Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05772

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05770 and MPMX19_05771 are separated by 26 nucleotidesMPMX19_05771 and MPMX19_05772 overlap by 1 nucleotidesMPMX19_05772 and MPMX19_05773 are separated by 7 nucleotidesMPMX19_05773 and MPMX19_05774 are separated by 47 nucleotides MPMX19_05770: MPMX19_05770 - 1,2-phenylacetyl-CoA epoxidase, subunit A, at 493,506 to 494,519 _05770 MPMX19_05771: MPMX19_05771 - 1,2-phenylacetyl-CoA epoxidase, subunit B, at 494,546 to 494,833 _05771 MPMX19_05772: MPMX19_05772 - 1,2-phenylacetyl-CoA epoxidase, subunit C, at 494,833 to 495,597 _05772 MPMX19_05773: MPMX19_05773 - Putative 1,2-phenylacetyl-CoA epoxidase, subunit D, at 495,605 to 496,126 _05773 MPMX19_05774: MPMX19_05774 - 1,2-phenylacetyl-CoA epoxidase, subunit E, at 496,174 to 497,253 _05774 Position (kb) 494 495 496Strain fitness (log2 ratio) -2 -1 0 1 2 3at 493.890 kb on + strand, within MPMX19_05770at 493.890 kb on + strand, within MPMX19_05770at 493.890 kb on + strand, within MPMX19_05770at 493.891 kb on - strand, within MPMX19_05770at 493.908 kb on + strand, within MPMX19_05770at 493.908 kb on + strand, within MPMX19_05770at 493.908 kb on + strand, within MPMX19_05770at 493.909 kb on - strand, within MPMX19_05770at 494.001 kb on + strand, within MPMX19_05770at 494.001 kb on + strand, within MPMX19_05770at 494.001 kb on + strand, within MPMX19_05770at 494.001 kb on + strand, within MPMX19_05770at 494.001 kb on + strand, within MPMX19_05770at 494.001 kb on + strand, within MPMX19_05770at 494.002 kb on - strand, within MPMX19_05770at 494.010 kb on + strand, within MPMX19_05770at 494.010 kb on + strand, within MPMX19_05770at 494.010 kb on + strand, within MPMX19_05770at 494.010 kb on + strand, within MPMX19_05770at 494.010 kb on + strand, within MPMX19_05770at 494.010 kb on + strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.067 kb on + strand, within MPMX19_05770at 494.067 kb on + strand, within MPMX19_05770at 494.067 kb on + strand, within MPMX19_05770at 494.068 kb on - strand, within MPMX19_05770at 494.340 kb on + strand, within MPMX19_05770at 494.341 kb on - strand, within MPMX19_05770at 494.341 kb on - strand, within MPMX19_05770at 494.341 kb on - strand, within MPMX19_05770at 494.341 kb on - strand, within MPMX19_05770at 494.545 kb on + strandat 494.545 kb on + strandat 494.545 kb on + strandat 494.554 kb on + strandat 494.554 kb on + strandat 494.555 kb on - strandat 494.555 kb on - strandat 494.672 kb on + strand, within MPMX19_05771at 494.672 kb on + strand, within MPMX19_05771at 494.672 kb on + strand, within MPMX19_05771at 494.672 kb on + strand, within MPMX19_05771at 494.672 kb on + strand, within MPMX19_05771at 494.672 kb on + strand, within MPMX19_05771at 494.672 kb on + strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.674 kb on + strand, within MPMX19_05771at 494.675 kb on - strand, within MPMX19_05771at 494.783 kb on + strand, within MPMX19_05771at 494.784 kb on - strand, within MPMX19_05771at 494.784 kb on - strand, within MPMX19_05771at 494.784 kb on - strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.802 kb on - strand, within MPMX19_05771at 494.802 kb on - strand, within MPMX19_05771at 494.802 kb on - strand, within MPMX19_05771at 494.802 kb