Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05815

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05814 and MPMX19_05815 are separated by 17 nucleotidesMPMX19_05815 and MPMX19_05816 are separated by 60 nucleotidesMPMX19_05816 and MPMX19_05817 are separated by 50 nucleotides MPMX19_05814: MPMX19_05814 - Putative hydroxypyruvate reductase, at 541,807 to 543,096 _05814 MPMX19_05815: MPMX19_05815 - hypothetical protein, at 543,114 to 543,884 _05815 MPMX19_05816: MPMX19_05816 - Thiol-disulfide oxidoreductase ResA, at 543,945 to 544,625 _05816 MPMX19_05817: MPMX19_05817 - Argininosuccinate lyase, at 544,676 to 546,124 _05817 Position (kb) 543 544Strain fitness (log2 ratio) -2 -1 0 1 2at 542.473 kb on + strand, within MPMX19_05814at 542.473 kb on + strand, within MPMX19_05814at 542.473 kb on + strand, within MPMX19_05814at 542.473 kb on + strand, within MPMX19_05814at 542.474 kb on - strand, within MPMX19_05814at 542.474 kb on - strand, within MPMX19_05814at 542.474 kb on - strand, within MPMX19_05814at 542.474 kb on - strand, within MPMX19_05814at 542.474 kb on - strand, within MPMX19_05814at 542.474 kb on - strand, within MPMX19_05814at 542.474 kb on - strand, within MPMX19_05814at 542.635 kb on + strand, within MPMX19_05814at 542.635 kb on + strand, within MPMX19_05814at 542.635 kb on + strand, within MPMX19_05814at 542.635 kb on + strand, within MPMX19_05814at 542.635 kb on + strand, within MPMX19_05814at 542.635 kb on + strand, within MPMX19_05814at 542.635 kb on + strand, within MPMX19_05814at 542.635 kb on + strand, within MPMX19_05814at 542.635 kb on + strand, within MPMX19_05814at 542.635 kb on + strand, within MPMX19_05814at 542.636 kb on - strand, within MPMX19_05814at 542.636 kb on - strand, within MPMX19_05814at 542.636 kb on - strand, within MPMX19_05814at 542.636 kb on - strand, within MPMX19_05814at 542.636 kb on - strand, within MPMX19_05814at 542.636 kb on - strand, within MPMX19_05814at 542.636 kb on - strand, within MPMX19_05814at 542.636 kb on - strand, within MPMX19_05814at 542.636 kb on - strand, within MPMX19_05814at 542.636 kb on - strand, within MPMX19_05814at 543.001 kb on + strandat 543.001 kb on + strandat 543.002 kb on - strandat 543.002 kb on - strandat 543.002 kb on - strandat 543.160 kb on + strandat 543.160 kb on + strandat 543.160 kb on + strandat 543.160 kb on + strandat 543.160 kb on + strandat 543.160 kb on + strandat 543.160 kb on + strandat 543.160 kb on + strandat 543.160 kb on + strandat 543.160 kb on + strandat 543.161 kb on - strandat 543.161 kb on - strandat 543.161 kb on - strandat 543.161 kb on - strandat 543.161 kb on - strandat 543.161 kb on - strandat 543.161 kb on - strandat 543.161 kb on - strandat 543.161 kb on - strandat 543.161 kb on - strandat 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.295 