Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05626

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05625 and MPMX19_05626 are separated by 87 nucleotidesMPMX19_05626 and MPMX19_05627 are separated by 407 nucleotides MPMX19_05625: MPMX19_05625 - hypothetical protein, at 339,261 to 341,465 _05625 MPMX19_05626: MPMX19_05626 - hypothetical protein, at 341,553 to 343,016 _05626 MPMX19_05627: MPMX19_05627 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 343,424 to 344,779 _05627 Position (kb) 341 342 343 344Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 340.782 kb on + strand, within MPMX19_05625at 340.782 kb on + strand, within MPMX19_05625at 340.782 kb on + strand, within MPMX19_05625at 340.782 kb on + strand, within MPMX19_05625at 340.782 kb on + strand, within MPMX19_05625at 340.782 kb on + strand, within MPMX19_05625at 340.782 kb on + strand, within MPMX19_05625at 340.782 kb on + strand, within MPMX19_05625at 340.782 kb on + strand, within MPMX19_05625at 340.782 kb on + strand, within MPMX19_05625at 340.782 kb on + strand, within MPMX19_05625at 340.782 kb on + strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 340.783 kb on - strand, within MPMX19_05625at 341.199 kb on + strand, within MPMX19_05625at 341.199 kb on + strand, within MPMX19_05625at 341.199 kb on + strand, within MPMX19_05625at 341.199 kb on + strand, within MPMX19_05625at 341.200 kb on - strand, within MPMX19_05625at 341.200 kb on - strand, within MPMX19_05625at 341.410 kb on - strandat 341.411 kb on - strandat 341.434 kb on - strandat 341.451 kb on + strandat 341.452 kb on - strandat 341.452 kb on - strandat 341.454 kb on + strandat 341.454 kb on + strandat 341.455 kb on - strandat 341.455 kb on - strandat 341.529 kb on + strandat 341.529 kb on + strandat 341.529 kb on + strandat 341.529 kb on + strandat 341.529 kb on + strandat 341.530 kb on - strandat 341.530 kb on - strandat 341.530 kb on - strandat 341.530 kb on - strandat 341.709 kb on + strand, within MPMX19_05626at 341.709 kb on + strand, within MPMX19_05626at 341.709 kb on + strand, within MPMX19_05626at 341.709 kb on + strand, within MPMX19_05626at 341.709 kb on + strand, within MPMX19_05626at 341.709 kb on + strand, within MPMX19_05626at 341.709 kb on + strand, within MPMX19_05626at 341.710 kb on - strand, within MPMX19_05626at 341.710 kb on - strand, within MPMX19_05626at 341.710 kb on - strand, within MPMX19_05626at 341.710 kb on - strand, within MPMX19_05626at 341.710 kb on - strand, within MPMX19_05626at 341.745 kb on + strand, within MPMX19_05626at 341.745 kb on + strand, within MPMX19_05626at 341.745 kb on + strand, within MPMX19_05626at 341.745 kb on + strand, within MPMX19_05626at 341.745 kb on + strand, within MPMX19_05626at 341.745 kb on + strand, within MPMX19_05626at 341.745 kb on + strand, within MPMX19_05626at 341.745 kb on + strand, within MPMX19_05626at 