Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05966 and MPMX19_05967 are separated by 187 nucleotides MPMX19_05967 and MPMX19_05968 overlap by 4 nucleotides
MPMX19_05966: MPMX19_05966 - hypothetical protein, at 115,588 to 117,765
_05966
MPMX19_05967: MPMX19_05967 - D-erythritol 1-phosphate dehydrogenase, at 117,953 to 119,524
_05967
MPMX19_05968: MPMX19_05968 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 119,521 to 120,624
_05968
Position (kb)
117
118
119
120 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 117.321 kb on + strand, within MPMX19_05966 at 117.321 kb on + strand, within MPMX19_05966 at 117.321 kb on + strand, within MPMX19_05966 at 117.322 kb on - strand, within MPMX19_05966 at 117.322 kb on - strand, within MPMX19_05966 at 117.322 kb on - strand, within MPMX19_05966 at 117.322 kb on - strand, within MPMX19_05966 at 117.798 kb on + strand at 117.798 kb on + strand at 117.798 kb on + strand at 117.798 kb on + strand at 117.798 kb on + strand at 117.799 kb on - strand at 117.799 kb on - strand at 117.799 kb on - strand at 117.799 kb on - strand at 117.799 kb on - strand at 117.799 kb on - strand at 117.799 kb on - strand at 117.831 kb on - strand at 117.891 kb on + strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 118.128 kb on - strand, within MPMX19_05967 at 118.137 kb on - strand, within MPMX19_05967 at 118.287 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.755 kb on - strand, within MPMX19_05967 at 118.755 kb on - strand, within MPMX19_05967 at 118.845 kb on - strand, within MPMX19_05967 at 118.845 kb on - strand, within MPMX19_05967 at 118.845 kb on - strand, within MPMX19_05967 at 118.845 kb on - strand, within MPMX19_05967 at 118.845 kb on - strand, within MPMX19_05967 at 118.845 kb on - strand, within MPMX19_05967 at 118.869 kb on - strand, within MPMX19_05967 at 118.911 kb on - strand, within MPMX19_05967 at 118.911 kb on - strand, within MPMX19_05967 at 118.911 kb on - strand, within MPMX19_05967 at 118.974 kb on - strand, within MPMX19_05967 at 118.974 kb on - strand, within MPMX19_05967 at 118.974 kb on - strand, within MPMX19_05967 at 119.476 kb on + strand at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.759 kb on - strand, within MPMX19_05968 at 119.776 kb on + strand, within MPMX19_05968 at 119.777 kb on - strand, within MPMX19_05968 at 119.777 kb on - strand, within MPMX19_05968 at 119.777 kb on - strand, within MPMX19_05968 at 119.777 kb on - strand, within MPMX19_05968 at 119.777 kb on - strand, within MPMX19_05968 at 119.893 kb on + strand, within MPMX19_05968 at 119.893 kb on + strand, within MPMX19_05968 at 119.893 kb on + strand, within MPMX19_05968 at 119.894 kb on - strand, within MPMX19_05968 at 119.894 kb on - strand, within MPMX19_05968 at 120.013 kb on + strand, within MPMX19_05968 at 120.013 kb on + strand, within MPMX19_05968 at 120.013 kb on + strand, within MPMX19_05968 at 120.013 kb on + strand, within MPMX19_05968 at 120.013 kb on + strand, within MPMX19_05968 at 120.013 kb on + strand, within MPMX19_05968 at 120.014 kb on - strand, within MPMX19_05968 at 120.014 kb on - strand, within MPMX19_05968 at 120.014 kb on - strand, within MPMX19_05968 at 120.014 kb on - strand, within MPMX19_05968 at 120.014 kb on - strand, within MPMX19_05968 at 120.014 kb on - strand, within MPMX19_05968 at 120.082 kb on + strand, within MPMX19_05968 at 120.082 kb on + strand, within MPMX19_05968 at 120.082 kb on + strand, within MPMX19_05968 at 120.082 kb on + strand, within MPMX19_05968 at 120.083 kb on - strand, within MPMX19_05968 at 120.083 kb on - strand, within MPMX19_05968 at 120.410 kb on + strand, within MPMX19_05968 at 120.410 kb on + strand, within MPMX19_05968 at 120.410 kb on + strand, within MPMX19_05968 at 120.410 kb on + strand, within MPMX19_05968 at 120.410 kb on + strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 117,321 + MPMX19_05966 0.80 -1.1 117,321 + MPMX19_05966 0.80 -2.1 117,321 + MPMX19_05966 0.80 +0.3 117,322 - MPMX19_05966 0.80 -1.2 117,322 - MPMX19_05966 0.80 -0.1 117,322 - MPMX19_05966 0.80 -0.1 117,322 - MPMX19_05966 0.80 -0.5 117,798 + +0.2 117,798 + -0.5 117,798 + -1.7 117,798 + -1.1 117,798 + +0.8 117,799 - -1.1 117,799 - -0.8 117,799 - +0.1 117,799 - +0.5 117,799 - -0.3 117,799 - +0.2 117,799 - +0.6 117,831 - -0.4 117,891 + +0.1 117,892 - -0.3 117,892 - -0.9 117,892 - -0.5 117,892 - -0.5 117,892 - +1.1 117,892 - +0.6 117,892 - -0.5 117,892 - +0.6 117,892 - -1.0 117,892 - -0.2 117,892 - -0.2 117,892 - +0.3 117,892 - +0.1 117,892 - +0.6 117,892 - -1.5 118,128 - MPMX19_05967 0.11 +0.2 118,137 - MPMX19_05967 0.12 +0.2 118,287 - MPMX19_05967 0.21 -1.9 118,710 - MPMX19_05967 0.48 -2.1 118,710 - MPMX19_05967 0.48 -0.4 118,710 - MPMX19_05967 0.48 +0.1 118,710 - MPMX19_05967 0.48 -1.2 118,710 - MPMX19_05967 0.48 +0.4 118,710 - MPMX19_05967 0.48 -1.2 118,710 - MPMX19_05967 0.48 +0.0 118,755 - MPMX19_05967 0.51 -1.4 118,755 - MPMX19_05967 0.51 +0.8 118,845 - MPMX19_05967 0.57 -1.5 118,845 - MPMX19_05967 0.57 -0.8 118,845 - MPMX19_05967 0.57 -0.8 118,845 - MPMX19_05967 0.57 -0.1 118,845 - MPMX19_05967 0.57 -0.2 118,845 - MPMX19_05967 0.57 -1.1 118,869 - MPMX19_05967 0.58 -0.0 118,911 - MPMX19_05967 0.61 -1.8 118,911 - MPMX19_05967 0.61 +0.1 118,911 - MPMX19_05967 0.61 -1.7 118,974 - MPMX19_05967 0.65 -1.5 118,974 - MPMX19_05967 0.65 -0.9 118,974 - MPMX19_05967 0.65 +2.5 119,476 + -0.2 119,758 + MPMX19_05968 0.21 +0.4 119,758 + MPMX19_05968 0.21 -0.5 119,758 + MPMX19_05968 0.21 -0.8 119,758 + MPMX19_05968 0.21 -0.3 119,758 + MPMX19_05968 0.21 +0.6 119,758 + MPMX19_05968 0.21 -0.4 119,758 + MPMX19_05968 0.21 -0.0 119,758 + MPMX19_05968 0.21 +0.2 119,759 - MPMX19_05968 0.22 +0.1 119,776 + MPMX19_05968 0.23 +0.6 119,777 - MPMX19_05968 0.23 +0.2 119,777 - MPMX19_05968 0.23 -0.6 119,777 - MPMX19_05968 0.23 -0.8 119,777 - MPMX19_05968 0.23 -2.5 119,777 - MPMX19_05968 0.23 -0.5 119,893 + MPMX19_05968 0.34 -0.5 119,893 + MPMX19_05968 0.34 +0.1 119,893 + MPMX19_05968 0.34 +1.5 119,894 - MPMX19_05968 0.34 -1.1 119,894 - MPMX19_05968 0.34 -0.2 120,013 + MPMX19_05968 0.45 +0.2 120,013 + MPMX19_05968 0.45 +0.5 120,013 + MPMX19_05968 0.45 -2.0 120,013 + MPMX19_05968 0.45 -0.3 120,013 + MPMX19_05968 0.45 +0.5 120,013 + MPMX19_05968 0.45 -0.9 120,014 - MPMX19_05968 0.45 -0.9 120,014 - MPMX19_05968 0.45 -1.3 120,014 - MPMX19_05968 0.45 -0.7 120,014 - MPMX19_05968 0.45 -0.2 120,014 - MPMX19_05968 0.45 +0.6 120,014 - MPMX19_05968 0.45 +0.5 120,082 + MPMX19_05968 0.51 +1.8 120,082 + MPMX19_05968 0.51 -0.6 120,082 + MPMX19_05968 0.51 -0.2 120,082 + MPMX19_05968 0.51 -1.0 120,083 - MPMX19_05968 0.51 -0.0 120,083 - MPMX19_05968 0.51 -1.1 120,410 + MPMX19_05968 0.81 +0.1 120,410 + MPMX19_05968 0.81 +0.1 120,410 + MPMX19_05968 0.81 +2.5 120,410 + MPMX19_05968 0.81 +0.8 120,410 + MPMX19_05968 0.81 +0.2 120,411 - MPMX19_05968 0.81 -1.1 120,411 - MPMX19_05968 0.81 +0.5 120,411 - MPMX19_05968 0.81 +0.5 120,411 - MPMX19_05968 0.81 +0.8 120,411 - MPMX19_05968 0.81 -0.2 120,411 - MPMX19_05968 0.81 -2.0 120,411 - MPMX19_05968 0.81 -0.5
Or see this region's nucleotide sequence