Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05627

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05626 and MPMX19_05627 are separated by 407 nucleotidesMPMX19_05627 and MPMX19_05628 are separated by 60 nucleotides MPMX19_05626: MPMX19_05626 - hypothetical protein, at 341,553 to 343,016 _05626 MPMX19_05627: MPMX19_05627 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 343,424 to 344,779 _05627 MPMX19_05628: MPMX19_05628 - dTDP-4-oxo-6-deoxy-D-allose reductase, at 344,840 to 345,835 _05628 Position (kb) 343 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 342.432 kb on + strand, within MPMX19_05626at 342.432 kb on + strand, within MPMX19_05626at 342.432 kb on + strand, within MPMX19_05626at 342.433 kb on - strand, within MPMX19_05626at 342.433 kb on - strand, within MPMX19_05626at 342.433 kb on - strand, within MPMX19_05626at 342.525 kb on + strand, within MPMX19_05626at 342.525 kb on + strand, within MPMX19_05626at 342.526 kb on - strand, within MPMX19_05626at 342.526 kb on - strand, within MPMX19_05626at 342.526 kb on - strand, within MPMX19_05626at 342.526 kb on - strand, within MPMX19_05626at 342.580 kb on - strand, within MPMX19_05626at 342.580 kb on - strand, within MPMX19_05626at 342.580 kb on - strand, within MPMX19_05626at 342.580 kb on - strand, within MPMX19_05626at 342.633 kb on + strand, within MPMX19_05626at 342.633 kb on + strand, within MPMX19_05626at 342.633 kb on + strand, within MPMX19_05626at 342.633 kb on + strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.795 kb on + strand, within MPMX19_05626at 342.795 kb on + strand, within MPMX19_05626at 342.795 kb on + strand, within MPMX19_05626at 342.796 kb on - strand, within MPMX19_05626at 342.796 kb on - strand, within MPMX19_05626at 342.796 kb on - strand, within MPMX19_05626at 342.841 kb on + strand, within MPMX19_05626at 342.943 kb on - strandat 342.943 kb on - strandat 342.943 kb on - strandat 342.943 kb on - strandat 343.106 kb on + strandat 343.171 kb on - strandat 343.173 kb on + strandat 343.174 kb on - strandat 343.179 kb on + strandat 343.182 kb on + strandat 343.183 kb on - strandat 343.265 kb on + strandat 343.265 kb on + strandat 343.265 kb on + strandat 343.266 kb on - strandat 343.266 kb on - strandat 343.266 kb on - strandat 343.266 kb on - strandat 343.374 kb on + strandat 343.374 kb on + strandat 343.374 kb on + strandat 343.374 kb on + strandat 343.374 kb on + strandat 343.374 kb on + strandat 343.374 kb on + strandat 343.375 kb on - strandat 343.375 kb on - strandat 343.375 kb on - strandat 343.375 kb on - strandat 343.375 kb on - strandat 343.450 kb on + strandat 343.450 kb on + strandat 343.451 kb on - strandat 343.451 kb on - strandat 343.475 kb on + strandat 343.475 kb on + strandat 343.476 kb on - strandat 343.476 kb on - strandat 343.476 kb on - strandat 343.476 kb on - strandat 343.690 kb on + strand, within MPMX19_05627at 343.690 kb on + strand, within MPMX19_05627at 343.690 kb on + strand, within MPMX19_05627at 343.691 kb on - strand, within MPMX19_05627at 343.691 kb on - strand, within MPMX19_05627at 344.066 kb on + strand, within MPMX19_05627at 344.066 kb on + strand, within MPMX19_05627at 344.066 kb on + strand, within MPMX19_05627at 344.066 kb on + strand, within MPMX19_05627at 344.066 kb on + strand, within MPMX19_05627at 344.067 kb on - strand, within MPMX19_05627at 344.067 kb on - strand, within MPMX19_05627at 344.067 kb on - strand, within MPMX19_05627at 344.067 kb on - strand, within MPMX19_05627at 344.067 kb on - strand, within MPMX19_05627at 344.067 kb on - strand, within