Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05393 and MPMX19_05394 are separated by 210 nucleotides MPMX19_05394 and MPMX19_05395 are separated by 186 nucleotides MPMX19_05395 and MPMX19_05396 overlap by 8 nucleotides
MPMX19_05393: MPMX19_05393 - hypothetical protein, at 72,183 to 73,124
_05393
MPMX19_05394: MPMX19_05394 - L-cystine-binding protein FliY, at 73,335 to 74,138
_05394
MPMX19_05395: MPMX19_05395 - L-cystine transport system permease protein TcyB, at 74,325 to 74,999
_05395
MPMX19_05396: MPMX19_05396 - L-cystine transport system permease protein YecS, at 74,992 to 75,642
_05396
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2 at 72.614 kb on - strand, within MPMX19_05393 at 72.614 kb on - strand, within MPMX19_05393 at 72.614 kb on - strand, within MPMX19_05393 at 72.892 kb on + strand, within MPMX19_05393 at 72.893 kb on - strand, within MPMX19_05393 at 73.022 kb on + strand, within MPMX19_05393 at 73.023 kb on - strand, within MPMX19_05393 at 73.023 kb on - strand, within MPMX19_05393 at 73.039 kb on + strand at 73.039 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.232 kb on + strand at 73.232 kb on + strand at 73.232 kb on + strand at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.530 kb on + strand, within MPMX19_05394 at 73.531 kb on - strand, within MPMX19_05394 at 73.531 kb on - strand, within MPMX19_05394 at 73.531 kb on - strand, within MPMX19_05394 at 73.617 kb on + strand, within MPMX19_05394 at 73.617 kb on + strand, within MPMX19_05394 at 73.617 kb on + strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.857 kb on + strand, within MPMX19_05394 at 73.857 kb on + strand, within MPMX19_05394 at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.332 kb on - strand at 74.332 kb on - strand at 74.332 kb on - strand at 74.332 kb on - strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.634 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.917 kb on - strand, within MPMX19_05395 at 74.917 kb on - strand, within MPMX19_05395 at 74.917 kb on - strand, within MPMX19_05395
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 72,614 - MPMX19_05393 0.46 -1.5 72,614 - MPMX19_05393 0.46 -0.8 72,614 - MPMX19_05393 0.46 -0.0 72,892 + MPMX19_05393 0.75 -1.7 72,893 - MPMX19_05393 0.75 +1.5 73,022 + MPMX19_05393 0.89 -0.3 73,023 - MPMX19_05393 0.89 -1.2 73,023 - MPMX19_05393 0.89 -0.5 73,039 + -1.1 73,039 + +0.6 73,194 + -0.4 73,194 + -0.2 73,194 + -0.9 73,194 + -2.4 73,194 + -1.4 73,194 + -1.4 73,194 + +1.3 73,194 + -2.0 73,194 + -0.1 73,194 + +0.5 73,195 - -0.1 73,195 - -0.5 73,195 - -2.5 73,195 - -1.2 73,195 - -1.4 73,195 - +0.5 73,195 - -0.0 73,195 - -0.8 73,195 - +1.8 73,195 - -1.4 73,195 - -1.0 73,195 - -0.9 73,232 + +1.3 73,232 + +1.3 73,232 + +0.6 73,416 + MPMX19_05394 