kb on + strand, within MPMX19_05815at 543.296 kb on - strand, within MPMX19_05815at 543.296 kb on - strand, within MPMX19_05815at 543.296 kb on - strand, within MPMX19_05815at 543.296 kb on - strand, within MPMX19_05815at 543.296 kb on - strand, within MPMX19_05815at 543.296 kb on - strand, within MPMX19_05815at 543.296 kb on - strand, within MPMX19_05815at 543.296 kb on - strand, within MPMX19_05815at 543.296 kb on - strand, within MPMX19_05815at 543.394 kb on + strand, within MPMX19_05815at 543.394 kb on + strand, within MPMX19_05815at 543.394 kb on + strand, within MPMX19_05815at 543.395 kb on - strand, within MPMX19_05815at 543.395 kb on - strand, within MPMX19_05815at 543.395 kb on - strand, within MPMX19_05815at 543.395 kb on - strand, within MPMX19_05815at 543.532 kb on + strand, within MPMX19_05815at 543.532 kb on + strand, within MPMX19_05815at 543.532 kb on + strand, within MPMX19_05815at 543.533 kb on - strand, within MPMX19_05815at 543.533 kb on - strand, within MPMX19_05815at 543.533 kb on - strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.571 kb on + strand, within MPMX19_05815at 543.572 kb on - strand, within MPMX19_05815at 543.572 kb on - strand, within MPMX19_05815at 543.572 kb on - strand, within MPMX19_05815at 543.572 kb on - strand, within MPMX19_05815at 543.572 kb on - strand, within MPMX19_05815at 543.572 kb on - strand, within MPMX19_05815at 543.572 kb on - strand, within MPMX19_05815at 543.572 kb on - strand, within MPMX19_05815at 543.572 kb on - strand, within MPMX19_05815at 543.911 kb on + strandat 543.911 kb on + strandat 543.911 kb on + strandat 543.911 kb on + strandat 543.911 kb on + strandat 543.911 kb on + strandat 543.912 kb on - strandat 543.912 kb on - strandat 543.924 kb on + strandat 543.924 kb on + strandat 543.924 kb on + strandat 543.925 kb on - strandat 543.925 kb on - strandat 543.925 kb on - strandat 543.925 kb on - strandat 543.925 kb on - strandat 543.925 kb on - strandat 543.925 kb on - strandat 543.925 kb on - strandat 544.196 kb on + strand, within MPMX19_05816at 544.196 kb on + strand, within MPMX19_05816at 544.196 kb on + strand, within MPMX19_05816at 544.196 kb on + strand, within MPMX19_05816at 544.197 kb on - strand, within MPMX19_05816at 544.197 kb on - strand, within MPMX19_05816at 544.197 kb on - strand, within MPMX19_05816at 544.197 kb on - strand, within MPMX19_05816at 544.197 kb on - strand, within MPMX19_05816at 544.197 kb on - strand, within MPMX19_05816at 544.197 kb on - strand, within MPMX19_05816at 544.198 kb on + strand, within MPMX19_05816at 544.198 kb on + strand, within MPMX19_05816at 544.198 kb on + strand, within MPMX19_05816at 544.198 kb on + strand, within MPMX19_05816at 544.198 kb on + strand, within MPMX19_05816at 544.198 kb on + strand, within MPMX19_05816at 544.198 kb on + strand, within MPMX19_05816at 544.198 kb on + strand, within MPMX19_05816at 544.198 kb on + strand, within MPMX19_05816at 544.198 kb on + strand, within MPMX19_05816at 544.199 kb on - strand, within MPMX19_05816at 544.199 kb on - strand, within MPMX19_05816at 544.199 kb on - strand, within MPMX19_05816at 544.199 kb on - strand, within MPMX19_05816at 544.199 kb on - strand, within MPMX19_05816at 544.199 kb on - strand, within MPMX19_05816at 544.199 kb on - strand, within MPMX19_05816at 544.199 kb on - strand, within MPMX19_05816at 544.199 kb on - strand, within MPMX19_05816at 544.199 kb on - strand, within MPMX19_05816at 544.625 kb on + strandat 544.625 kb on + strandat 544.625 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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542,473 + MPMX19_05814 0.52 +0.9
542,473 + MPMX19_05814 0.52 -0.9
542,473 + MPMX19_05814 0.52 -1.0
542,473 + MPMX19_05814 0.52 -0.3
542,474 - MPMX19_05814 0.52 -0.3
542,474 - MPMX19_05814 0.52 +0.5
542,474 - MPMX19_05814 0.52 +0.5
542,474 - MPMX19_05814 0.52 -1.1
542,474 - MPMX19_05814 0.52 +0.6
542,474 - MPMX19_05814 0.52 -0.6
542,474 - MPMX19_05814 0.52 +1.5
542,635 + MPMX19_05814 0.64 +0.7
542,635 + MPMX19_05814 0.64 +0.4
542,635 + MPMX19_05814 0.64 -0.4
542,635 + MPMX19_05814 0.64 -0.6
542,635 + MPMX19_05814 0.64 +0.9
542,635 + MPMX19_05814 0.64 +0.7
542,635 + MPMX19_05814 0.64 -1.1
542,635 + MPMX19_05814 0.64 -0.3
542,635 + MPMX19_05814 0.64 -0.8
542,635 + MPMX19_05814 0.64 +0.2
542,636 - MPMX19_05814 0.64 +0.3
542,636 - MPMX19_05814 0.64 -1.6
542,636 - MPMX19_05814 0.64 -0.6
542,636 - MPMX19_05814 0.64 +0.2
542,636 - MPMX19_05814 0.64 +0.7
542,636 - MPMX19_05814 0.64 -0.3
542,636 - MPMX19_05814 0.64 -0.4
542,636 - MPMX19_05814 0.64 +0.4
542,636 - MPMX19_05814 0.64 -1.6
542,636 - MPMX19_05814 0.64 -1.2
543,001 + +0.7
543,001 + -1.1
543,002 - -0.1
543,002 - -0.6
543,002 - -1.3
543,160 + -1.8
543,160 + -0.9
543,160 + -1.3
543,160 + +0.2
543,160 + +2.3
543,160 + -0.0
543,160 + +0.2
543,160 + -2.7
543,160 + +1.3
543,160 + -0.3
543,161 - +1.1
543,161 - +0.2
543,161 - -0.5
543,161 - -1.1
543,161 - +0.8
543,161 - -1.0
543,161 - +0.4
543,161 - -0.6
543,161 - -0.3
543,161 - -0.5
543,295 + MPMX19_05815 0.23 -2.2
543,295 + MPMX19_05815 0.23 +0.2
543,295 + MPMX19_05815 0.23 +0.5
543,295 + MPMX19_05815 0.23 -0.4
543,295 + MPMX19_05815 0.23 -1.5
543,295 + MPMX19_05815 0.23 -1.8
543,295 + MPMX19_05815 0.23 +0.5
543,295 + MPMX19_05815 0.23 -1.3
543,295 + MPMX19_05815 0.23 +0.3
543,295 + MPMX19_05815 0.23 -0.6
543,295 + MPMX19_05815 0.23 -0.3
543,295 + MPMX19_05815 0.23 -0.5
543,295 + MPMX19_05815 0.23 +0.7
543,295 + MPMX19_05815 0.23 -0.7
543,295 + MPMX19_05815 0.23 +0.4
543,296 - MPMX19_05815 0.24 -0.0
543,296 - MPMX19_05815 0.24 -0.1
