Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05918 and MPMX19_05919 are separated by 4 nucleotides MPMX19_05919 and MPMX19_05920 are separated by 9 nucleotides MPMX19_05920 and MPMX19_05921 are separated by 45 nucleotides MPMX19_05921 and MPMX19_05922 are separated by 28 nucleotides
MPMX19_05918: MPMX19_05918 - Flagellar biosynthetic protein FliP, at 53,273 to 54,163
_05918
MPMX19_05919: MPMX19_05919 - hypothetical protein, at 54,168 to 54,464
_05919
MPMX19_05920: MPMX19_05920 - Flagellar motor switch protein FliG, at 54,474 to 55,502
_05920
MPMX19_05921: MPMX19_05921 - hypothetical protein, at 55,548 to 56,270
_05921
MPMX19_05922: MPMX19_05922 - putative oxidoreductase/MSMEI_2347, at 56,299 to 57,135
_05922
Position (kb)
54
55
56 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 53.876 kb on - strand, within MPMX19_05918 at 54.152 kb on + strand at 54.152 kb on + strand at 54.152 kb on + strand at 54.152 kb on + strand at 54.152 kb on + strand at 54.152 kb on + strand at 54.153 kb on - strand at 54.153 kb on - strand at 54.153 kb on - strand at 54.153 kb on - strand at 54.153 kb on - strand at 54.153 kb on - strand at 54.153 kb on - strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.504 kb on + strand at 54.505 kb on - strand at 54.505 kb on - strand at 54.505 kb on - strand at 54.505 kb on - strand at 54.505 kb on - strand at 54.505 kb on - strand at 54.505 kb on - strand at 54.505 kb on - strand at 54.505 kb on - strand at 54.505 kb on - strand at 54.720 kb on + strand, within MPMX19_05920 at 54.720 kb on + strand, within MPMX19_05920 at 54.721 kb on - strand, within MPMX19_05920 at 54.721 kb on - strand, within MPMX19_05920 at 54.721 kb on - strand, within MPMX19_05920 at 54.721 kb on - strand, within MPMX19_05920 at 54.858 kb on + strand, within MPMX19_05920 at 54.858 kb on + strand, within MPMX19_05920 at 54.858 kb on + strand, within MPMX19_05920 at 54.859 kb on - strand, within MPMX19_05920 at 54.859 kb on - strand, within MPMX19_05920 at 54.859 kb on - strand, within MPMX19_05920 at 54.859 kb on - strand, within MPMX19_05920 at 54.859 kb on - strand, within MPMX19_05920 at 54.859 kb on - strand, within MPMX19_05920 at 54.859 kb on - strand, within MPMX19_05920 at 54.859 kb on - strand, within MPMX19_05920 at 54.859 kb on - strand, within MPMX19_05920 at 54.859 kb on - strand, within MPMX19_05920 at 54.859 kb on - strand, within MPMX19_05920 at 54.873 kb on + strand, within MPMX19_05920 at 54.874 kb on - strand, within MPMX19_05920 at 54.874 kb on - strand, within MPMX19_05920 at 55.056 kb on + strand, within MPMX19_05920 at 55.056 kb on + strand, within MPMX19_05920 at 55.057 kb on - strand, within MPMX19_05920 at 55.057 kb on - strand, within MPMX19_05920 at 55.057 kb on - strand, within MPMX19_05920 at 55.373 kb on + strand, within MPMX19_05920 