63 -1.5 269,310 - MPMX19_06090 0.63 -2.1 269,642 - +0.4 269,642 - -1.8 269,642 - +1.8 269,642 - +0.5 269,642 - -2.6 269,642 - -0.9 269,854 + +0.9 269,854 + +0.9 269,855 - +0.2 269,855 - -0.7 269,855 - +0.1 269,900 + +0.5 269,900 + -0.7 269,900 + -0.7 269,900 + -0.3 269,901 - -0.5 269,901 - -0.9 269,901 - -0.5 269,901 - -1.1 269,901 - -0.3 269,901 - +0.2 269,901 - -1.0 270,095 + -1.5 270,095 + -1.4 270,096 - -1.3 270,181 + -0.3 270,181 + +0.4 270,181 + -1.2 270,181 + +0.1 270,182 - -1.2 270,182 - -1.5 270,182 - -0.9 270,182 - +0.7 270,182 - +0.3 270,182 - -1.8 270,182 - -1.7 270,182 - -1.0 270,182 - -0.0 270,182 - -0.1 270,296 + MPMX19_06091 0.13 -0.3 270,296 + MPMX19_06091 0.13 -0.3 270,296 + MPMX19_06091 0.13 -0.1 270,296 + MPMX19_06091 0.13 -0.3 270,297 - MPMX19_06091 0.13 +0.6 270,344 + MPMX19_06091 0.16 -0.8 270,344 + MPMX19_06091 0.16 +1.4 270,344 + MPMX19_06091 0.16 -1.8 270,344 + MPMX19_06091 0.16 -0.8 270,344 + MPMX19_06091 0.16 -0.5 270,345 - MPMX19_06091 0.16 -0.3 270,345 - MPMX19_06091 0.16 +0.5
Or see this region's nucleotide sequence