Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05470 and MPMX19_05471 are separated by 21 nucleotides MPMX19_05471 and MPMX19_05472 are separated by 88 nucleotides MPMX19_05472 and MPMX19_05473 are separated by 244 nucleotides MPMX19_05473 and MPMX19_05474 overlap by 4 nucleotides
MPMX19_05470: MPMX19_05470 - hypothetical protein, at 168,200 to 170,269
_05470
MPMX19_05471: MPMX19_05471 - Thioredoxin 2, at 170,291 to 170,791
_05471
MPMX19_05472: MPMX19_05472 - hypothetical protein, at 170,880 to 171,134
_05472
MPMX19_05473: MPMX19_05473 - hypothetical protein, at 171,379 to 171,885
_05473
MPMX19_05474: MPMX19_05474 - hypothetical protein, at 171,882 to 172,325
_05474
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.267 kb on + strand at 170.293 kb on - strand at 170.566 kb on + strand, within MPMX19_05471 at 170.567 kb on - strand, within MPMX19_05471 at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.881 kb on + strand at 170.882 kb on - strand at 170.882 kb on - strand at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.995 kb on + strand, within MPMX19_05472 at 170.995 kb on + strand, within MPMX19_05472 at 170.996 kb on - strand, within MPMX19_05472 at 171.052 kb on + strand, within MPMX19_05472 at 171.195 kb on + strand at 171.196 kb on - strand at 171.223 kb on - strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.239 kb on - strand at 171.239 kb on - strand at 171.239 kb on - strand at 171.299 kb on + strand at 171.299 kb on + strand at 171.299 kb on + strand at 171.299 kb on + strand at 171.299 kb on + strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.602 kb on + strand, within MPMX19_05473 at 171.602 kb on + strand, within MPMX19_05473 at 171.603 kb on - strand, within MPMX19_05473 at 171.603 kb on - strand, within MPMX19_05473 at 171.603 kb on - strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.726 kb on - strand, within MPMX19_05473
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 170,267 + +1.3 170,293 - +0.2 170,566 + MPMX19_05471 0.55 -0.4 170,567 - MPMX19_05471 0.55 +0.0 170,832 + +0.8 170,832 + -0.9 170,832 + -2.0 170,832 + -0.0 170,832 + -0.3 170,832 + -1.5 170,832 + -1.1 170,832 + -2.7 170,832 + -0.2 170,832 + +1.1 170,832 + -0.8 170,832 + +1.1 170,833 - -0.2 170,833 - -0.4 170,833 - -2.4 170,833 - +0.1 170,833 - -0.9 170,833 - -1.3 170,833 - -1.3 170,833 - -1.1 170,833 - +0.2 170,881 + -0.0 170,882 - +0.2 170,882 - -0.1 170,926 + MPMX19_05472 0.18 -1.0 170,926 + MPMX19_05472 0.18 -2.3 170,926 + MPMX19_05472 0.18 -1.8 170,926 + MPMX19_05472 0.18 +0.5 170,926 + MPMX19_05472 0.18 +1.3 170,926 + MPMX19_05472 0.18 -1.0 170,927 - MPMX19_05472 0.18 +1.8 170,927 - MPMX19_05472 0.18 +0.5 170,927 - MPMX19_05472 0.18 -2.4 170,927 - MPMX19_05472 0.18 -2.1 170,927 - MPMX19_05472 0.18 -0.3 170,927 - MPMX19_05472 0.18 -2.0 170,927 - MPMX19_05472 0.18 -1.4 170,995 + MPMX19_05472 0.45 -1.7 170,995 + MPMX19_05472 0.45 -1.5 170,996 - MPMX19_05472 0.45 -0.0 171,052 + MPMX19_05472 0.67 +2.2 171,195 + -2.0 171,196 - -1.9 171,223 - -0.2 171,238 + -1.4 171,238 + -0.1 171,238 + -1.4 171,238 + -0.7 171,239 - -2.0 171,239 - -0.0 171,239 - -0.5 171,299 + -1.4 171,299 + -1.0 171,299 + -0.2 171,299 + -0.5 171,299 + +0.5 171,300 - +1.2 171,300 - -1.1 171,300 - +1.1 171,300 - +1.4 171,300 - -0.2 171,300 - -1.0 171,602 + MPMX19_05473 0.44 -1.3 171,602 + MPMX19_05473 0.44 -0.9 171,603 - MPMX19_05473 0.44 +0.8 171,603 - MPMX19_05473 0.44 -0.8 171,603 - MPMX19_05473 0.44 +0.2 171,623 + MPMX19_05473 0.48 +1.1 171,623 + MPMX19_05473 0.48 -2.3 171,623 + MPMX19_05473 0.48 -2.5 171,623 + MPMX19_05473 0.48 -0.9 171,623 + MPMX19_05473 0.48 +0.3 171,623 + MPMX19_05473 0.48 +0.3 171,624 - MPMX19_05473 0.48 -1.7 171,624 - MPMX19_05473 0.48 -0.4 171,624 - MPMX19_05473 0.48 +0.1 171,624 - MPMX19_05473 0.48 +0.4 171,624 - MPMX19_05473 0.48 +0.2 171,726 - MPMX19_05473 0.68 -0.2
Or see this region's nucleotide sequence