Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06025 and MPMX19_06026 are separated by 74 nucleotides MPMX19_06026 and MPMX19_06027 are separated by 168 nucleotides MPMX19_06027 and MPMX19_06028 overlap by 16 nucleotides MPMX19_06028 and MPMX19_06029 are separated by 54 nucleotides
MPMX19_06025: MPMX19_06025 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 177,852 to 178,892
_06025
MPMX19_06026: MPMX19_06026 - hypothetical protein, at 178,967 to 179,530
_06026
MPMX19_06027: MPMX19_06027 - hypothetical protein, at 179,699 to 180,925
_06027
MPMX19_06028: MPMX19_06028 - hypothetical protein, at 180,910 to 181,719
_06028
MPMX19_06029: MPMX19_06029 - Hydroxyacylglutathione hydrolase GloB, at 181,774 to 182,541
_06029
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 179.119 kb on - strand, within MPMX19_06026 at 179.551 kb on - strand at 179.563 kb on + strand at 179.563 kb on + strand at 179.564 kb on - strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.673 kb on + strand at 179.674 kb on - strand at 179.674 kb on - strand at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 180.650 kb on - strand, within MPMX19_06027 at 180.923 kb on + strand at 180.923 kb on + strand at 181.574 kb on + strand, within MPMX19_06028 at 181.574 kb on + strand, within MPMX19_06028 at 181.575 kb on - strand, within MPMX19_06028 at 181.575 kb on - strand, within MPMX19_06028 at 181.575 kb on - strand, within MPMX19_06028 at 181.586 kb on + strand, within MPMX19_06028 at 181.586 kb on + strand, within MPMX19_06028 at 181.685 kb on + strand at 181.685 kb on + strand at 181.685 kb on + strand at 181.685 kb on + strand at 181.685 kb on + strand at 181.686 kb on - strand at 181.686 kb on - strand at 181.686 kb on - strand at 181.686 kb on - strand at 181.686 kb on - strand at 181.686 kb on - strand at 181.686 kb on - strand at 181.707 kb on + strand at 181.707 kb on + strand at 181.707 kb on + strand at 181.708 kb on - strand at 181.708 kb on - strand at 181.708 kb on - strand at 181.708 kb on - strand at 181.715 kb on + strand at 181.715 kb on + strand at 181.715 kb on + strand at 181.716 kb on - strand at 181.716 kb on - strand at 181.716 kb on - strand at 181.716 kb on - strand at 181.716 kb on - strand at 181.722 kb on + strand at 181.723 kb on - strand at 181.723 kb on - strand at 181.733 kb on + strand at 181.733 kb on + strand at 181.733 kb on + strand at 181.734 kb on - strand at 181.748 kb on - strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.920 kb on + strand, within MPMX19_06029 at 181.920 kb on + strand, within MPMX19_06029 at 181.920 kb on + strand, within MPMX19_06029 at 181.920 kb on + strand, within MPMX19_06029 at 181.921 kb on - strand, within MPMX19_06029 at 181.921 kb on - strand, within MPMX19_06029