on - strand, within MPMX19_05771at 494.802 kb on - strand, within MPMX19_05771at 494.802 kb on - strand, within MPMX19_05771at 494.827 kb on + strandat 494.827 kb on + strandat 494.827 kb on + strandat 494.827 kb on + strandat 494.827 kb on + strandat 494.827 kb on + strandat 494.828 kb on - strandat 494.828 kb on - strandat 494.828 kb on - strandat 494.828 kb on - strandat 494.828 kb on - strandat 494.866 kb on + strandat 494.867 kb on - strandat 495.010 kb on + strand, within MPMX19_05772at 495.010 kb on + strand, within MPMX19_05772at 495.010 kb on + strand, within MPMX19_05772at 495.010 kb on + strand, within MPMX19_05772at 495.010 kb on + strand, within MPMX19_05772at 495.010 kb on + strand, within MPMX19_05772at 495.011 kb on - strand, within MPMX19_05772at 495.011 kb on - strand, within MPMX19_05772at 495.011 kb on - strand, within MPMX19_05772at 495.011 kb on - strand, within MPMX19_05772at 495.011 kb on - strand, within MPMX19_05772at 495.172 kb on + strand, within MPMX19_05772at 495.172 kb on + strand, within MPMX19_05772at 495.172 kb on + strand, within MPMX19_05772at 495.172 kb on + strand, within MPMX19_05772at 495.173 kb on - strand, within MPMX19_05772at 495.173 kb on - strand, within MPMX19_05772at 495.244 kb on + strand, within MPMX19_05772at 495.244 kb on + strand, within MPMX19_05772at 495.244 kb on + strand, within MPMX19_05772at 495.245 kb on - strand, within MPMX19_05772at 495.245 kb on - strand, within MPMX19_05772at 495.245 kb on - strand, within MPMX19_05772at 495.343 kb on + strand, within MPMX19_05772at 495.343 kb on + strand, within MPMX19_05772at 495.344 kb on - strand, within MPMX19_05772at 495.344 kb on - strand, within MPMX19_05772at 495.541 kb on + strandat 495.541 kb on + strandat 495.541 kb on + strandat 495.542 kb on - strandat 495.542 kb on - strandat 495.578 kb on - strandat 495.791 kb on + strand, within MPMX19_05773at 495.791 kb on + strand, within MPMX19_05773at 495.791 kb on + strand, within MPMX19_05773at 495.791 kb on + strand, within MPMX19_05773at 495.791 kb on + strand, within MPMX19_05773at 495.791 kb on + strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 495.792 kb on - strand, within MPMX19_05773at 496.082 kb on + strandat 496.159 kb on - strandat 496.159 kb on - strandat 496.300 kb on + strand, within MPMX19_05774at 496.300 kb on + strand, within MPMX19_05774at 496.300 kb on + strand, within MPMX19_05774at 496.300 kb on + strand, within MPMX19_05774at 496.300 kb on + strand, within MPMX19_05774at 496.300 kb on + strand, within MPMX19_05774at 496.300 kb on + strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.301 kb on - strand, within MPMX19_05774at 496.348 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.489 kb on + strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.490 kb on - strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.522 kb on + strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774at 496.523 kb on - strand, within MPMX19_05774

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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493,890 + MPMX19_05770 0.38 -2.3
493,890 + MPMX19_05770 0.38 -0.3
493,890 + MPMX19_05770 0.38 +0.0
493,891 - MPMX19_05770 0.38 +0.3
493,908 + MPMX19_05770 0.40 -0.6
493,908 + MPMX19_05770 0.40 -1.4
493,908 + MPMX19_05770 0.40 +0.7
