Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05496 and MPMX19_05497 are separated by 1 nucleotides MPMX19_05497 and MPMX19_05498 are separated by 3 nucleotides MPMX19_05498 and MPMX19_05499 overlap by 4 nucleotides
MPMX19_05496: MPMX19_05496 - hypothetical protein, at 200,597 to 200,950
_05496
MPMX19_05497: MPMX19_05497 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 200,952 to 201,662
_05497
MPMX19_05498: MPMX19_05498 - Lipopolysaccharide export system ATP-binding protein LptB, at 201,666 to 202,565
_05498
MPMX19_05499: MPMX19_05499 - hypothetical protein, at 202,562 to 204,052
_05499
Position (kb) 201
202
203 Strain fitness (log2 ratio) -1
0
1 at 200.820 kb on + strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.972 kb on - strand at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 200,820 + MPMX19_05496 0.63 -0.5 200,820 + MPMX19_05496 0.63 -0.5 200,820 + MPMX19_05496 0.63 +0.8 200,820 + MPMX19_05496 0.63 +1.5 200,972 - -0.5 202,373 - MPMX19_05498 0.79 -0.4 202,373 - MPMX19_05498 0.79 -0.2 202,373 - MPMX19_05498 0.79 +0.2 202,373 - MPMX19_05498 0.79 -0.0 202,373 - MPMX19_05498 0.79 -0.3 202,373 - MPMX19_05498 0.79 +1.3 202,373 - MPMX19_05498 0.79 +0.1 202,373 - MPMX19_05498 0.79 +0.2 202,373 - MPMX19_05498 0.79 +0.4 202,373 - MPMX19_05498 0.79 -1.6 202,373 - MPMX19_05498 0.79 +1.0
Or see this region's nucleotide sequence