MPMX19_05627at 344.165 kb on + strand, within MPMX19_05627at 344.672 kb on + strandat 344.672 kb on + strandat 344.672 kb on + strandat 344.672 kb on + strandat 344.672 kb on + strandat 344.672 kb on + strandat 344.673 kb on - strandat 344.673 kb on - strandat 344.673 kb on - strandat 344.673 kb on - strandat 344.673 kb on - strandat 344.729 kb on + strandat 344.729 kb on + strandat 344.729 kb on + strandat 344.729 kb on + strandat 344.729 kb on + strandat 344.729 kb on + strandat 344.762 kb on + strandat 344.763 kb on - strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.953 kb on + strand, within MPMX19_05628at 344.953 kb on + strand, within MPMX19_05628at 344.953 kb on + strand, within MPMX19_05628at 345.092 kb on + strand, within MPMX19_05628at 345.093 kb on - strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.207 kb on - strand, within MPMX19_05628at 345.278 kb on + strand, within MPMX19_05628at 345.278 kb on + strand, within MPMX19_05628at 345.278 kb on + strand, within MPMX19_05628at 345.284 kb on + strand, within MPMX19_05628at 345.285 kb on - strand, within MPMX19_05628at 345.285 kb on - strand, within MPMX19_05628at 345.285 kb on - strand, within MPMX19_05628at 345.377 kb on + strand, within MPMX19_05628at 345.377 kb on + strand, within MPMX19_05628at 345.377 kb on + strand, within MPMX19_05628at 345.378 kb on - strand, within MPMX19_05628at 345.378 kb on - strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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342,432 + MPMX19_05626 0.60 +0.8
342,432 + MPMX19_05626 0.60 +1.0
342,432 + MPMX19_05626 0.60 +0.7
342,433 - MPMX19_05626 0.60 -2.1
342,433 - MPMX19_05626 0.60 -2.8
342,433 - MPMX19_05626 0.60 +0.5
342,525 + MPMX19_05626 0.66 -1.0
342,525 + MPMX19_05626 0.66 -0.2
342,526 - MPMX19_05626 0.66 -0.4
342,526 - MPMX19_05626 0.66 -1.4
342,526 - MPMX19_05626 0.66 -1.4
342,526 - MPMX19_05626 0.66 +1.1
342,580 - MPMX19_05626 0.70 +0.4
342,580 - MPMX19_05626 0.70 -1.7
342,580 - MPMX19_05626 0.70 +0.4
342,580 - MPMX19_05626 0.70 +0.3
342,633 + MPMX19_05626 0.74 -0.6
342,633 + MPMX19_05626 0.74 -0.5
342,633 + MPMX19_05626 0.74 +1.1
342,633 + MPMX19_05626 0.74 -1.6
342,634 - MPMX19_05626 0.74 +0.0
342,634 - MPMX19_05626 0.74 +0.5
342,634 - MPMX19_05626 0.74 +0.3
342,634 - MPMX19_05626 0.74 +0.6
342,634 - MPMX19_05626 0.74 -1.0
342,634 - MPMX19_05626 0.74 +0.1
342,634 - MPMX19_05626 0.74 +0.8
342,634 - MPMX19_05626 0.74 -1.0
342,634 - MPMX19_05626 0.74 -1.0
342,634 - MPMX19_05626 0.74 -0.6
342,634 - MPMX19_05626 0.74 -0.2
342,795 + MPMX19_05626 0.85 -0.1
342,795 + MPMX19_05626 0.85 -1.1
342,795 + MPMX19_05626 0.85 -1.2
342,796 - MPMX19_05626 0.85 +0.3
342,796 - MPMX19_05626 0.85 -0.3
342,796 - MPMX19_05626 0.85 +0.4
342,841 + MPMX19_05626 0.88 +1.4
342,943 - +0.8
342,943 - -1.2
342,943 - +0.1
342,943 - -0.5
343,106 + -0.8
343,171 - -1.6
343,173 + -0.8
343,174 - -0.6
343,179 + -2.2
343,182 + -0.0
343,183 - +0.2
343,265 + -1.4
343,265 + -0.4
343,265 + -0.5
343,266 - -1.4
343,266 - -1.6
343,266 - +0.2
343,266 - -0.2
343,374 + -1.9
343,374 + -0.7
343,374 + -1.6
343,374 + +0.3
343,374 + -1.4
343,374 + -1.2
343,374 + +1.8
343,375 - +0.4
343,375 - -0.4
343,375 - +0.1
343,375 - -1.0
343,375 - -1.2
343,450 + +0.0
343,450 + +0.3
343,451 - -0.7
343,451 - -1.6
343,475 + -0.6
343,475 + -0.9
343,476 - +0.8
343,476 - -0.2
343,476 - -1.4
343,476 - -0.3
343,690 + MPMX19_05627 0.20 +1.4
343,690 + MPMX19_05627 0.20 +0.6
343,690 + MPMX19_05627 0.20 -2.0
343,691 - MPMX19_05627 0.20 +0.8
343,691 - MPMX19_05627 0.20 -0.5
344,066 + MPMX19_05627 0.47 -1.2