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 178,893 - +0.2 178,893 - -0.6 178,893 - +0.8 178,893 - -0.2 178,893 - -0.2 178,968 + +0.1 178,968 + -0.2 178,968 + -1.7 178,968 + +1.2 178,968 + -0.8 178,969 - +1.8 178,969 - -1.0 178,969 - -0.0 178,969 - -0.2 178,969 - -0.4 178,969 - +0.6 179,119 - MPMX19_06026 0.27 +0.8 179,551 - +0.4 179,563 + -0.8 179,563 + -0.2 179,564 - -0.9 179,627 + +0.5 179,627 + -0.4 179,627 + +0.2 179,627 + -0.2 179,673 + +0.3 179,674 - -1.8 179,674 - +0.4 179,927 + MPMX19_06027 0.19 -1.4 179,927 + MPMX19_06027 0.19 +0.3 179,927 + MPMX19_06027 0.19 -0.9 179,927 + MPMX19_06027 0.19 -1.2 179,927 + MPMX19_06027 0.19 +0.5 179,928 - MPMX19_06027 0.19 +0.5 179,928 - MPMX19_06027 0.19 -1.5 179,928 - MPMX19_06027 0.19 -1.5 179,928 - MPMX19_06027 0.19 -1.9 179,928 - MPMX19_06027 0.19 -1.2 179,928 - MPMX19_06027 0.19 -1.5 179,928 - MPMX19_06027 0.19 -1.0 179,928 - MPMX19_06027 0.19 -0.4 180,650 - MPMX19_06027 0.78 +0.7 180,923 + +1.1 180,923 + +1.0 181,574 + MPMX19_06028 0.82 -0.7 181,574 + MPMX19_06028 0.82 +1.0 181,575 - MPMX19_06028 0.82 -0.8 181,575 - MPMX19_06028 0.82 -1.3 181,575 - MPMX19_06028 0.82 -1.4 181,586 + MPMX19_06028 0.83 -0.6 181,586 + MPMX19_06028 0.83 -1.4 181,685 + -0.2 181,685 + +0.2 181,685 + -1.9 181,685 + +0.7 181,685 + -0.5 181,686 - -0.0 181,686 - -1.6 181,686 - -0.4 181,686 - -0.4 181,686 - -0.9 181,686 - -1.0 181,686 - -0.3 181,707 + -2.0 181,707 + +0.2 181,707 + -2.5 181,708 - -0.7 181,708 - -1.5 181,708 - -1.7 181,708 - -1.1 181,715 + -0.6 181,715 + -0.4 181,715 + -0.3 181,716 - +0.6 181,716 - -0.6 181,716 - -1.2 181,716 - -1.4 181,716 - -1.5 181,722 + +0.9 181,723 - +0.6 181,723 - -1.4 181,733 + -0.9 181,733 + -2.6 181,733 + -1.0 181,734 - -2.8 181,748 - -0.5 181,810 + -0.4 181,810 + -0.7 181,810 + +1.1 181,810 + -1.0 181,810 + -0.4 181,810 + -0.4 181,810 + +1.4 181,810 + -1.0 181,810 + -1.0 181,810 + -0.8 181,810 + +0.8 181,810 + +0.9 181,810 + -0.3 181,810 + +0.1 181,810 + -0.2 181,810 + +1.2 181,810 + +0.5 181,810 + -0.5 181,810 + -0.4 181,810 + -0.9 181,810 + -0.8 181,810 + +0.7 181,810 + -1.5 181,810 + -0.8 181,810 + -1.5 181,810 + -0.2 181,810 + -0.7 181,810 + +0.4 181,810 + +0.1 181,810 + -0.4 181,810 + +1.8 181,810 + -0.5 181,810 + -0.4 181,810 + -1.2 181,810 + -0.2 181,810 + -0.7 181,810 + -0.9 181,810 + -1.2 181,810 + -1.0 181,810 + +0.0 181,810 + +0.8 181,810 + -0.0 181,810 + +0.9 181,810 + -1.2 181,810 + -0.3 181,810 + -1.7 181,810 + -2.1 181,810 + -0.3 181,810 + -1.5 181,810 + -0.3 181,810 + -1.0 181,810 + -0.8 181,810 + -0.9 181,810 + -0.9 181,810 + +0.8 181,810 + +0.3 181,810 + +0.8 181,810 + -0.8 181,810 + -0.6 181,810 + +0.3 181,810 + +0.1 181,810 + +0.1 181,811 - -1.2 181,811 - -1.0 181,811 - -0.4 181,811 - +0.5 181,811 - -0.1 181,811 - -1.2 181,811 - +0.0 181,811 - +0.9 181,811 - +0.3 181,811 - -1.5 181,811 - -0.9 181,811 - +0.2 181,811 - +0.5 181,811 - -1.1 181,811 - +0.6 181,811 - +0.4 181,811 - -0.5 181,811 - -0.9 181,811 - +0.5 181,811 - +0.4 181,811 - -1.5 181,811 - -0.9 181,811 - +0.2 181,811 - +0.4 181,811 - -0.1 181,811 - -0.4 181,811 - -0.1 181,811 - +0.8 181,811 - +0.1 181,811 - -1.4 181,811 - -1.4 181,811 - +0.0 181,811 - -1.0 181,811 - +2.2 181,811 - -1.4 181,811 - +2.1 181,811 - -0.3 181,811 - +0.3 181,811 - +0.1 181,811 - -0.8 181,811 - -0.9 181,811 - -1.2 181,811 - -0.3 181,811 - -0.7 181,811 - -0.1 181,811 - -0.1 181,811 - -1.1 181,811 - -0.7 181,811 - +0.4 181,811 - -0.5 181,811 - -0.2 181,811 - -0.3 181,811 - +0.6 181,811 - -0.3 181,811 - +0.1 181,811 - -1.5 181,811 - -0.8 181,811 - -0.3 181,811 - -1.0 181,811 - +0.1 181,811 - -0.7 181,811 - -0.7 181,811 - -0.6 181,811 - -0.7 181,811 - -0.9 181,811 - -1.5 181,811 - -0.4 181,811 - -1.6 181,811 - -0.0 181,811 - -2.1 181,811 - -0.1 181,811 - -0.2 181,811 - -1.3 181,811 - +0.1 181,811 - -2.4 181,811 - +0.7 181,811 - -0.8 181,812 + -0.6 181,812 + -0.8 181,812 + -2.2 181,812 + -0.4 181,812 + -0.3 181,812 + -0.3 181,812 + -1.4 181,812 + -0.5 181,812 + +0.5 181,812 + -0.1 181,812 + -2.1 181,812 + -0.7 181,812 + -1.3 181,812 + +1.3 181,812 + -2.2 181,812 + +0.5 181,812 + -0.1 181,812 + -0.8 181,812 + -0.4 181,812 + -1.0 181,812 + +0.8 181,812 + +0.5 181,812 + -0.5 181,812 + -0.5 181,812 + -0.8 181,812 + -0.6 181,812 + +0.2 181,812 + -0.5 181,812 + +0.1 181,812 + -2.0 181,812 + -0.3 181,812 + -0.7 181,813 - -1.4 181,813 - +0.4 181,813 - -0.0 181,813 - -0.3 181,813 - -0.5 181,813 - -0.0 181,813 - -1.9 181,813 - +1.0 181,813 - -0.4 181,813 - +0.5 181,813 - +0.6 181,813 - +0.6 181,813 - -0.7 181,813 - -0.5 181,813 - -0.5 181,813 - -0.0 181,813 - +0.8 181,813 - -2.1 181,813 - +0.2 181,813 - -0.4 181,813 - -0.6 181,813 - -0.4 181,813 - +0.6 181,813 - -0.0 181,813 - +0.7 181,813 - -1.0 181,813 - +0.1 181,813 - +0.1 181,813 - +1.8 181,813 - +0.3 181,813 - -0.1 181,813 - -1.4 181,813 - -0.2 181,813 - +0.2 181,813 - -1.0 181,813 - -0.1 181,813 - -0.3 181,813 - -0.1 181,813 - +0.1 181,816 + -1.1 181,816 + -0.7 181,816 + -0.5 181,816 + -0.9 181,816 + -1.1 181,816 + -0.4 181,816 + -0.6 181,816 + +0.2 181,816 + -0.0 181,816 + -0.2 181,816 + -1.4 181,816 + -0.3 181,816 + -1.2 181,816 + +1.8 181,816 + -0.1 181,816 + -0.5 181,816 + -0.2 181,816 + -0.9 181,816 + -0.6 181,816 + -1.4 181,816 + +0.4 181,816 + +0.1 181,816 + -1.4 181,816 + -1.8 181,816 + +1.6 181,816 + +0.8 181,816 + -0.1 181,816 + +0.6 181,816 + -0.0 181,816 + +1.2 181,816 + -0.5 181,816 + -0.9 181,816 + -0.7 181,816 + +2.1 181,816 + +0.8 181,816 + -0.6 181,816 + +0.2 181,816 + +1.2 181,816 + -0.4 181,816 + +0.4 181,816 + +0.3 181,816 + -0.7 181,816 + -0.7 181,816 + +0.7 181,816 + -0.7 181,816 + -0.2 181,817 - -1.4 181,817 - -0.0 181,817 - +0.2 181,817 - -0.4 181,817 - -0.5 181,817 - -1.7 181,817 - -1.5 181,817 - -1.2 181,817 - -0.7 181,817 - +1.1 181,817 - -1.8 181,817 - -0.5 181,817 - -1.4 181,817 - -1.6 181,817 - +0.1 181,817 - -0.9 181,817 - -2.1 181,817 - +0.6 181,817 - +1.2 181,817 - -0.3 181,817 - +0.6 181,817 - -0.2 181,817 - -0.6 181,817 - -0.5 181,817 - +1.1 181,817 - +0.6 181,817 - -0.1 181,817 - +0.2 181,817 - -0.9 181,817 - +0.1 181,817 - +1.2 181,817 - -1.5 181,817 - -1.4 181,817 - -0.3 181,817 - -0.2 181,817 - +0.8 181,817 - -2.5 181,920 + MPMX19_06029 0.19 -1.3 181,920 + MPMX19_06029 0.19 +1.8 181,920 + MPMX19_06029 0.19 -2.1 181,920 + MPMX19_06029 0.19 -0.1 181,921 - MPMX19_06029 0.19 +0.4 181,921 - MPMX19_06029 0.19 -2.2
Or see this region's nucleotide sequence