341.745 kb on + strand, within MPMX19_05626at 341.745 kb on + strand, within MPMX19_05626at 341.745 kb on + strand, within MPMX19_05626at 341.746 kb on - strand, within MPMX19_05626at 341.746 kb on - strand, within MPMX19_05626at 341.746 kb on - strand, within MPMX19_05626at 341.746 kb on - strand, within MPMX19_05626at 341.746 kb on - strand, within MPMX19_05626at 341.746 kb on - strand, within MPMX19_05626at 341.746 kb on - strand, within MPMX19_05626at 341.746 kb on - strand, within MPMX19_05626at 341.746 kb on - strand, within MPMX19_05626at 341.746 kb on - strand, within MPMX19_05626at 341.746 kb on - strand, within MPMX19_05626at 341.865 kb on + strand, within MPMX19_05626at 341.865 kb on + strand, within MPMX19_05626at 342.307 kb on - strand, within MPMX19_05626at 342.307 kb on - strand, within MPMX19_05626at 342.393 kb on + strand, within MPMX19_05626at 342.393 kb on + strand, within MPMX19_05626at 342.394 kb on - strand, within MPMX19_05626at 342.394 kb on - strand, within MPMX19_05626at 342.432 kb on + strand, within MPMX19_05626at 342.432 kb on + strand, within MPMX19_05626at 342.432 kb on + strand, within MPMX19_05626at 342.433 kb on - strand, within MPMX19_05626at 342.433 kb on - strand, within MPMX19_05626at 342.433 kb on - strand, within MPMX19_05626at 342.525 kb on + strand, within MPMX19_05626at 342.525 kb on + strand, within MPMX19_05626at 342.526 kb on - strand, within MPMX19_05626at 342.526 kb on - strand, within MPMX19_05626at 342.526 kb on - strand, within MPMX19_05626at 342.526 kb on - strand, within MPMX19_05626at 342.580 kb on - strand, within MPMX19_05626at 342.580 kb on - strand, within MPMX19_05626at 342.580 kb on - strand, within MPMX19_05626at 342.580 kb on - strand, within MPMX19_05626at 342.633 kb on + strand, within MPMX19_05626at 342.633 kb on + strand, within MPMX19_05626at 342.633 kb on + strand, within MPMX19_05626at 342.633 kb on + strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.634 kb on - strand, within MPMX19_05626at 342.795 kb on + strand, within MPMX19_05626at 342.795 kb on + strand, within MPMX19_05626at 342.795 kb on + strand, within MPMX19_05626at 342.796 kb on - strand, within MPMX19_05626at 342.796 kb on - strand, within MPMX19_05626at 342.796 kb on - strand, within MPMX19_05626at 342.841 kb on + strand, within MPMX19_05626at 342.943 kb on - strandat 342.943 kb on - strandat 342.943 kb on - strandat 342.943 kb on - strandat 343.106 kb on + strandat 343.171 kb on - strandat 343.173 kb on + strandat 343.174 kb on - strandat 343.179 kb on + strandat 343.182 kb on + strandat 343.183 kb on - strandat 343.265 kb on + strandat 343.265 kb on + strandat 343.265 kb on + strandat 343.266 kb on - strandat 343.266 kb on - strandat 343.266 kb on - strandat 343.266 kb on - strandat 343.374 kb on + strandat 343.374 kb on + strandat 343.374 kb on + strandat 343.374 kb on + strandat 343.374 kb on + strandat 343.374 kb on + strandat 343.374 kb on + strandat 343.375 kb on - strandat 343.375 kb on - strandat 343.375 kb on - strandat 343.375 kb on - strandat 343.375 kb on - strandat 343.450 kb on + strandat 343.450 kb on + strandat 343.451 kb on - strandat 343.451 kb on - strandat 343.475 kb on + strandat 343.475 kb on + strandat 343.476 kb on - strandat 343.476 kb on - strandat 343.476 kb on - strandat 343.476 kb on - strandat 343.690 kb on + strand, within MPMX19_05627at 343.690 kb on + strand, within MPMX19_05627at 343.690 kb on + strand, within MPMX19_05627at 343.691 kb on - strand, within MPMX19_05627at 343.691 kb on - strand, within MPMX19_05627

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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340,782 + MPMX19_05625 0.69 -1.9
340,782 + MPMX19_05625 0.69 -0.8
340,782 + MPMX19_05625 0.69 -0.9
340,782 + MPMX19_05625 0.69 +0.2
340,782 + MPMX19_05625 0.69 +0.5
340,782 + MPMX19_05625 0.69 -2.0
340,782 + MPMX19_05625 0.69 -0.2
340,782 + MPMX19_05625 0.69 +0.4
340,782 + MPMX19_05625 0.69 -2.0
340,782 + MPMX19_05625 0.69 -0.4
340,782 + MPMX19_05625 0.69 -0.2
340,782 + MPMX19_05625 0.69 +1.4
340,783 - MPMX19_05625 0.69 +0.8
340,783 - MPMX19_05625 0.69 +0.1
340,783 - MPMX19_05625 0.69 +0.2
340,783 - MPMX19_05625 0.69 +0.4
340,783 - MPMX19_05625 0.69 -1.5
340,783 - MPMX19_05625 0.69 -0.2
340,783 - MPMX19_05625 0.69 +0.5
340,783 - MPMX19_05625 0.69 -0.3
340,783 - MPMX19_05625 0.69 +0.4
340,783 - MPMX19_05625 0.69 -1.2
340,783 - MPMX19_05625 0.69 +1.1
340,783 - MPMX19_05625 0.69 -1.5
340,783 - MPMX19_05625 0.69 -0.5
340,783 - MPMX19_05625 0.69 -0.6
340,783 - MPMX19_05625 0.69 +0.6
340,783 - MPMX19_05625 0.69 +0.0
340,783 - MPMX19_05625 0.69 -1.0
340,783 - MPMX19_05625 0.69 -0.8
340,783 - MPMX19_05625 0.69 -1.4
341,199 + MPMX19_05625 0.88 -0.3
341,199 + MPMX19_05625 0.88 +0.1
341,199 + MPMX19_05625 0.88 +0.6
341,199 + MPMX19_05625 0.88 +0.2
341,200 - MPMX19_05625 0.88 -0.0
341,200 - MPMX19_05625 0.88 -1.2
341,410 - -1.6
341,411 - -0.5
341,434 - -0.1
341,451 + +0.2
341,452 - +0.1
341,452 - -0.2
341,454 + -0.6
341,454 + -1.6
341,455 - -0.7
341,455 - +0.8
341,529 + +0.5
341,529 + +0.2
341,529 + -0.2
341,529 + -0.0
341,529 + -0.2
341,530 - +0.8
341,530 - -0.4
341,530 - -0.8
341,530 - -2.6
341,709 + MPMX19_05626 0.11 +0.1
341,709 + MPMX19_05626 0.11 -0.1
341,709 + MPMX19_05626 0.11 -1.0
341,709 + MPMX19_05626 0.11 -0.2
341,709 + MPMX19_05626 0.11 -0.2
341,709 + MPMX19_05626 0.11 -0.5
341,709 + MPMX19_05626 0.11 -1.2
341,710 - MPMX19_05626 0.11 +0.1
341,710 - MPMX19_05626 0.11 -1.6
341,710 - MPMX19_05626 0.11 -1.5
341,710 - MPMX19_05626 0.11 -0.4
341,710 - MPMX19_05626 0.11 +0.3
341,745 + MPMX19_05626 0.13 +1.8
341,745 + MPMX19_05626 0.13 -1.0
341,745 + MPMX19_05626 0.13 +3.0
341,745 + MPMX19_05626 0.13 +0.9
341,745 + MPMX19_05626 0.13 +0.2