543,296 - MPMX19_05815 0.24 +1.7
543,296 - MPMX19_05815 0.24 -0.5
543,296 - MPMX19_05815 0.24 -0.1
543,296 - MPMX19_05815 0.24 -1.2
543,296 - MPMX19_05815 0.24 -1.4
543,296 - MPMX19_05815 0.24 -1.3
543,296 - MPMX19_05815 0.24 +1.0
543,394 + MPMX19_05815 0.36 -0.8
543,394 + MPMX19_05815 0.36 +0.9
543,394 + MPMX19_05815 0.36 +0.5
543,395 - MPMX19_05815 0.36 -1.3
543,395 - MPMX19_05815 0.36 +0.4
543,395 - MPMX19_05815 0.36 +1.0
543,395 - MPMX19_05815 0.36 +0.2
543,532 + MPMX19_05815 0.54 +1.1
543,532 + MPMX19_05815 0.54 -0.1
543,532 + MPMX19_05815 0.54 -1.1
543,533 - MPMX19_05815 0.54 +0.4
543,533 - MPMX19_05815 0.54 -0.7
543,533 - MPMX19_05815 0.54 -0.5
543,571 + MPMX19_05815 0.59 +1.3
543,571 + MPMX19_05815 0.59 +1.5
543,571 + MPMX19_05815 0.59 +0.2
543,571 + MPMX19_05815 0.59 +1.2
543,571 + MPMX19_05815 0.59 +0.3
543,571 + MPMX19_05815 0.59 +2.2
543,571 + MPMX19_05815 0.59 -2.2
543,571 + MPMX19_05815 0.59 -0.8
543,571 + MPMX19_05815 0.59 -0.2
543,571 + MPMX19_05815 0.59 -1.0
543,571 + MPMX19_05815 0.59 -0.3
543,571 + MPMX19_05815 0.59 -1.7
543,571 + MPMX19_05815 0.59 +0.1
543,572 - MPMX19_05815 0.59 -1.3
543,572 - MPMX19_05815 0.59 +0.2
543,572 - MPMX19_05815 0.59 -1.7
543,572 - MPMX19_05815 0.59 +1.2
543,572 - MPMX19_05815 0.59 +1.1
543,572 - MPMX19_05815 0.59 -0.3
543,572 - MPMX19_05815 0.59 +0.6
543,572 - MPMX19_05815 0.59 -0.8
543,572 - MPMX19_05815 0.59 +0.0
543,911 + +0.3
543,911 + -0.1
543,911 + -1.2
543,911 + -0.3
543,911 + +1.3
543,911 + -1.4
543,912 - +0.3
543,912 - +1.2
543,924 + -0.8
543,924 + -0.1
543,924 + -0.3
543,925 - -1.2
543,925 - -1.8
543,925 - -1.4
543,925 - -2.6
543,925 - -0.1
543,925 - -0.7
543,925 - -2.6
543,925 - -0.7
544,196 + MPMX19_05816 0.37 -0.3
544,196 + MPMX19_05816 0.37 +0.3
544,196 + MPMX19_05816 0.37 +0.5
544,196 + MPMX19_05816 0.37 +0.9
544,197 - MPMX19_05816 0.37 -1.7
544,197 - MPMX19_05816 0.37 -1.7
544,197 - MPMX19_05816 0.37 -0.6
544,197 - MPMX19_05816 0.37 +0.2
544,197 - MPMX19_05816 0.37 +0.8
544,197 - MPMX19_05816 0.37 -0.5
544,197 - MPMX19_05816 0.37 +0.7
544,198 + MPMX19_05816 0.37 -0.4
544,198 + MPMX19_05816 0.37 +0.2
544,198 + MPMX19_05816 0.37 +0.6
544,198 + MPMX19_05816 0.37 -0.4
544,198 + MPMX19_05816 0.37 -1.2
544,198 + MPMX19_05816 0.37 -1.9
544,198 + MPMX19_05816 0.37 +1.7
544,198 + MPMX19_05816 0.37 +1.2
544,198 + MPMX19_05816 0.37 -1.7
544,198 + MPMX19_05816 0.37 -1.4
544,199 - MPMX19_05816 0.37 -0.5
544,199 - MPMX19_05816 0.37 -1.8
544,199 - MPMX19_05816 0.37 -1.4
544,199 - MPMX19_05816 0.37 +0.2
544,199 - MPMX19_05816 0.37 +0.0
544,199 - MPMX19_05816 0.37 -1.6
544,199 - MPMX19_05816 0.37 -1.1
544,199 - MPMX19_05816 0.37 +0.0
544,199 - MPMX19_05816 0.37 -1.4
544,199 - MPMX19_05816 0.37 -0.3
544,625 + -2.3
544,625 + +0.9
544,625 + -0.8

Or see this region's nucleotide sequence