Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05835

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05834 and MPMX19_05835 are separated by 251 nucleotidesMPMX19_05835 and MPMX19_05836 are separated by 219 nucleotides MPMX19_05834: MPMX19_05834 - Hydrogen peroxide-inducible genes activator, at 565,070 to 565,981 _05834 MPMX19_05835: MPMX19_05835 - Alkyl hydroperoxide reductase C, at 566,233 to 566,796 _05835 MPMX19_05836: MPMX19_05836 - Alkyl hydroperoxide reductase subunit F, at 567,016 to 568,806 _05836 Position (kb) 566 567Strain fitness (log2 ratio) -2 -1 0 1at 565.602 kb on + strand, within MPMX19_05834at 565.602 kb on + strand, within MPMX19_05834at 565.602 kb on + strand, within MPMX19_05834at 565.602 kb on + strand, within MPMX19_05834at 565.603 kb on - strand, within MPMX19_05834at 565.603 kb on - strand, within MPMX19_05834at 565.947 kb on + strandat 565.947 kb on + strandat 565.948 kb on - strandat 565.948 kb on - strandat 565.989 kb on + strandat 566.055 kb on + strandat 566.055 kb on + strandat 566.055 kb on + strandat 566.056 kb on - strandat 566.146 kb on + strandat 566.146 kb on + strandat 566.146 kb on + strandat 566.146 kb on + strandat 566.146 kb on + strandat 566.146 kb on + strandat 566.147 kb on - strandat 566.147 kb on - strandat 566.179 kb on + strandat 566.256 kb on + strandat 566.257 kb on - strandat 566.257 kb on - strandat 566.278 kb on + strandat 566.279 kb on - strandat 566.404 kb on + strand, within MPMX19_05835at 566.404 kb on + strand, within MPMX19_05835at 566.404 kb on + strand, within MPMX19_05835at 566.404 kb on + strand, within MPMX19_05835at 566.404 kb on + strand, within MPMX19_05835at 566.437 kb on + strand, within MPMX19_05835at 566.437 kb on + strand, within MPMX19_05835at 566.437 kb on + strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.440 kb on - strand, within MPMX19_05835at 566.512 kb on + strand, within MPMX19_05835at 566.512 kb on + strand, within MPMX19_05835at 566.512 kb on + strand, within MPMX19_05835at 566.512 kb on + strand, within MPMX19_05835at 566.513 kb on - strand, within MPMX19_05835at 566.513 kb on - strand, within MPMX19_05835at 566.513 kb on - strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.807 kb on + strandat 566.807 kb on + strandat 566.807 kb on + strandat 566.808 kb on - strandat 566.895 kb on + strandat 566.896 kb on - strandat 566.896 kb on - strandat 566.933 kb on - strandat 567.164 kb on - strandat 567.164 kb on - strandat 567.164 kb on - strandat 567.164 kb on - strandat 567.247 kb on + strand, within MPMX19_05836at 567.247 kb on + strand, within MPMX19_05836at 567.247 kb on + strand, within MPMX19_05836at 567.247 kb on + strand, within MPMX19_05836at 567.247 kb on + strand, within MPMX19_05836at 567.247 kb on + strand, within MPMX19_05836at 567.247 kb on + strand, within MPMX19_05836at 567.247 kb on + strand, within MPMX19_05836at 567.248 kb on - strand, within MPMX19_05836at 567.248 kb on - strand, within MPMX19_05836at 567.248 kb on - strand, within MPMX19_05836at 567.248 kb on - strand, within MPMX19_05836at 567.248 kb on - strand, within MPMX19_05836at 567.248 kb on - strand, within MPMX19_05836at 567.248 kb on - strand, within MPMX19_05836at 567.248 kb on - strand, within MPMX19_05836at 567.248 kb on - strand, within MPMX19_05836at 567.577 kb on + strand, within MPMX19_05836at 567.577 kb on + strand, within MPMX19_05836at 567.578 kb on - strand, within MPMX19_05836at 567.578 kb on - strand, within MPMX19_05836at 567.578 kb on - strand, within MPMX19_05836at 567.578 kb on - strand, within MPMX19_05836