0.10 -0.8 73,416 + MPMX19_05394 0.10 -0.3 73,416 + MPMX19_05394 0.10 -2.0 73,416 + MPMX19_05394 0.10 -0.8 73,416 + MPMX19_05394 0.10 +1.4 73,416 + MPMX19_05394 0.10 +0.5 73,416 + MPMX19_05394 0.10 -0.6 73,416 + MPMX19_05394 0.10 -2.4 73,416 + MPMX19_05394 0.10 +0.5 73,416 + MPMX19_05394 0.10 -0.1 73,416 + MPMX19_05394 0.10 +0.1 73,416 + MPMX19_05394 0.10 -0.5 73,416 + MPMX19_05394 0.10 -0.5 73,416 + MPMX19_05394 0.10 +0.2 73,416 + MPMX19_05394 0.10 -0.8 73,416 + MPMX19_05394 0.10 +0.2 73,416 + MPMX19_05394 0.10 -0.1 73,416 + MPMX19_05394 0.10 -0.9 73,416 + MPMX19_05394 0.10 +1.8 73,416 + MPMX19_05394 0.10 +0.6 73,417 - MPMX19_05394 0.10 -0.7 73,417 - MPMX19_05394 0.10 -1.5 73,417 - MPMX19_05394 0.10 +0.8 73,417 - MPMX19_05394 0.10 -0.5 73,417 - MPMX19_05394 0.10 +0.8 73,417 - MPMX19_05394 0.10 -0.8 73,417 - MPMX19_05394 0.10 -1.0 73,417 - MPMX19_05394 0.10 -0.4 73,417 - MPMX19_05394 0.10 -1.4 73,417 - MPMX19_05394 0.10 +0.6 73,417 - MPMX19_05394 0.10 -1.0 73,530 + MPMX19_05394 0.24 -0.4 73,531 - MPMX19_05394 0.24 -0.0 73,531 - MPMX19_05394 0.24 -1.1 73,531 - MPMX19_05394 0.24 +0.8 73,617 + MPMX19_05394 0.35 +0.9 73,617 + MPMX19_05394 0.35 -1.3 73,617 + MPMX19_05394 0.35 -1.0 73,618 - MPMX19_05394 0.35 +0.6 73,618 - MPMX19_05394 0.35 -0.4 73,618 - MPMX19_05394 0.35 +0.4 73,618 - MPMX19_05394 0.35 -0.3 73,618 - MPMX19_05394 0.35 +1.5 73,618 - MPMX19_05394 0.35 -0.5 73,618 - MPMX19_05394 0.35 -1.8 73,618 - MPMX19_05394 0.35 -1.0 73,716 + MPMX19_05394 0.47 -1.1 73,716 + MPMX19_05394 0.47 -1.6 73,716 + MPMX19_05394 0.47 +0.8 73,716 + MPMX19_05394 0.47 -0.9 73,716 + MPMX19_05394 0.47 -1.2 73,716 + MPMX19_05394 0.47 +2.2 73,716 + MPMX19_05394 0.47 -2.0 73,716 + MPMX19_05394 0.47 -0.2 73,716 + MPMX19_05394 0.47 -0.8 73,716 + MPMX19_05394 0.47 -0.8 73,716 + MPMX19_05394 0.47 -1.1 73,717 - MPMX19_05394 0.48 -1.4 73,717 - MPMX19_05394 0.48 +0.2 73,717 - MPMX19_05394 0.48 -2.4 73,717 - MPMX19_05394 0.48 +0.2 73,717 - MPMX19_05394 0.48 +0.1 73,717 - MPMX19_05394 0.48 +1.0 73,717 - MPMX19_05394 0.48 -0.5 73,857 + MPMX19_05394 0.65 -0.8 73,857 + MPMX19_05394 0.65 -0.6 74,141 + -0.6 74,141 + +0.9 74,141 + -1.3 74,141 + +0.1 74,141 + -1.4 74,141 + +0.7 74,141 + -0.5 74,141 + -0.7 74,141 + -1.6 74,141 + -1.0 74,141 + -0.7 74,141 + -0.8 74,141 + +0.1 74,141 + -1.7 74,141 + -0.4 74,141 + -0.8 74,141 + -0.5 74,141 + +0.2 74,141 + +0.1 74,142 - -0.9 74,142 - -1.3 74,142 - -0.5 74,142 - -0.4 74,142 - -1.3 74,142 - +0.2 74,142 - -0.7 74,142 - +0.6 74,142 - -1.7 74,142 - -0.2 74,142 - -0.5 74,142 - -0.2 74,142 - -0.0 74,142 - -0.3 74,142 - +0.2 74,142 - -1.2 74,142 - +0.2 74,142 - -0.3 74,142 - -2.1 74,142 - +0.1 74,331 + -1.2 74,331 + -2.7 74,331 + -1.3 74,331 + -0.4 74,331 + -1.5 74,331 + -0.6 74,332 - -1.0 74,332 - -1.5 74,332 - -0.5 74,332 - +0.2 74,361 + +0.2 74,361 + -0.8 74,361 + +0.9 74,361 + -1.8 74,361 + -0.5 74,362 - -0.5 74,362 - +0.4 74,362 - +0.4 74,362 - +0.2 74,362 - +0.7 74,363 + +1.2 74,363 + +1.2 74,363 + -1.1 74,363 + -0.5 74,363 + -0.1 74,363 + +0.6 74,363 + -2.2 74,363 + +0.6 74,363 + -1.0 74,363 + -1.0 74,364 - +0.9 74,364 - +0.4 74,364 - -0.8 74,364 - -0.3 74,364 - -1.2 74,364 - +1.1 74,364 - -0.2 74,364 - -0.1 74,364 - +0.1 74,364 - -1.3 74,364 - -2.4 74,364 - -0.5 74,364 - +0.8 74,364 - -1.1 74,364 - -1.2 74,364 - -0.6 74,364 - -0.1 74,364 - -0.8 74,502 + MPMX19_05395 0.26 -1.0 74,502 + MPMX19_05395 0.26 +0.4 74,502 + MPMX19_05395 0.26 -1.1 74,502 + MPMX19_05395 0.26 -0.1 74,502 + MPMX19_05395 0.26 +0.0 74,502 + MPMX19_05395 0.26 -0.8 74,502 + MPMX19_05395 0.26 -1.8 74,502 + MPMX19_05395 0.26 +1.4 74,502 + MPMX19_05395 0.26 +0.6 74,502 + MPMX19_05395 0.26 +0.7 74,502 + MPMX19_05395 0.26 -1.5 74,502 + MPMX19_05395 0.26 -0.1 74,503 - MPMX19_05395 0.26 -2.3 74,503 - MPMX19_05395 0.26 +0.3 74,503 - MPMX19_05395 0.26 +0.1 74,503 - MPMX19_05395 0.26 -1.0 74,503 - MPMX19_05395 0.26 -1.5 74,503 - MPMX19_05395 0.26 -0.7 74,503 - MPMX19_05395 0.26 -1.4 74,503 - MPMX19_05395 0.26 -0.1 74,503 - MPMX19_05395 0.26 +0.0 74,503 - MPMX19_05395 0.26 -0.6 74,503 - MPMX19_05395 0.26 +0.1 74,578 + MPMX19_05395 0.37 -1.5 74,578 + MPMX19_05395 0.37 +0.1 74,578 + MPMX19_05395 0.37 +0.6 74,578 + MPMX19_05395 0.37 -0.3 74,578 + MPMX19_05395 0.37 -1.9 74,578 + MPMX19_05395 0.37 -2.1 74,578 + MPMX19_05395 0.37 -1.8 74,579 - MPMX19_05395 0.38 -0.0 74,579 - MPMX19_05395 0.38 -0.5 74,579 - MPMX19_05395 0.38 +1.2 74,579 - MPMX19_05395 0.38 -1.3 74,579 - MPMX19_05395 0.38 +0.1 74,634 + MPMX19_05395 0.46 +1.3 74,733 + MPMX19_05395 0.60 -1.3 74,733 + MPMX19_05395 0.60 -0.0 74,733 + MPMX19_05395 0.60 -1.8 74,733 + MPMX19_05395 0.60 -0.2 74,733 + MPMX19_05395 0.60 -0.3 74,733 + MPMX19_05395 0.60 -0.9 74,734 - MPMX19_05395 0.61 +1.3 74,734 - MPMX19_05395 0.61 -2.1 74,734 - MPMX19_05395 0.61 -1.4 74,734 - MPMX19_05395 0.61 -1.0 74,734 - MPMX19_05395 0.61 -0.4 74,734 - MPMX19_05395 0.61 +0.7 74,734 - MPMX19_05395 0.61 -1.0 74,895 + MPMX19_05395 0.84 -0.1 74,895 + MPMX19_05395 0.84 +0.5 74,895 + MPMX19_05395 0.84 +1.4 74,895 + MPMX19_05395 0.84 +0.2 74,896 - MPMX19_05395 0.85 -0.0 74,896 - MPMX19_05395 0.85 -0.1 74,896 - MPMX19_05395 0.85 -0.6 74,896 - MPMX19_05395 0.85 +2.6 74,896 - MPMX19_05395 0.85 -0.1 74,896 - MPMX19_05395 0.85 +0.1 74,896 - MPMX19_05395 0.85 -0.6 74,916 + MPMX19_05395 0.88 +0.4 74,916 + MPMX19_05395 0.88 +0.5 74,916 + MPMX19_05395 0.88 -0.4 74,916 + MPMX19_05395 0.88 -1.2 74,916 + MPMX19_05395 0.88 +0.5 74,917 - MPMX19_05395 0.88 -1.1 74,917 - MPMX19_05395 0.88 -1.0 74,917 - MPMX19_05395 0.88 +0.1
Or see this region's nucleotide sequence