Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05361 and MPMX19_05362 are separated by 107 nucleotides MPMX19_05362 and MPMX19_05363 are separated by 209 nucleotides MPMX19_05363 and MPMX19_05364 are separated by 6 nucleotides MPMX19_05364 and MPMX19_05365 are separated by 17 nucleotides
MPMX19_05361: MPMX19_05361 - CRP-like cAMP-activated global transcriptional regulator, at 36,962 to 37,672
_05361
MPMX19_05362: MPMX19_05362 - hypothetical protein, at 37,780 to 38,160
_05362
MPMX19_05363: MPMX19_05363 - D-beta-hydroxybutyrate dehydrogenase, at 38,370 to 39,158
_05363
MPMX19_05364: MPMX19_05364 - Acetate CoA-transferase subunit beta, at 39,165 to 39,818
_05364
MPMX19_05365: MPMX19_05365 - Acetate CoA-transferase subunit alpha, at 39,836 to 40,495
_05365
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1
2 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.609 kb on + strand at 37.609 kb on + strand at 37.610 kb on - strand at 37.610 kb on - strand at 37.670 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.691 kb on + strand at 37.691 kb on + strand at 37.691 kb on + strand at 37.692 kb on - strand at 37.692 kb on - strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.821 kb on + strand, within MPMX19_05362 at 37.822 kb on - strand, within MPMX19_05362 at 37.897 kb on + strand, within MPMX19_05362 at 37.897 kb on + strand, within MPMX19_05362 at 37.935 kb on + strand, within MPMX19_05362 at 37.935 kb on + strand, within MPMX19_05362 at 37.935 kb on + strand, within MPMX19_05362 at 37.936 kb on - strand, within MPMX19_05362 at 38.243 kb on - strand at 38.304 kb on + strand at 38.304 kb on + strand at 38.344 kb on + strand at 38.344 kb on + strand at 38.344 kb on + strand at 38.345 kb on - strand at 38.345 kb on - strand at 38.345 kb on - strand at 38.345 kb on - strand at 38.372 kb on - strand at 38.372 kb on - strand at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.789 kb on + strand, within MPMX19_05363 at 38.789 kb on + strand, within MPMX19_05363 at 38.911 kb on + strand, within MPMX19_05363 at 38.911 kb on + strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 39.031 kb on + strand, within MPMX19_05363 at 39.031 kb on + strand, within MPMX19_05363 at 39.031 kb on + strand, within MPMX19_05363 at 39.031 kb on + strand, within MPMX19_05363 at 39.032 kb on - strand, within MPMX19_05363 at 39.032 kb on - strand, within MPMX19_05363 at 39.166 kb on + strand at 39.166 kb on + strand at 39.718 kb on + strand, within MPMX19_05364 at 39.718 kb on + strand, within MPMX19_05364 at 39.718 kb on + strand, within MPMX19_05364 at 39.718 kb on + strand, within MPMX19_05364 at 39.718 kb on + strand, within MPMX19_05364 at 39.718 kb on + strand, within MPMX19_05364 at 39.718 kb on + strand, within MPMX19_05364 at 39.718 kb on + strand, within MPMX19_05364 at 39.718 kb on + strand, within MPMX19_05364 at 39.718 kb on + strand, within MPMX19_05364 at 39.719 kb on - strand, within MPMX19_05364 at 39.719 kb on - strand, within MPMX19_05364 at 39.719 kb on - strand, within MPMX19_05364 at 39.719 kb on - strand, within MPMX19_05364 at 39.719 kb on - strand, within MPMX19_05364 at 39.719 kb on - strand, within MPMX19_05364 at 39.827 kb on - strand at 39.861 kb on + strand at 39.861 kb on + strand at 39.861 kb on + strand at 39.861 kb on + strand at 39.861 kb on + strand at 39.861 kb on + strand at 39.861 kb on + strand at 39.861 kb on + strand at 39.861 kb on + strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.862 