at 55.373 kb on + strand, within MPMX19_05920 at 55.373 kb on + strand, within MPMX19_05920 at 55.373 kb on + strand, within MPMX19_05920 at 55.373 kb on + strand, within MPMX19_05920 at 55.374 kb on - strand, within MPMX19_05920 at 55.374 kb on - strand, within MPMX19_05920 at 55.374 kb on - strand, within MPMX19_05920 at 55.374 kb on - strand, within MPMX19_05920 at 55.497 kb on + strand at 55.497 kb on + strand at 55.497 kb on + strand at 55.498 kb on - strand at 55.498 kb on - strand at 55.498 kb on - strand at 56.162 kb on + strand, within MPMX19_05921 at 56.162 kb on + strand, within MPMX19_05921 at 56.162 kb on + strand, within MPMX19_05921 at 56.163 kb on - strand, within MPMX19_05921 at 56.163 kb on - strand, within MPMX19_05921
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 53,876 - MPMX19_05918 0.68 -1.2 54,152 + +0.2 54,152 + -1.0 54,152 + -0.5 54,152 + -0.0 54,152 + +0.3 54,152 + -0.4 54,153 - +0.7 54,153 - -1.9 54,153 - -0.6 54,153 - -0.5 54,153 - +0.6 54,153 - +2.2 54,153 - -0.4 54,504 + -0.5 54,504 + -0.8 54,504 + -2.7 54,504 + +0.2 54,504 + +0.1 54,504 + +0.4 54,504 + -0.1 54,504 + +0.8 54,504 + -0.4 54,504 + -0.5 54,504 + -0.6 54,504 + +0.6 54,504 + -1.1 54,504 + +0.2 54,505 - -0.1 54,505 - +0.1 54,505 - -0.4 54,505 - -1.0 54,505 - -1.2 54,505 - +0.1 54,505 - -0.5 54,505 - -2.0 54,505 - +0.2 54,505 - -0.2 54,720 + MPMX19_05920 0.24 +0.5 54,720 + MPMX19_05920 0.24 -1.3 54,721 - MPMX19_05920 0.24 -1.4 54,721 - MPMX19_05920 0.24 -0.6 54,721 - MPMX19_05920 0.24 -0.5 54,721 - MPMX19_05920 0.24 +0.9 54,858 + MPMX19_05920 0.37 +1.0 54,858 + MPMX19_05920 0.37 +0.2 54,858 + MPMX19_05920 0.37 +0.6 54,859 - MPMX19_05920 0.37 -0.5 54,859 - MPMX19_05920 0.37 -1.3 54,859 - MPMX19_05920 0.37 -0.3 54,859 - MPMX19_05920 0.37 -0.3 54,859 - MPMX19_05920 0.37 +0.8 54,859 - MPMX19_05920 0.37 +1.2 54,859 - MPMX19_05920 0.37 +0.1 54,859 - MPMX19_05920 0.37 -0.4 54,859 - MPMX19_05920 0.37 -0.0 54,859 - MPMX19_05920 0.37 +0.8 54,859 - MPMX19_05920 0.37 -1.4 54,873 + MPMX19_05920 0.39 -0.4 54,874 - MPMX19_05920 0.39 -0.5 54,874 - MPMX19_05920 0.39 +1.8 55,056 + MPMX19_05920 0.57 -0.4 55,056 + MPMX19_05920 0.57 +1.1 55,057 - MPMX19_05920 0.57 -0.1 55,057 - MPMX19_05920 0.57 -1.0 55,057 - MPMX19_05920 0.57 -0.9 55,373 + MPMX19_05920 0.87 -0.8 55,373 + MPMX19_05920 0.87 +1.1 55,373 + MPMX19_05920 0.87 +0.4 55,373 + MPMX19_05920 0.87 -0.4 55,373 + MPMX19_05920 0.87 -1.5 55,374 - MPMX19_05920 0.87 +1.2 55,374 - MPMX19_05920 0.87 +0.8 55,374 - MPMX19_05920 0.87 +0.6 55,374 - MPMX19_05920 0.87 -0.8 55,497 + +0.5 55,497 + +0.2 55,497 + -0.7 55,498 - -0.8 55,498 - +0.9 55,498 - +0.2 56,162 + MPMX19_05921 0.85 +0.6 56,162 + MPMX19_05921 0.85 -1.5 56,162 + MPMX19_05921 0.85 -0.3 56,163 - MPMX19_05921 0.85 -0.2 56,163 - MPMX19_05921 0.85 -1.0
Or see this region's nucleotide sequence