341,745 + MPMX19_05626 0.13 -0.1
341,745 + MPMX19_05626 0.13 -0.4
341,745 + MPMX19_05626 0.13 +0.3
341,745 + MPMX19_05626 0.13 -0.8
341,745 + MPMX19_05626 0.13 +0.3
341,745 + MPMX19_05626 0.13 +0.4
341,746 - MPMX19_05626 0.13 +0.5
341,746 - MPMX19_05626 0.13 -0.2
341,746 - MPMX19_05626 0.13 -2.2
341,746 - MPMX19_05626 0.13 -0.9
341,746 - MPMX19_05626 0.13 -0.7
341,746 - MPMX19_05626 0.13 -1.0
341,746 - MPMX19_05626 0.13 -1.8
341,746 - MPMX19_05626 0.13 +0.0
341,746 - MPMX19_05626 0.13 +0.8
341,746 - MPMX19_05626 0.13 -2.1
341,746 - MPMX19_05626 0.13 +0.0
341,865 + MPMX19_05626 0.21 -0.6
341,865 + MPMX19_05626 0.21 +0.0
342,307 - MPMX19_05626 0.52 +0.9
342,307 - MPMX19_05626 0.52 -1.8
342,393 + MPMX19_05626 0.57 +0.1
342,393 + MPMX19_05626 0.57 +0.2
342,394 - MPMX19_05626 0.57 +0.8
342,394 - MPMX19_05626 0.57 -0.1
342,432 + MPMX19_05626 0.60 +0.8
342,432 + MPMX19_05626 0.60 +1.0
342,432 + MPMX19_05626 0.60 +0.7
342,433 - MPMX19_05626 0.60 -2.1
342,433 - MPMX19_05626 0.60 -2.8
342,433 - MPMX19_05626 0.60 +0.5
342,525 + MPMX19_05626 0.66 -1.0
342,525 + MPMX19_05626 0.66 -0.2
342,526 - MPMX19_05626 0.66 -0.4
342,526 - MPMX19_05626 0.66 -1.4
342,526 - MPMX19_05626 0.66 -1.4
342,526 - MPMX19_05626 0.66 +1.1
342,580 - MPMX19_05626 0.70 +0.4
342,580 - MPMX19_05626 0.70 -1.7
342,580 - MPMX19_05626 0.70 +0.4
342,580 - MPMX19_05626 0.70 +0.3
342,633 + MPMX19_05626 0.74 -0.6
342,633 + MPMX19_05626 0.74 -0.5
342,633 + MPMX19_05626 0.74 +1.1
342,633 + MPMX19_05626 0.74 -1.6
342,634 - MPMX19_05626 0.74 +0.0
342,634 - MPMX19_05626 0.74 +0.5
342,634 - MPMX19_05626 0.74 +0.3
342,634 - MPMX19_05626 0.74 +0.6
342,634 - MPMX19_05626 0.74 -1.0
342,634 - MPMX19_05626 0.74 +0.1
342,634 - MPMX19_05626 0.74 +0.8
342,634 - MPMX19_05626 0.74 -1.0
342,634 - MPMX19_05626 0.74 -1.0
342,634 - MPMX19_05626 0.74 -0.6
342,634 - MPMX19_05626 0.74 -0.2
342,795 + MPMX19_05626 0.85 -0.1
342,795 + MPMX19_05626 0.85 -1.1
342,795 + MPMX19_05626 0.85 -1.2
342,796 - MPMX19_05626 0.85 +0.3
342,796 - MPMX19_05626 0.85 -0.3
342,796 - MPMX19_05626 0.85 +0.4
342,841 + MPMX19_05626 0.88 +1.4
342,943 - +0.8
342,943 - -1.2
342,943 - +0.1
342,943 - -0.5
343,106 + -0.8
343,171 - -1.6
343,173 + -0.8
343,174 - -0.6
343,179 + -2.2
343,182 + -0.0
343,183 - +0.2
343,265 + -1.4
343,265 + -0.4
343,265 + -0.5
343,266 - -1.4
343,266 - -1.6
343,266 - +0.2
343,266 - -0.2
343,374 + -1.9
343,374 + -0.7
343,374 + -1.6
343,374 + +0.3
343,374 + -1.4
343,374 + -1.2
343,374 + +1.8
343,375 - +0.4
343,375 - -0.4
343,375 - +0.1
343,375 - -1.0
343,375 - -1.2
343,450 + +0.0
343,450 + +0.3
343,451 - -0.7
343,451 - -1.6
343,475 + -0.6
343,475 + -0.9
343,476 - +0.8
343,476 - -0.2
343,476 - -1.4
343,476 - -0.3
343,690 + MPMX19_05627 0.20 +1.4
343,690 + MPMX19_05627 0.20 +0.6
343,690 + MPMX19_05627 0.20 -2.0
343,691 - MPMX19_05627 0.20 +0.8
343,691 - MPMX19_05627 0.20 -0.5

Or see this region's nucleotide sequence