kb on - strand at 39.996 kb on + strand, within MPMX19_05365 at 39.996 kb on + strand, within MPMX19_05365 at 39.996 kb on + strand, within MPMX19_05365 at 39.996 kb on + strand, within MPMX19_05365 at 39.997 kb on - strand, within MPMX19_05365 at 39.997 kb on - strand, within MPMX19_05365 at 39.997 kb on - strand, within MPMX19_05365 at 39.997 kb on - strand, within MPMX19_05365 at 40.011 kb on + strand, within MPMX19_05365 at 40.012 kb on - strand, within MPMX19_05365 at 40.012 kb on - strand, within MPMX19_05365 at 40.074 kb on + strand, within MPMX19_05365 at 40.074 kb on + strand, within MPMX19_05365 at 40.074 kb on + strand, within MPMX19_05365 at 40.074 kb on + strand, within MPMX19_05365 at 40.074 kb on + strand, within MPMX19_05365 at 40.074 kb on + strand, within MPMX19_05365 at 40.074 kb on + strand, within MPMX19_05365 at 40.074 kb on + strand, within MPMX19_05365 at 40.074 kb on + strand, within MPMX19_05365 at 40.074 kb on + strand, within MPMX19_05365 at 40.074 kb on + strand, within MPMX19_05365 at 40.074 kb on + strand, within MPMX19_05365 at 40.075 kb on - strand, within MPMX19_05365 at 40.075 kb on - strand, within MPMX19_05365 at 40.075 kb on - strand, within MPMX19_05365 at 40.075 kb on - strand, within MPMX19_05365 at 40.075 kb on - strand, within MPMX19_05365 at 40.075 kb on - strand, within MPMX19_05365 at 40.075 kb on - strand, within MPMX19_05365 at 40.075 kb on - strand, within MPMX19_05365 at 40.075 kb on - strand, within MPMX19_05365 at 40.075 kb on - strand, within MPMX19_05365 at 40.075 kb on - strand, within MPMX19_05365
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 37,460 + MPMX19_05361 0.70 -0.0 37,460 + MPMX19_05361 0.70 -1.0 37,460 + MPMX19_05361 0.70 -0.9 37,460 + MPMX19_05361 0.70 -0.2 37,460 + MPMX19_05361 0.70 -0.9 37,460 + MPMX19_05361 0.70 +0.2 37,461 - MPMX19_05361 0.70 -1.1 37,461 - MPMX19_05361 0.70 -1.5 37,461 - MPMX19_05361 0.70 -0.6 37,461 - MPMX19_05361 0.70 -0.9 37,471 + MPMX19_05361 0.72 +1.3 37,471 + MPMX19_05361 0.72 -0.7 37,471 + MPMX19_05361 0.72 -0.3 37,471 + MPMX19_05361 0.72 -2.0 37,472 - MPMX19_05361 0.72 -0.1 37,472 - MPMX19_05361 0.72 -1.1 37,472 - MPMX19_05361 0.72 -1.5 37,472 - MPMX19_05361 0.72 -0.5 37,472 - MPMX19_05361 0.72 -0.6 37,595 + MPMX19_05361 0.89 +0.1 37,595 + MPMX19_05361 0.89 -2.4 37,595 + MPMX19_05361 0.89 -0.4 37,595 + MPMX19_05361 0.89 -0.5 37,595 + MPMX19_05361 0.89 -0.3 37,595 + MPMX19_05361 0.89 -1.2 37,595 + MPMX19_05361 0.89 +1.1 37,595 + MPMX19_05361 0.89 -0.9 37,596 - MPMX19_05361 0.89 -0.4 37,596 - MPMX19_05361 0.89 -0.6 37,596 - MPMX19_05361 0.89 -1.0 37,596 - MPMX19_05361 0.89 +0.6 37,596 - MPMX19_05361 0.89 +0.2 37,609 + -0.2 37,609 + +0.4 37,610 - -1.4 37,610 - -0.5 37,670 + -0.0 37,683 + -0.8 37,683 + +0.3 37,683 + -0.8 37,683 + +1.0 37,683 + -0.4 37,683 + -0.4 37,683 + -0.4 37,683 + -0.6 37,683 + -2.1 37,684 - -1.0 37,684 - +0.2 37,684 - -0.1 37,684 - -0.2 37,691 + -0.7 37,691 + -1.2 37,691 + +0.3 37,692 - +1.8 37,692 - +0.8 37,728 + +0.0 37,728 + +1.6 37,728 + +1.8 37,728 + -0.5 37,728 + +0.4 37,728 + -0.4 37,728 + +1.6 37,728 + -0.2 37,729 - -1.5 37,729 - -1.4 37,729 - -1.7 37,729 - -1.4 37,821 + MPMX19_05362 0.11 -1.8 37,822 - MPMX19_05362 0.11 -2.0 37,897 + MPMX19_05362 0.31 +0.1 37,897 + MPMX19_05362 0.31 +0.8 37,935 + MPMX19_05362 0.41 +1.0 37,935 + MPMX19_05362 0.41 +0.2 37,935 + MPMX19_05362 0.41 +0.8 37,936 - MPMX19_05362 0.41 -0.3 38,243 - -0.5 38,304 + +2.1 38,304 + -2.0 38,344 + -2.2 