Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05832 and MPMX19_05833 are separated by 53 nucleotides MPMX19_05833 and MPMX19_05834 are separated by 100 nucleotides
MPMX19_05832: MPMX19_05832 - hypothetical protein, at 562,304 to 564,001
_05832
MPMX19_05833: MPMX19_05833 - Cyclohexadienyl dehydrogenase, at 564,055 to 564,969
_05833
MPMX19_05834: MPMX19_05834 - Hydrogen peroxide-inducible genes activator, at 565,070 to 565,981
_05834
Position (kb) 564
565 Strain fitness (log2 ratio) -1
0
1 at 563.999 kb on + strand at 563.999 kb on + strand at 563.999 kb on + strand at 563.999 kb on + strand at 563.999 kb on + strand at 564.000 kb on - strand at 564.000 kb on - strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.057 kb on - strand at 565.602 kb on + strand, within MPMX19_05834 at 565.602 kb on + strand, within MPMX19_05834 at 565.602 kb on + strand, within MPMX19_05834 at 565.602 kb on + strand, within MPMX19_05834 at 565.603 kb on - strand, within MPMX19_05834 at 565.603 kb on - strand, within MPMX19_05834 at 565.947 kb on + strand at 565.947 kb on + strand at 565.948 kb on - strand at 565.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 563,999 + -0.2 563,999 + -0.4 563,999 + -1.1 563,999 + -0.3 563,999 + -0.7 564,000 - -0.0 564,000 - +0.1 564,056 + +0.1 564,056 + -0.5 564,056 + +0.9 564,056 + -1.7 564,056 + -1.5 564,056 + -0.6 564,056 + -1.1 564,056 + -0.3 564,056 + -1.1 564,057 - -1.6 564,057 - -1.2 564,057 - -0.8 564,057 - -0.6 564,057 - -0.1 565,602 + MPMX19_05834 0.58 +0.3 565,602 + MPMX19_05834 0.58 +0.5 565,602 + MPMX19_05834 0.58 +0.3 565,602 + MPMX19_05834 0.58 -0.5 565,603 - MPMX19_05834 0.58 -0.4 565,603 - MPMX19_05834 0.58 +0.3 565,947 + -0.4 565,947 + -1.4 565,948 - +0.3 565,948 - -0.8
Or see this region's nucleotide sequence