493,909 - MPMX19_05770 0.40 -2.2
494,001 + MPMX19_05770 0.49 -0.5
494,001 + MPMX19_05770 0.49 -0.7
494,001 + MPMX19_05770 0.49 +0.3
494,001 + MPMX19_05770 0.49 +0.6
494,001 + MPMX19_05770 0.49 -0.6
494,001 + MPMX19_05770 0.49 -1.1
494,002 - MPMX19_05770 0.49 +0.4
494,010 + MPMX19_05770 0.50 +0.0
494,010 + MPMX19_05770 0.50 -1.1
494,010 + MPMX19_05770 0.50 +0.2
494,010 + MPMX19_05770 0.50 -0.8
494,010 + MPMX19_05770 0.50 -0.4
494,010 + MPMX19_05770 0.50 -1.1
494,011 - MPMX19_05770 0.50 +1.7
494,011 - MPMX19_05770 0.50 -0.1
494,011 - MPMX19_05770 0.50 -0.1
494,011 - MPMX19_05770 0.50 -2.2
494,011 - MPMX19_05770 0.50 -0.8
494,011 - MPMX19_05770 0.50 +0.4
494,011 - MPMX19_05770 0.50 -0.1
494,011 - MPMX19_05770 0.50 -1.5
494,011 - MPMX19_05770 0.50 -0.3
494,067 + MPMX19_05770 0.55 -0.7
494,067 + MPMX19_05770 0.55 -0.3
494,067 + MPMX19_05770 0.55 -0.7
494,068 - MPMX19_05770 0.55 -0.8
494,340 + MPMX19_05770 0.82 +0.4
494,341 - MPMX19_05770 0.82 +0.3
494,341 - MPMX19_05770 0.82 +0.6
494,341 - MPMX19_05770 0.82 +0.2
494,341 - MPMX19_05770 0.82 -0.6
494,545 + -1.1
494,545 + +2.6
494,545 + -1.2
494,554 + -0.1
494,554 + +0.8
494,555 - -0.7
494,555 - +0.5
494,672 + MPMX19_05771 0.44 -1.3
494,672 + MPMX19_05771 0.44 -1.4
494,672 + MPMX19_05771 0.44 -0.5
494,672 + MPMX19_05771 0.44 -2.2
494,672 + MPMX19_05771 0.44 -1.1
494,672 + MPMX19_05771 0.44 +0.2
494,672 + MPMX19_05771 0.44 -0.8
494,673 - MPMX19_05771 0.44 +0.9
494,673 - MPMX19_05771 0.44 -1.3
494,673 - MPMX19_05771 0.44 -0.8
494,673 - MPMX19_05771 0.44 -0.1
494,673 - MPMX19_05771 0.44 +0.0
494,673 - MPMX19_05771 0.44 -1.4
494,673 - MPMX19_05771 0.44 +0.5
494,673 - MPMX19_05771 0.44 +0.3
494,673 - MPMX19_05771 0.44 +1.0
494,673 - MPMX19_05771 0.44 -1.7
494,674 + MPMX19_05771 0.44 -0.6
494,675 - MPMX19_05771 0.45 -1.7
494,783 + MPMX19_05771 0.82 +0.1
494,784 - MPMX19_05771 0.83 +0.2
494,784 - MPMX19_05771 0.83 +0.2
494,784 - MPMX19_05771 0.83 -1.4
494,801 + MPMX19_05771 0.89 +3.0
494,801 + MPMX19_05771 0.89 -0.7
494,801 + MPMX19_05771 0.89 -2.1
494,801 + MPMX19_05771 0.89 -0.5
494,801 + MPMX19_05771 0.89 -0.5
494,801 + MPMX19_05771 0.89 -0.3
494,801 + MPMX19_05771 0.89 -0.3
494,801 + MPMX19_05771 0.89 +0.6
494,801 + MPMX19_05771 0.89 +0.7
494,801 + MPMX19_05771 0.89 -0.1
494,801 + MPMX19_05771 0.89 -1.3
494,801 + MPMX19_05771 0.89 -2.1
494,801 + MPMX19_05771 0.89 -0.7
494,801 + MPMX19_05771 0.89 -0.8
494,801 + MPMX19_05771 0.89 -2.1
494,802 - MPMX19_05771 0.89 +0.2
494,802 - MPMX19_05771 0.89 +0.2
494,802 - MPMX19_05771 0.89 +0.0
494,802 - MPMX19_05771 0.89 +1.7
494,802 - MPMX19_05771 0.89 -0.8
494,802 - MPMX19_05771 0.89 -1.1
494,827 + +1.0
494,827 + -2.6
494,827 + +0.7
494,827 + +0.3
494,827 + -0.3
494,827 + +0.8
494,828 - +0.3
494,828 - +0.1
494,828 - -0.6
494,828 - -0.3
494,828 - +0.3
494,866 + -0.8
494,867 - +0.2
495,010 + MPMX19_05772 0.23 -0.1
495,010 + MPMX19_05772 0.23 -0.7
495,010 + MPMX19_05772 0.23 -0.1
495,010 + MPMX19_05772 0.23 -0.9
495,010 + MPMX19_05772 0.23 -0.1
495,010 + MPMX19_05772 0.23 -0.6
495,011 - MPMX19_05772 0.23 -2.0
495,011 - MPMX19_05772 0.23 +1.7
495,011 - MPMX19_05772 0.23 -1.5
495,011 - MPMX19_05772 0.23 +0.2
495,011 - MPMX19_05772 0.23 -0.5
495,172 + MPMX19_05772 0.44 -1.1
495,172 + MPMX19_05772 0.44 -0.6
495,172 + MPMX19_05772 0.44 -0.8
