Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05439 and MPMX19_05440 are separated by 73 nucleotides MPMX19_05440 and MPMX19_05441 are separated by 37 nucleotides
MPMX19_05439: MPMX19_05439 - hypothetical protein, at 128,704 to 129,723
_05439
MPMX19_05440: MPMX19_05440 - hypothetical protein, at 129,797 to 130,318
_05440
MPMX19_05441: MPMX19_05441 - RNA polymerase sigma factor RpoH, at 130,356 to 131,246
_05441
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 128.801 kb on + strand at 128.802 kb on - strand at 128.802 kb on - strand at 128.802 kb on - strand at 128.958 kb on + strand, within MPMX19_05439 at 128.958 kb on + strand, within MPMX19_05439 at 128.959 kb on - strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.287 kb on + strand, within MPMX19_05439 at 129.287 kb on + strand, within MPMX19_05439 at 129.288 kb on - strand, within MPMX19_05439 at 129.288 kb on - strand, within MPMX19_05439 at 129.288 kb on - strand, within MPMX19_05439 at 129.414 kb on + strand, within MPMX19_05439 at 129.414 kb on + strand, within MPMX19_05439 at 129.414 kb on + strand, within MPMX19_05439 at 129.414 kb on + strand, within MPMX19_05439 at 129.415 kb on - strand, within MPMX19_05439 at 129.415 kb on - strand, within MPMX19_05439 at 129.438 kb on + strand, within MPMX19_05439 at 129.684 kb on + strand at 129.685 kb on - strand at 129.685 kb on - strand at 129.744 kb on + strand at 129.744 kb on + strand at 129.745 kb on - strand at 129.755 kb on + strand at 129.755 kb on + strand at 129.755 kb on + strand at 129.756 kb on - strand at 129.756 kb on - strand at 129.756 kb on - strand at 129.778 kb on + strand at 129.778 kb on + strand at 129.778 kb on + strand at 129.778 kb on + strand at 129.778 kb on + strand at 129.779 kb on - strand at 129.779 kb on - strand at 129.779 kb on - strand at 129.779 kb on - strand at 129.921 kb on + strand, within MPMX19_05440 at 129.921 kb on + strand, within MPMX19_05440 at 129.921 kb on + strand, within MPMX19_05440 at 129.921 kb on + strand, within MPMX19_05440 at 129.921 kb on + strand, within MPMX19_05440 at 129.921 kb on + strand, within MPMX19_05440 at 129.921 kb on + strand, within MPMX19_05440 at 129.922 kb on - strand, within MPMX19_05440 at 129.922 kb on - strand, within MPMX19_05440 at 129.922 kb on - strand, within MPMX19_05440 at 129.922 kb on - strand, within MPMX19_05440 at 130.132 kb on + strand, within MPMX19_05440 at 130.132 kb on + strand, within MPMX19_05440 at 130.132 kb on + strand, within MPMX19_05440 at 130.132 kb on + strand, within MPMX19_05440 at 130.133 kb on - strand, within MPMX19_05440 at 130.133 kb on - strand, within MPMX19_05440 at 130.357 kb on + strand at 130.357 kb on + strand at 130.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 128,801 + -1.0 128,802 - +0.8 128,802 - -2.0 128,802 - -0.5 128,958 + MPMX19_05439 0.25 -0.1 128,958 + MPMX19_05439 0.25 -1.0 128,959 - MPMX19_05439 0.25 -1.3 129,152 + MPMX19_05439 0.44 +0.1 129,152 + MPMX19_05439 0.44 -0.9 129,152 + MPMX19_05439 0.44 -0.4 129,152 + MPMX19_05439 0.44 -1.5 129,152 + MPMX19_05439 0.44 +0.3 129,152 + MPMX19_05439 0.44 +1.2 129,152 + MPMX19_05439 0.44 -1.5 129,152 + MPMX19_05439 0.44 -0.3 129,153 - MPMX19_05439 0.44 -1.2 129,153 - MPMX19_05439 0.44 +0.6 129,153 - MPMX19_05439 0.44 -0.2 129,153 - MPMX19_05439 0.44 +0.5 129,153 - MPMX19_05439 0.44 +1.8 129,153 - MPMX19_05439 0.44 -0.9 129,287 + MPMX19_05439 0.57 -0.2 129,287 + MPMX19_05439 0.57 +0.6 129,288 - MPMX19_05439 0.57 +0.6 129,288 - MPMX19_05439 0.57 -0.0 129,288 - MPMX19_05439 0.57 -0.0 129,414 + MPMX19_05439 0.70 -1.8 129,414 + MPMX19_05439 0.70 +0.5 129,414 + MPMX19_05439 0.70 -1.4 129,414 + MPMX19_05439 0.70 -0.3 129,415 - MPMX19_05439 0.70 -1.3 129,415 - MPMX19_05439 0.70 -0.2 129,438 + MPMX19_05439 0.72 -1.0 129,684 + +0.1 129,685 - +0.5 129,685 - +0.7 129,744 + -1.0 129,744 + -1.7 129,745 - -0.1 129,755 + +0.1 129,755 + +0.5 129,755 + +0.8 129,756 - +0.6 129,756 - -0.9 129,756 - -1.1 129,778 + -0.3 129,778 + +0.6 129,778 + +0.3 129,778 + -1.0 129,778 + -0.3 129,779 - -0.3 129,779 - +0.4 129,779 - +0.3 129,779 - -1.1 129,921 + MPMX19_05440 0.24 +1.0 129,921 + MPMX19_05440 0.24 +1.1 129,921 + MPMX19_05440 0.24 -0.5 129,921 + MPMX19_05440 0.24 -1.0 129,921 + MPMX19_05440 0.24 +0.2 129,921 + MPMX19_05440 0.24 -0.1 129,921 + MPMX19_05440 0.24 -0.1 129,922 - MPMX19_05440 0.24 +0.3 129,922 - MPMX19_05440 0.24 -0.3 129,922 - MPMX19_05440 0.24 +0.7 129,922 - MPMX19_05440 0.24 -0.0 130,132 + MPMX19_05440 0.64 -0.8 130,132 + MPMX19_05440 0.64 -2.1 130,132 + MPMX19_05440 0.64 +0.2 130,132 + MPMX19_05440 0.64 -1.2 130,133 - MPMX19_05440 0.64 +1.6 130,133 - MPMX19_05440 0.64 +3.4 130,357 + -1.2 130,357 + +0.3 130,358 - +1.6
Or see this region's nucleotide sequence