Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05768

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05767 and MPMX19_05768 are separated by 101 nucleotidesMPMX19_05768 and MPMX19_05769 are separated by 428 nucleotides MPMX19_05767: MPMX19_05767 - Sensor histidine kinase RcsC, at 489,306 to 491,660 _05767 MPMX19_05768: MPMX19_05768 - hypothetical protein, at 491,762 to 492,007 _05768 MPMX19_05769: MPMX19_05769 - hypothetical protein, at 492,436 to 493,035 _05769 Position (kb) 491 492 493Strain fitness (log2 ratio) -2 -1 0 1at 490.878 kb on + strand, within MPMX19_05767at 490.878 kb on + strand, within MPMX19_05767at 490.878 kb on + strand, within MPMX19_05767at 490.879 kb on - strand, within MPMX19_05767at 490.879 kb on - strand, within MPMX19_05767at 490.879 kb on - strand, within MPMX19_05767at 490.944 kb on + strand, within MPMX19_05767at 490.944 kb on + strand, within MPMX19_05767at 490.944 kb on + strand, within MPMX19_05767at 490.944 kb on + strand, within MPMX19_05767at 490.944 kb on + strand, within MPMX19_05767at 490.944 kb on + strand, within MPMX19_05767at 490.945 kb on - strand, within MPMX19_05767at 490.945 kb on - strand, within MPMX19_05767at 491.001 kb on + strand, within MPMX19_05767at 491.001 kb on + strand, within MPMX19_05767at 491.001 kb on + strand, within MPMX19_05767at 491.001 kb on + strand, within MPMX19_05767at 491.001 kb on + strand, within MPMX19_05767at 491.001 kb on + strand, within MPMX19_05767at 491.001 kb on + strand, within MPMX19_05767at 491.001 kb on + strand, within MPMX19_05767at 491.001 kb on + strand, within MPMX19_05767at 491.001 kb on + strand, within MPMX19_05767at 491.001 kb on + strand, within MPMX19_05767at 491.002 kb on - strand, within MPMX19_05767at 491.002 kb on - strand, within MPMX19_05767at 491.002 kb on - strand, within MPMX19_05767at 491.002 kb on - strand, within MPMX19_05767at 491.002 kb on - strand, within MPMX19_05767at 491.002 kb on - strand, within MPMX19_05767at 491.002 kb on - strand, within MPMX19_05767at 491.602 kb on + strandat 491.813 kb on + strand, within MPMX19_05768at 491.813 kb on + strand, within MPMX19_05768at 491.813 kb on + strand, within MPMX19_05768at 491.813 kb on + strand, within MPMX19_05768at 491.813 kb on + strand, within MPMX19_05768at 491.814 kb on - strand, within MPMX19_05768at 491.814 kb on - strand, within MPMX19_05768at 491.920 kb on + strand, within MPMX19_05768at 491.920 kb on + strand, within MPMX19_05768at 491.921 kb on - strand, within MPMX19_05768at 491.921 kb on - strand, within MPMX19_05768at 491.921 kb on - strand, within MPMX19_05768at 492.057 kb on - strandat 492.071 kb on - strandat 492.120 kb on + strandat 492.120 kb on + strandat 492.121 kb on - strandat 492.121 kb on - strandat 492.133 kb on - strandat 492.137 kb on + strandat 492.137 kb on + strandat 492.137 kb on + strandat 492.137 kb on + strandat 492.137 kb on + strandat 492.137 kb on + strandat 492.137 kb on + strandat 492.137 kb on + strandat 492.138 kb on - strandat 492.138 kb on - strandat 492.138 kb on - strandat 492.138 kb on - strandat 492.138 kb on - strandat 492.138 kb on - strandat 492.138 kb on - strandat 492.138 kb on - strandat 492.138 kb on - strandat 492.138 kb on - strandat 492.167 kb on - strandat 492.225 kb on + strandat 492.226 kb on - strandat 492.226 kb on - strandat 492.228 kb on + strandat 492.228 kb on + strandat 492.229 kb on - strandat 492.303 kb on + strandat 492.304 kb on - strandat 492.316 kb on + strandat 492.317 kb on - strandat 492.317 kb on - strandat 492.317 kb on - strandat 492.317 kb on - strandat 492.346 kb on + strandat 492.346 kb on + strandat 492.347 kb on - strandat 492.347 kb on - strandat 492.351 kb on + strandat 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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490,878 + MPMX19_05767 0.67 +0.7
490,878 + MPMX19_05767 0.67 -1.8