495,172 + MPMX19_05772 0.44 +0.5
495,173 - MPMX19_05772 0.44 -0.2
495,173 - MPMX19_05772 0.44 -1.1
495,244 + MPMX19_05772 0.54 -1.2
495,244 + MPMX19_05772 0.54 -0.6
495,244 + MPMX19_05772 0.54 -2.0
495,245 - MPMX19_05772 0.54 -1.8
495,245 - MPMX19_05772 0.54 -2.2
495,245 - MPMX19_05772 0.54 -0.5
495,343 + MPMX19_05772 0.67 +0.0
495,343 + MPMX19_05772 0.67 -1.4
495,344 - MPMX19_05772 0.67 +0.2
495,344 - MPMX19_05772 0.67 +0.2
495,541 + -0.8
495,541 + -0.8
495,541 + -0.1
495,542 - -0.3
495,542 - +0.6
495,578 - -0.7
495,791 + MPMX19_05773 0.36 +0.7
495,791 + MPMX19_05773 0.36 +0.5
495,791 + MPMX19_05773 0.36 -0.8
495,791 + MPMX19_05773 0.36 -0.0
495,791 + MPMX19_05773 0.36 -1.2
495,791 + MPMX19_05773 0.36 -0.1
495,792 - MPMX19_05773 0.36 +1.4
495,792 - MPMX19_05773 0.36 +0.7
495,792 - MPMX19_05773 0.36 +0.7
495,792 - MPMX19_05773 0.36 -1.7
495,792 - MPMX19_05773 0.36 -1.0
495,792 - MPMX19_05773 0.36 -2.1
495,792 - MPMX19_05773 0.36 -0.1
496,082 + -0.7
496,159 - -1.2
496,159 - -0.6
496,300 + MPMX19_05774 0.12 -0.4
496,300 + MPMX19_05774 0.12 +0.2
496,300 + MPMX19_05774 0.12 +0.3
496,300 + MPMX19_05774 0.12 +0.4
496,300 + MPMX19_05774 0.12 +1.5
496,300 + MPMX19_05774 0.12 -0.6
496,300 + MPMX19_05774 0.12 -0.4
496,301 - MPMX19_05774 0.12 +0.4
496,301 - MPMX19_05774 0.12 -0.4
496,301 - MPMX19_05774 0.12 -0.7
496,301 - MPMX19_05774 0.12 -0.8
496,301 - MPMX19_05774 0.12 +0.9
496,301 - MPMX19_05774 0.12 -0.1
496,301 - MPMX19_05774 0.12 -0.1
496,301 - MPMX19_05774 0.12 -0.7
496,301 - MPMX19_05774 0.12 +0.5
496,348 + MPMX19_05774 0.16 -0.5
496,489 + MPMX19_05774 0.29 -0.8
496,489 + MPMX19_05774 0.29 -0.3
496,489 + MPMX19_05774 0.29 +0.5
496,489 + MPMX19_05774 0.29 +0.3
496,489 + MPMX19_05774 0.29 +1.2
496,489 + MPMX19_05774 0.29 +0.7
496,489 + MPMX19_05774 0.29 +1.0
496,489 + MPMX19_05774 0.29 +0.0
496,489 + MPMX19_05774 0.29 -2.2
496,489 + MPMX19_05774 0.29 +0.2
496,489 + MPMX19_05774 0.29 +0.7
496,489 + MPMX19_05774 0.29 -0.3
496,489 + MPMX19_05774 0.29 -0.4
496,489 + MPMX19_05774 0.29 +2.7
496,489 + MPMX19_05774 0.29 +0.2
496,490 - MPMX19_05774 0.29 -1.0
496,490 - MPMX19_05774 0.29 +0.7
496,490 - MPMX19_05774 0.29 -1.1
496,490 - MPMX19_05774 0.29 -1.0
496,490 - MPMX19_05774 0.29 +0.7
496,490 - MPMX19_05774 0.29 +0.9
496,490 - MPMX19_05774 0.29 -0.3
496,490 - MPMX19_05774 0.29 -0.9
496,522 + MPMX19_05774 0.32 +2.2
496,522 + MPMX19_05774 0.32 -0.4
496,522 + MPMX19_05774 0.32 +3.3
496,522 + MPMX19_05774 0.32 +0.1
496,522 + MPMX19_05774 0.32 -0.8
496,522 + MPMX19_05774 0.32 -1.6
496,522 + MPMX19_05774 0.32 -0.4
496,522 + MPMX19_05774 0.32 +1.3
496,522 + MPMX19_05774 0.32 +0.5
496,522 + MPMX19_05774 0.32 +1.2
496,522 + MPMX19_05774 0.32 -1.3
496,522 + MPMX19_05774 0.32 +0.3
496,522 + MPMX19_05774 0.32 -1.4
496,522 + MPMX19_05774 0.32 +0.2
496,522 + MPMX19_05774 0.32 -0.6
496,522 + MPMX19_05774 0.32 -0.6
496,522 + MPMX19_05774 0.32 -1.3
496,522 + MPMX19_05774 0.32 -0.5
496,523 - MPMX19_05774 0.32 -0.4
496,523 - MPMX19_05774 0.32 +0.0
496,523 - MPMX19_05774 0.32 -1.1
496,523 - MPMX19_05774 0.32 +1.5
496,523 - MPMX19_05774 0.32 +1.1
496,523 - MPMX19_05774 0.32 +0.3
496,523 - MPMX19_05774 0.32 -0.3
496,523 - MPMX19_05774 0.32 -1.0
496,523 - MPMX19_05774 0.32 -0.8
496,523 - MPMX19_05774 0.32 -1.1
496,523 - MPMX19_05774 0.32 -0.7

Or see this region's nucleotide sequence