Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05746 and MPMX19_05747 are separated by 147 nucleotides MPMX19_05747 and MPMX19_05748 are separated by 315 nucleotides MPMX19_05748 and MPMX19_05749 overlap by 4 nucleotides
MPMX19_05746: MPMX19_05746 - hypothetical protein, at 466,052 to 467,893
_05746
MPMX19_05747: MPMX19_05747 - Transcriptional regulatory protein DegU, at 468,041 to 468,763
_05747
MPMX19_05748: MPMX19_05748 - Response regulator SaeR, at 469,079 to 469,543
_05748
MPMX19_05749: MPMX19_05749 - Cyclic di-GMP phosphodiesterase response regulator RpfG, at 469,540 to 470,607
_05749
Position (kb) 468
469 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 467.292 kb on + strand, within MPMX19_05746 at 467.292 kb on + strand, within MPMX19_05746 at 467.292 kb on + strand, within MPMX19_05746 at 467.292 kb on + strand, within MPMX19_05746 at 467.293 kb on - strand, within MPMX19_05746 at 467.293 kb on - strand, within MPMX19_05746 at 467.293 kb on - strand, within MPMX19_05746 at 467.293 kb on - strand, within MPMX19_05746 at 467.293 kb on - strand, within MPMX19_05746 at 467.343 kb on + strand, within MPMX19_05746 at 467.343 kb on + strand, within MPMX19_05746 at 467.343 kb on + strand, within MPMX19_05746 at 467.344 kb on - strand, within MPMX19_05746 at 467.344 kb on - strand, within MPMX19_05746 at 467.344 kb on - strand, within MPMX19_05746 at 467.344 kb on - strand, within MPMX19_05746 at 467.344 kb on - strand, within MPMX19_05746 at 467.807 kb on + strand at 467.808 kb on - strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.883 kb on + strand at 467.906 kb on + strand at 467.913 kb on + strand at 467.913 kb on + strand at 467.914 kb on - strand at 467.966 kb on + strand at 467.966 kb on + strand at 467.966 kb on + strand at 467.967 kb on - strand at 467.967 kb on - strand at 468.004 kb on + strand at 468.004 kb on + strand at 468.004 kb on + strand at 468.004 kb on + strand at 468.005 kb on - strand at 468.005 kb on - strand at 468.601 kb on - strand, within MPMX19_05747 at 468.646 kb on + strand, within MPMX19_05747 at 468.647 kb on - strand, within MPMX19_05747 at 468.802 kb on + strand at 468.802 kb on + strand at 468.802 kb on + strand at 468.803 kb on - strand at 468.803 kb on - strand at 468.803 kb on - strand at 468.803 kb on - strand at 468.805 kb on + strand at 468.805 kb on + strand at 468.806 kb on - strand at 468.806 kb on - strand at 468.821 kb on + strand at 468.821 kb on + strand at 468.821 kb on + strand at 468.821 kb on + strand at 468.822 kb on - strand at 468.822 kb on - strand at 468.822 kb on - strand at 468.822 kb on - strand at 468.823 kb on + strand at 468.823 kb on + strand at 468.823 kb on + strand at 468.824 kb on - strand at 468.824 kb on - strand at 468.824 kb on - strand at 468.857 kb on + strand at 468.858 kb on - strand at 468.875 kb on + strand at 468.875 kb on + strand at 468.875 kb on + strand at 468.875 kb on + strand at 468.876 kb on - strand at 468.876 kb on - strand at 468.876 kb on - strand at 468.876 kb on - strand at 468.876 kb on - strand at 468.892 kb on + strand at 468.892 kb on + strand at 468.892 kb on + strand at 468.892 kb on + strand at 468.893 kb on - strand at 468.893 kb on - strand at 468.893 kb on - strand at 468.893 kb on - strand at 468.937 kb on + strand at 468.937 kb on + strand at 468.937 kb on + strand at 468.940 