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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565,602 + MPMX19_05834 0.58 +0.3
565,602 + MPMX19_05834 0.58 +0.5
565,602 + MPMX19_05834 0.58 +0.3
565,602 + MPMX19_05834 0.58 -0.5
565,603 - MPMX19_05834 0.58 -0.4
565,603 - MPMX19_05834 0.58 +0.3
565,947 + -0.4
565,947 + -1.4
565,948 - +0.3
565,948 - -0.8
565,989 + -1.5
566,055 + +0.2
566,055 + -0.5
566,055 + -0.7
566,056 - -1.9
566,146 + -0.8
566,146 + -1.4
566,146 + -1.7
566,146 + -0.6
566,146 + -0.4
566,146 + -1.3
566,147 - +0.2
566,147 - -1.3
566,179 + -0.1
566,256 + -0.3
566,257 - +0.3
566,257 - +1.7
566,278 + +0.2
566,279 - -1.0
566,404 + MPMX19_05835 0.30 -0.3
566,404 + MPMX19_05835 0.30 -1.4
566,404 + MPMX19_05835 0.30 -0.7
566,404 + MPMX19_05835 0.30 +0.9
566,404 + MPMX19_05835 0.30 +0.3
566,437 + MPMX19_05835 0.36 -1.0
566,437 + MPMX19_05835 0.36 +0.2
566,437 + MPMX19_05835 0.36 +0.8
566,438 - MPMX19_05835 0.36 -1.6
566,438 - MPMX19_05835 0.36 -0.6
566,438 - MPMX19_05835 0.36 -1.4
566,438 - MPMX19_05835 0.36 +0.5
566,438 - MPMX19_05835 0.36 -0.7
566,438 - MPMX19_05835 0.36 -1.0
566,438 - MPMX19_05835 0.36 -0.1
566,440 - MPMX19_05835 0.37 +1.4
566,512 + MPMX19_05835 0.49 -0.3
566,512 + MPMX19_05835 0.49 -2.6
566,512 + MPMX19_05835 0.49 -2.3
566,512 + MPMX19_05835 0.49 +0.5
566,513 - MPMX19_05835 0.50 +0.7
566,513 - MPMX19_05835 0.50 +1.3
566,513 - MPMX19_05835 0.50 +0.4
566,701 + MPMX19_05835 0.83 +0.3
566,701 + MPMX19_05835 0.83 +0.4
566,701 + MPMX19_05835 0.83 -1.2
566,701 + MPMX19_05835 0.83 -0.7
566,701 + MPMX19_05835 0.83 -0.4
566,701 + MPMX19_05835 0.83 -1.2
566,701 + MPMX19_05835 0.83 -1.1
566,701 + MPMX19_05835 0.83 +0.3
566,701 + MPMX19_05835 0.83 -2.3
566,702 - MPMX19_05835 0.83 -0.8
566,702 - MPMX19_05835 0.83 -1.3
566,702 - MPMX19_05835 0.83 +0.5
566,702 - MPMX19_05835 0.83 +1.2
566,702 - MPMX19_05835 0.83 +0.2
566,702 - MPMX19_05835 0.83 -0.6
566,702 - MPMX19_05835 0.83 -0.1
566,794 + -0.0
566,794 + +0.3
566,794 + -1.1
566,794 + -1.2
566,794 + +0.7
566,794 + +0.5
566,794 + -1.4
566,794 + -0.8
566,794 + -0.0
566,794 + +0.2
566,794 + -2.4
566,794 + +0.3
566,795 - +0.0
566,795 - -0.1
566,795 - -1.6
566,795 - -0.4
566,795 - -1.2
566,795 - +1.0
566,795 - +0.3
566,795 - -1.1
566,807 + -0.1
566,807 + +0.0
566,807 + -1.3
566,808 - -1.8
566,895 + -1.3
566,896 - -2.5
566,896 - +1.6
566,933 - +0.5
567,164 - -0.8
567,164 - +0.0
567,164 - +0.2
567,164 - +0.7
567,247 + MPMX19_05836 0.13 -0.3
567,247 + MPMX19_05836 0.13 -1.7
567,247 + MPMX19_05836 0.13 +0.7
567,247 + MPMX19_05836 0.13 +1.1
567,247 + MPMX19_05836 0.13 -1.3
567,247 + MPMX19_05836 0.13 -1.1
567,247 + MPMX19_05836 0.13 -0.6
567,247 + MPMX19_05836 0.13 +0.5
567,248 - MPMX19_05836 0.13 -0.6
567,248 - MPMX19_05836 0.13 -1.1
567,248 - MPMX19_05836 0.13 +0.9
567,248 - MPMX19_05836 0.13 -0.1
567,248 - MPMX19_05836 0.13 +0.5
567,248 - MPMX19_05836 0.13 +1.1
567,248 - MPMX19_05836 0.13 +0.7
567,248 - MPMX19_05836 0.13 -0.6
567,248 - MPMX19_05836 0.13 +1.2
567,577 + MPMX19_05836 0.31 -0.7
567,577 + MPMX19_05836 0.31 -0.3
567,578 - MPMX19_05836 0.31 -1.6
567,578 - MPMX19_05836 0.31 -1.7
567,578 - MPMX19_05836 0.31 -0.1
567,578 - MPMX19_05836 0.31 -0.1

Or see this region's nucleotide sequence