490,878 + MPMX19_05767 0.67 +0.3
490,879 - MPMX19_05767 0.67 -0.3
490,879 - MPMX19_05767 0.67 -0.0
490,879 - MPMX19_05767 0.67 -0.8
490,944 + MPMX19_05767 0.70 -0.6
490,944 + MPMX19_05767 0.70 -1.3
490,944 + MPMX19_05767 0.70 +0.2
490,944 + MPMX19_05767 0.70 -1.8
490,944 + MPMX19_05767 0.70 -0.2
490,944 + MPMX19_05767 0.70 +1.0
490,945 - MPMX19_05767 0.70 +0.0
490,945 - MPMX19_05767 0.70 -1.7
491,001 + MPMX19_05767 0.72 -1.2
491,001 + MPMX19_05767 0.72 -0.8
491,001 + MPMX19_05767 0.72 -0.8
491,001 + MPMX19_05767 0.72 +0.4
491,001 + MPMX19_05767 0.72 +0.5
491,001 + MPMX19_05767 0.72 -0.2
491,001 + MPMX19_05767 0.72 -2.3
491,001 + MPMX19_05767 0.72 -0.6
491,001 + MPMX19_05767 0.72 -1.1
491,001 + MPMX19_05767 0.72 -0.1
491,001 + MPMX19_05767 0.72 +0.4
491,002 - MPMX19_05767 0.72 -0.5
491,002 - MPMX19_05767 0.72 -0.3
491,002 - MPMX19_05767 0.72 -1.8
491,002 - MPMX19_05767 0.72 -2.1
491,002 - MPMX19_05767 0.72 +1.4
491,002 - MPMX19_05767 0.72 -0.7
491,002 - MPMX19_05767 0.72 -0.7
491,602 + -0.7
491,813 + MPMX19_05768 0.21 -0.1
491,813 + MPMX19_05768 0.21 -0.8
491,813 + MPMX19_05768 0.21 -0.4
491,813 + MPMX19_05768 0.21 -0.2
491,813 + MPMX19_05768 0.21 -1.7
491,814 - MPMX19_05768 0.21 -1.8
491,814 - MPMX19_05768 0.21 -0.1
491,920 + MPMX19_05768 0.64 -1.2
491,920 + MPMX19_05768 0.64 -0.3
491,921 - MPMX19_05768 0.65 -0.6
491,921 - MPMX19_05768 0.65 -0.4
491,921 - MPMX19_05768 0.65 -0.1
492,057 - -1.3
492,071 - -0.2
492,120 + +1.1
492,120 + -0.6
492,121 - +1.0
492,121 - +0.5
492,133 - +0.8
492,137 + -0.1
492,137 + -0.3
492,137 + +0.9
492,137 + +0.9
492,137 + -0.3
492,137 + -0.6
492,137 + -0.3
492,137 + -0.6
492,138 - +1.0
492,138 - -0.7
492,138 - -0.3
492,138 - -0.8
492,138 - +0.2
492,138 - -0.2
492,138 - -2.4
492,138 - -0.2
492,138 - +1.2
492,138 - -1.2
492,167 - -0.5
492,225 + -0.2
492,226 - -0.6
492,226 - -1.3
492,228 + +0.7
492,228 + -1.2
492,229 - +0.2
492,303 + +0.2
492,304 - -0.1
492,316 + +1.7
492,317 - -0.3
492,317 - -2.3
492,317 - -0.7
492,317 - -0.5
492,346 + -1.8
492,346 + -1.2
492,347 - -0.8
492,347 - +0.2
492,351 + -0.8
492,529 + MPMX19_05769 0.15 +0.1
492,529 + MPMX19_05769 0.15 -0.6
492,529 + MPMX19_05769 0.15 +0.7
492,529 + MPMX19_05769 0.15 +0.2
492,529 + MPMX19_05769 0.15 -0.2
492,529 + MPMX19_05769 0.15 -0.0
492,529 + MPMX19_05769 0.15 -0.3
492,529 + MPMX19_05769 0.15 -0.3
492,529 + MPMX19_05769 0.15 -1.4
492,529 + MPMX19_05769 0.15 +1.5
492,529 + MPMX19_05769 0.15 -0.4
492,529 + MPMX19_05769 0.15 -0.6
492,530 - MPMX19_05769 0.16 -2.0
492,530 - MPMX19_05769 0.16 +0.2
492,530 - MPMX19_05769 0.16 -1.7
492,530 - MPMX19_05769 0.16 -1.3
492,530 - MPMX19_05769 0.16 -1.3
492,530 - MPMX19_05769 0.16 -1.0
492,530 - MPMX19_05769 0.16 +0.2
492,530 - MPMX19_05769 0.16 -2.1
492,530 - MPMX19_05769 0.16 -0.5
492,530 - MPMX19_05769 0.16 -2.7
492,530 - MPMX19_05769 0.16 +0.7
492,530 - MPMX19_05769 0.16 -0.3
492,973 + MPMX19_05769 0.90 +0.6
492,973 + MPMX19_05769 0.90 -0.7
492,973 + MPMX19_05769 0.90 -0.8
492,973 + MPMX19_05769 0.90 -0.6
492,973 + MPMX19_05769 0.90 +0.3
492,973 + MPMX19_05769 0.90 -0.6
492,973 + MPMX19_05769 0.90 +1.2
492,973 + MPMX19_05769 0.90 -0.2
492,973 + MPMX19_05769 0.90 -0.6
492,973 + MPMX19_05769 0.90 +0.2
492,973 + MPMX19_05769 0.90 -2.1
492,973 + MPMX19_05769 0.90 +0.4
492,973 + MPMX19_05769 0.90 -2.2
492,973 + MPMX19_05769 0.90 +1.1
492,973 + MPMX19_05769 0.90 -1.0
492,973 + MPMX19_05769 0.90 +0.0
492,973 + MPMX19_05769 0.90 +0.4
492,974 - MPMX19_05769 0.90 -0.6
492,974 - MPMX19_05769 0.90 -0.1
492,974 - MPMX19_05769 0.90 +0.4
492,974 - MPMX19_05769 0.90 +0.3
492,974 - MPMX19_05769 0.90 -1.1
492,974 - MPMX19_05769 0.90 -1.1
492,974 - MPMX19_05769 0.90 -0.1
492,974 - MPMX19_05769 0.90 -1.2
492,974 - MPMX19_05769 0.90 -1.6
492,974 - MPMX19_05769 0.90 -0.7
492,974 - MPMX19_05769 0.90 -0.1
492,974 - MPMX19_05769 0.90 -1.0
492,974 - MPMX19_05769 0.90 +0.1

Or see this region's nucleotide sequence