38,344 + -1.5 38,344 + +0.2 38,345 - -1.3 38,345 - -1.0 38,345 - -0.5 38,345 - -0.4 38,372 - -0.3 38,372 - -2.2 38,689 + MPMX19_05363 0.40 -2.2 38,689 + MPMX19_05363 0.40 -1.0 38,689 + MPMX19_05363 0.40 -0.2 38,689 + MPMX19_05363 0.40 -0.9 38,689 + MPMX19_05363 0.40 -0.7 38,689 + MPMX19_05363 0.40 +0.6 38,689 + MPMX19_05363 0.40 -1.0 38,689 + MPMX19_05363 0.40 -0.7 38,689 + MPMX19_05363 0.40 +0.1 38,689 + MPMX19_05363 0.40 -1.7 38,689 + MPMX19_05363 0.40 +0.8 38,689 + MPMX19_05363 0.40 -0.9 38,689 + MPMX19_05363 0.40 +0.5 38,690 - MPMX19_05363 0.41 -0.7 38,690 - MPMX19_05363 0.41 -2.1 38,690 - MPMX19_05363 0.41 -0.9 38,690 - MPMX19_05363 0.41 -0.3 38,690 - MPMX19_05363 0.41 -0.3 38,690 - MPMX19_05363 0.41 -0.6 38,690 - MPMX19_05363 0.41 +0.2 38,690 - MPMX19_05363 0.41 -0.5 38,690 - MPMX19_05363 0.41 -0.9 38,690 - MPMX19_05363 0.41 -2.1 38,690 - MPMX19_05363 0.41 -0.1 38,789 + MPMX19_05363 0.53 -0.8 38,789 + MPMX19_05363 0.53 +1.1 38,911 + MPMX19_05363 0.69 +0.8 38,911 + MPMX19_05363 0.69 -2.2 38,912 - MPMX19_05363 0.69 -0.5 38,912 - MPMX19_05363 0.69 -1.1 38,912 - MPMX19_05363 0.69 +0.4 38,912 - MPMX19_05363 0.69 -0.3 38,912 - MPMX19_05363 0.69 -0.3 38,912 - MPMX19_05363 0.69 -1.7 38,912 - MPMX19_05363 0.69 +0.2 38,912 - MPMX19_05363 0.69 -0.7 39,031 + MPMX19_05363 0.84 -1.5 39,031 + MPMX19_05363 0.84 -0.8 39,031 + MPMX19_05363 0.84 -0.8 39,031 + MPMX19_05363 0.84 +0.0 39,032 - MPMX19_05363 0.84 -1.2 39,032 - MPMX19_05363 0.84 -2.1 39,166 + -0.4 39,166 + -0.8 39,718 + MPMX19_05364 0.85 -0.2 39,718 + MPMX19_05364 0.85 -0.1 39,718 + MPMX19_05364 0.85 -0.2 39,718 + MPMX19_05364 0.85 -0.3 39,718 + MPMX19_05364 0.85 +0.2 39,718 + MPMX19_05364 0.85 -1.7 39,718 + MPMX19_05364 0.85 +0.1 39,718 + MPMX19_05364 0.85 +0.3 39,718 + MPMX19_05364 0.85 -0.2 39,718 + MPMX19_05364 0.85 -0.0 39,719 - MPMX19_05364 0.85 +0.1 39,719 - MPMX19_05364 0.85 -0.0 39,719 - MPMX19_05364 0.85 -1.4 39,719 - MPMX19_05364 0.85 -0.0 39,719 - MPMX19_05364 0.85 +1.6 39,719 - MPMX19_05364 0.85 -0.3 39,827 - -0.6 39,861 + -1.7 39,861 + +0.1 39,861 + +0.7 39,861 + -0.0 39,861 + -1.4 39,861 + +0.0 39,861 + -1.2 39,861 + +1.6 39,861 + +0.5 39,862 - -0.8 39,862 - -1.8 39,862 - -0.6 39,862 - -0.8 39,862 - -1.1 39,862 - -1.9 39,862 - -0.3 39,862 - -0.2 39,862 - -2.1 39,862 - -2.2 39,862 - -0.7 39,862 - -0.9 39,862 - -0.3 39,862 - -1.9 39,862 - -0.2 39,996 + MPMX19_05365 0.24 +0.9 39,996 + MPMX19_05365 0.24 -0.7 39,996 + MPMX19_05365 0.24 -1.1 39,996 + MPMX19_05365 0.24 +1.1 39,997 - MPMX19_05365 0.24 -1.1 39,997 - MPMX19_05365 0.24 -0.5 39,997 - MPMX19_05365 0.24 -0.5 39,997 - MPMX19_05365 0.24 -2.5 40,011 + MPMX19_05365 0.27 +0.4 40,012 - MPMX19_05365 0.27 +0.6 40,012 - MPMX19_05365 0.27 -1.0 40,074 + MPMX19_05365 0.36 +0.0 40,074 + MPMX19_05365 0.36 -0.7 40,074 + MPMX19_05365 0.36 +0.6 40,074 + MPMX19_05365 0.36 -0.2 40,074 + MPMX19_05365 0.36 -0.2 40,074 + MPMX19_05365 0.36 +0.6 40,074 + MPMX19_05365 0.36 +0.2 40,074 + MPMX19_05365 0.36 +0.3 40,074 + MPMX19_05365 0.36 -0.8 40,074 + MPMX19_05365 0.36 +0.2 40,074 + MPMX19_05365 0.36 +1.8 40,074 + MPMX19_05365 0.36 -1.5 40,075 - MPMX19_05365 0.36 +0.1 40,075 - MPMX19_05365 0.36 +1.0 40,075 - MPMX19_05365 0.36 -0.9 40,075 - MPMX19_05365 0.36 -0.8 40,075 - MPMX19_05365 0.36 +1.3 40,075 - MPMX19_05365 0.36 -1.5 40,075 - MPMX19_05365 0.36 -0.4 40,075 - MPMX19_05365 0.36 -0.2 40,075 - MPMX19_05365 0.36 +0.7 40,075 - MPMX19_05365 0.36 -0.7 40,075 - MPMX19_05365 0.36 -0.6
Or see this region's nucleotide sequence