kb on + strand at 468.941 kb on - strand at 468.941 kb on - strand at 468.941 kb on - strand at 468.941 kb on - strand at 468.941 kb on - strand at 468.942 kb on - strand at 469.008 kb on + strand at 469.008 kb on + strand at 469.021 kb on - strand at 469.214 kb on + strand, within MPMX19_05748 at 469.214 kb on + strand, within MPMX19_05748 at 469.214 kb on + strand, within MPMX19_05748 at 469.215 kb on - strand, within MPMX19_05748 at 469.215 kb on - strand, within MPMX19_05748 at 469.215 kb on - strand, within MPMX19_05748 at 469.319 kb on + strand, within MPMX19_05748 at 469.536 kb on + strand at 469.536 kb on + strand at 469.536 kb on + strand at 469.536 kb on + strand at 469.536 kb on + strand at 469.536 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 467,292 + MPMX19_05746 0.67 -1.6 467,292 + MPMX19_05746 0.67 +0.6 467,292 + MPMX19_05746 0.67 -0.3 467,292 + MPMX19_05746 0.67 +0.0 467,293 - MPMX19_05746 0.67 -1.6 467,293 - MPMX19_05746 0.67 +1.1 467,293 - MPMX19_05746 0.67 -0.4 467,293 - MPMX19_05746 0.67 -1.0 467,293 - MPMX19_05746 0.67 +0.3 467,343 + MPMX19_05746 0.70 -2.5 467,343 + MPMX19_05746 0.70 -1.8 467,343 + MPMX19_05746 0.70 -0.5 467,344 - MPMX19_05746 0.70 +0.2 467,344 - MPMX19_05746 0.70 +0.6 467,344 - MPMX19_05746 0.70 -0.3 467,344 - MPMX19_05746 0.70 -0.1 467,344 - MPMX19_05746 0.70 -0.5 467,807 + -0.8 467,808 - -1.2 467,848 + -1.0 467,848 + +0.1 467,848 + -0.4 467,848 + -0.8 467,848 + -0.7 467,848 + +0.7 467,848 + +0.3 467,848 + -1.3 467,848 + -1.6 467,848 + -0.6 467,848 + -0.4 467,848 + +0.0 467,848 + +0.0 467,848 + +0.3 467,849 - +0.1 467,849 - -0.5 467,849 - -1.1 467,849 - -0.3 467,849 - -0.0 467,849 - -1.3 467,849 - +1.2 467,849 - -0.7 467,849 - -0.8 467,849 - +1.5 467,849 - -2.0 467,849 - +0.2 467,849 - +0.0 467,849 - -0.4 467,849 - -0.2 467,883 + +0.2 467,906 + -0.1 467,913 + -1.7 467,913 + +0.5 467,914 - +1.5 467,966 + +0.7 467,966 + -0.6 467,966 + +1.4 467,967 - -1.6 467,967 - -0.1 468,004 + +0.0 468,004 + -1.4 468,004 + -0.8 468,004 + +1.3 468,005 - -0.8 468,005 - -0.1 468,601 - MPMX19_05747 0.77 +0.3 468,646 + MPMX19_05747 0.84 -1.0 468,647 - MPMX19_05747 0.84 -0.3 468,802 + -1.3 468,802 + +0.4 468,802 + +0.2 468,803 - -0.8 468,803 - -0.4 468,803 - -0.7 468,803 - +0.2 468,805 + -1.5 468,805 + -1.1 468,806 - +0.9 468,806 - +0.4 468,821 + -3.1 468,821 + -0.7 468,821 + +0.0 468,821 + +0.9 468,822 - -0.7 468,822 - +0.4 468,822 - +0.7 468,822 - +0.2 468,823 + +0.2 468,823 + +2.2 468,823 + -1.9 468,824 - -1.6 468,824 - -1.3 468,824 - +1.3 468,857 + -1.8 468,858 - -0.4 468,875 + -1.0 468,875 + -1.4 468,875 + -0.2 468,875 + -0.7 468,876 - -0.6 468,876 - -2.3 468,876 - +0.5 468,876 - +0.5 468,876 - -0.6 468,892 + +0.4 468,892 + +0.2 468,892 + +1.7 468,892 + -0.5 468,893 - -0.6 468,893 - +0.0 468,893 - -1.3 468,893 - +0.1 468,937 + +0.3 468,937 + -1.8 468,937 + +0.0 468,940 + -0.1 468,941 - -0.3 468,941 - +0.5 468,941 - -0.3 468,941 - -0.1 468,941 - -2.0 468,942 - +0.9 469,008 + -1.2 469,008 + +0.0 469,021 - -1.7 469,214 + MPMX19_05748 0.29 +0.0 469,214 + MPMX19_05748 0.29 -1.4 469,214 + MPMX19_05748 0.29 -0.2 469,215 - MPMX19_05748 0.29 +0.2 469,215 - MPMX19_05748 0.29 +0.2 469,215 - MPMX19_05748 0.29 -0.5 469,319 + MPMX19_05748 0.52 +1.0 469,536 + +0.3 469,536 + +0.2 469,536 + +0.2 469,536 + -0.4 469,536 + +0.5 469,536 + -0.9
Or see this region's nucleotide sequence