344,066 + MPMX19_05627 0.47 -1.2
344,066 + MPMX19_05627 0.47 -0.8
344,066 + MPMX19_05627 0.47 +0.2
344,066 + MPMX19_05627 0.47 +0.7
344,067 - MPMX19_05627 0.47 +0.8
344,067 - MPMX19_05627 0.47 +0.3
344,067 - MPMX19_05627 0.47 -1.4
344,067 - MPMX19_05627 0.47 -0.6
344,067 - MPMX19_05627 0.47 +0.6
344,067 - MPMX19_05627 0.47 -0.0
344,165 + MPMX19_05627 0.55 +0.1
344,672 + -0.8
344,672 + -0.2
344,672 + -1.7
344,672 + +0.1
344,672 + +0.2
344,672 + -0.3
344,673 - +0.2
344,673 - -1.7
344,673 - -0.7
344,673 - -1.7
344,673 - -0.2
344,729 + +0.0
344,729 + -1.0
344,729 + -0.6
344,729 + +1.0
344,729 + -0.7
344,729 + +0.3
344,762 + -0.3
344,763 - -0.4
344,849 + -0.5
344,849 + -1.6
344,849 + -0.9
344,849 + +0.0
344,849 + -0.4
344,849 + -0.9
344,849 + -0.3
344,849 + +1.0
344,849 + +0.8
344,849 + -1.1
344,849 + -0.6
344,849 + +0.2
344,849 + -0.1
344,850 - +0.2
344,850 - +0.5
344,850 - +0.3
344,850 - -1.8
344,850 - +0.1
344,850 - -0.6
344,850 - -0.5
344,850 - -0.4
344,850 - -2.0
344,850 - +0.7
344,850 - -0.6
344,953 + MPMX19_05628 0.11 -0.6
344,953 + MPMX19_05628 0.11 +0.1
344,953 + MPMX19_05628 0.11 +0.1
345,092 + MPMX19_05628 0.25 +1.0
345,093 - MPMX19_05628 0.25 +0.5
345,206 + MPMX19_05628 0.37 -1.6
345,206 + MPMX19_05628 0.37 -1.7
345,206 + MPMX19_05628 0.37 -0.0
345,206 + MPMX19_05628 0.37 -1.0
345,206 + MPMX19_05628 0.37 -0.8
345,207 - MPMX19_05628 0.37 -2.2
345,278 + MPMX19_05628 0.44 -0.8
345,278 + MPMX19_05628 0.44 +0.8
345,278 + MPMX19_05628 0.44 +0.4
345,284 + MPMX19_05628 0.45 +1.8
345,285 - MPMX19_05628 0.45 +0.6
345,285 - MPMX19_05628 0.45 -0.2
345,285 - MPMX19_05628 0.45 -1.5
345,377 + MPMX19_05628 0.54 -1.2
345,377 + MPMX19_05628 0.54 -2.0
345,377 + MPMX19_05628 0.54 -0.6
345,378 - MPMX19_05628 0.54 +1.0
345,378 - MPMX19_05628 0.54 +0.8
345,575 + MPMX19_05628 0.74 -1.4
345,575 + MPMX19_05628 0.74 -1.0
345,575 + MPMX19_05628 0.74 +1.0
345,575 + MPMX19_05628 0.74 -0.9
345,575 + MPMX19_05628 0.74 +0.7
345,575 + MPMX19_05628 0.74 +0.3
345,575 + MPMX19_05628 0.74 -0.1
345,575 + MPMX19_05628 0.74 -0.4
345,575 + MPMX19_05628 0.74 -0.8
345,575 + MPMX19_05628 0.74 +0.8
345,575 + MPMX19_05628 0.74 +0.4
345,575 + MPMX19_05628 0.74 -0.6
345,575 + MPMX19_05628 0.74 +0.2
345,575 + MPMX19_05628 0.74 -0.6
345,575 + MPMX19_05628 0.74 +1.3
345,575 + MPMX19_05628 0.74 +1.4
345,575 + MPMX19_05628 0.74 +0.3
345,575 + MPMX19_05628 0.74 -1.8
345,575 + MPMX19_05628 0.74 -1.7
345,575 + MPMX19_05628 0.74 +0.0
345,575 + MPMX19_05628 0.74 +0.3
345,575 + MPMX19_05628 0.74 -1.6
345,575 + MPMX19_05628 0.74 -0.5
345,575 + MPMX19_05628 0.74 +0.6
345,575 + MPMX19_05628 0.74 +0.8
345,576 - MPMX19_05628 0.74 -0.4
345,576 - MPMX19_05628 0.74 +0.4
345,576 - MPMX19_05628 0.74 -0.4
345,576 - MPMX19_05628 0.74 -0.8
345,576 - MPMX19_05628 0.74 -1.0
345,576 - MPMX19_05628 0.74 +0.6
345,576 - MPMX19_05628 0.74 -0.4
345,576 - MPMX19_05628 0.74 +0.8
345,576 - MPMX19_05628 0.74 -0.5
345,576 - MPMX19_05628 0.74 +0.6
345,576 - MPMX19_05628 0.74 +0.2
345,576 - MPMX19_05628 0.74 -1.3
345,576 - MPMX19_05628 0.74 +0.6
345,576 - MPMX19_05628 0.74 -1.8
345,576 - MPMX19_05628 0.74 +0.5
345,576 - MPMX19_05628 0.74 +0.3
345,576 - MPMX19_05628 0.74 -0.0
345,576 - MPMX19_05628 0.74 -0.6
345,576 - MPMX19_05628 0.74 -0.8
345,576 - MPMX19_05628 0.74 -1.6
345,576 - MPMX19_05628 0.74 -0.9
345,576 - MPMX19_05628 0.74 -3.2
345,576 - MPMX19_05628 0.74 -0.0
345,576 - MPMX19_05628 0.74 +0.5
345,576 - MPMX19_05628 0.74 +1.4
345,576 - MPMX19_05628 0.74 -0.2
345,576 - MPMX19_05628 0.74 +0.1
345,576 - MPMX19_05628 0.74 +1.2

Or see this region's nucleotide sequence