Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05327 and MPMX19_05328 are separated by 15 nucleotides MPMX19_05328 and MPMX19_05329 are separated by 157 nucleotides
MPMX19_05327: MPMX19_05327 - HTH-type transcriptional regulator PgrR, at 868,402 to 869,301
_05327
MPMX19_05328: MPMX19_05328 - hypothetical protein, at 869,317 to 869,634
_05328
MPMX19_05329: MPMX19_05329 - PTS system fructose-specific EIIB'BC component, at 869,792 to 871,564
_05329
Position (kb)
869
870 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 868.351 kb on + strand at 868.364 kb on + strand at 868.549 kb on + strand, within MPMX19_05327 at 868.550 kb on - strand, within MPMX19_05327 at 868.550 kb on - strand, within MPMX19_05327 at 868.550 kb on - strand, within MPMX19_05327 at 868.717 kb on + strand, within MPMX19_05327 at 868.718 kb on - strand, within MPMX19_05327 at 868.718 kb on - strand, within MPMX19_05327 at 868.829 kb on - strand, within MPMX19_05327 at 868.924 kb on + strand, within MPMX19_05327 at 868.924 kb on + strand, within MPMX19_05327 at 868.925 kb on - strand, within MPMX19_05327 at 868.925 kb on - strand, within MPMX19_05327 at 868.925 kb on - strand, within MPMX19_05327 at 868.925 kb on - strand, within MPMX19_05327 at 869.125 kb on + strand, within MPMX19_05327 at 869.125 kb on + strand, within MPMX19_05327 at 869.125 kb on + strand, within MPMX19_05327 at 869.126 kb on - strand, within MPMX19_05327 at 869.126 kb on - strand, within MPMX19_05327 at 869.126 kb on - strand, within MPMX19_05327 at 869.126 kb on - strand, within MPMX19_05327 at 869.126 kb on - strand, within MPMX19_05327 at 869.126 kb on - strand, within MPMX19_05327 at 869.128 kb on + strand, within MPMX19_05327 at 869.128 kb on + strand, within MPMX19_05327 at 869.128 kb on + strand, within MPMX19_05327 at 869.128 kb on + strand, within MPMX19_05327 at 869.128 kb on + strand, within MPMX19_05327 at 869.128 kb on + strand, within MPMX19_05327 at 869.129 kb on - strand, within MPMX19_05327 at 869.129 kb on - strand, within MPMX19_05327 at 869.129 kb on - strand, within MPMX19_05327 at 869.129 kb on - strand, within MPMX19_05327 at 869.129 kb on - strand, within MPMX19_05327 at 869.129 kb on - strand, within MPMX19_05327 at 869.129 kb on - strand, within MPMX19_05327 at 869.213 kb on - strand at 869.213 kb on - strand at 869.293 kb on + strand at 869.293 kb on + strand at 869.293 kb on + strand at 869.294 kb on - strand at 869.294 kb on - strand at 869.294 kb on - strand at 869.336 kb on + strand at 869.336 kb on + strand at 869.336 kb on + strand at 869.337 kb on - strand at 869.337 kb on - strand at 869.388 kb on + strand, within MPMX19_05328 at 869.388 kb on + strand, within MPMX19_05328 at 869.388 kb on + strand, within MPMX19_05328 at 869.389 kb on - strand, within MPMX19_05328 at 869.389 kb on - strand, within MPMX19_05328 at 869.389 kb on - strand, within MPMX19_05328 at 869.389 kb on - strand, within MPMX19_05328 at 869.710 kb on - strand at 869.710 kb on - strand at 869.710 kb on - strand at 869.710 kb on - strand at 869.713 kb on + strand at 869.713 kb on + strand at 869.713 kb on + strand at 869.713 kb on + strand at 869.714 kb on - strand at 869.714 kb on - strand at 869.714 kb on - strand at 869.714 kb on - strand at 869.714 kb on - strand at 869.714 kb on - strand at 869.714 kb on - strand at 869.714 kb on - strand at 869.714 kb on - strand at 869.714 kb on - strand at 869.916 kb on + strand at 869.916 kb on + strand at 869.917 kb on - strand at 869.917 kb on - strand at 869.917 kb on - strand at 870.234 kb on + strand, within MPMX19_05329 at 870.235 kb on - strand, within MPMX19_05329 at 870.235 kb on - strand, within MPMX19_05329 at 870.235 kb on - strand, within MPMX19_05329 at 870.235 kb on - strand, within MPMX19_05329 at 870.235 kb on - strand, within MPMX19_05329 at 870.235 kb on - strand, within MPMX19_05329 at 870.235 kb on - strand, within MPMX19_05329 at 870.270 kb on + strand, within MPMX19_05329 at 870.270 kb on + strand, within MPMX19_05329 at 870.270 kb on + strand, within MPMX19_05329 at 870.270 kb on + strand, within MPMX19_05329 at 870.270 kb on + strand, within MPMX19_05329 at 870.271 kb on - strand, within MPMX19_05329 at 870.271 kb on - strand, within MPMX19_05329 at 870.271 kb on - strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.417 kb on + strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329 at 870.418 kb on - strand, within MPMX19_05329
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 868,351 + -1.6 868,364 + -0.2 868,549 + MPMX19_05327 0.16 -1.1 868,550 - MPMX19_05327 0.16 +1.7 868,550 - MPMX19_05327 0.16 -0.5 868,550 - MPMX19_05327 0.16 +0.7 868,717 + MPMX19_05327 0.35 -1.5 868,718 - MPMX19_05327 0.35 -1.2 868,718 - MPMX19_05327 0.35 -0.9 868,829 - MPMX19_05327 0.47 +0.1 868,924 + MPMX19_05327 0.58 -0.1 868,924 + MPMX19_05327 0.58 +0.9 868,925 - MPMX19_05327 0.58 +0.9 868,925 - MPMX19_05327 0.58 +0.1 868,925 - MPMX19_05327 0.58 -0.3 868,925 - MPMX19_05327 0.58 +0.0 869,125 + MPMX19_05327 0.80 -0.9 869,125 + MPMX19_05327 0.80 -0.9 869,125 + MPMX19_05327 0.80 +1.1 869,126 - MPMX19_05327 0.80 +0.3 869,126 - MPMX19_05327 0.80 +0.0 869,126 - MPMX19_05327 0.80 -1.1 869,126 - MPMX19_05327 0.80 +0.3 869,126 - MPMX19_05327 0.80 +0.1 869,126 - MPMX19_05327 0.80 -1.7 869,128 + MPMX19_05327 0.81 +1.5 869,128 + MPMX19_05327 0.81 -2.5 869,128 + MPMX19_05327 0.81 +2.3 869,128 + MPMX19_05327 0.81 -0.1 869,128 + MPMX19_05327 0.81 -0.4 869,128 + MPMX19_05327 0.81 +0.4 869,129 - MPMX19_05327 0.81 -0.1 869,129 - MPMX19_05327 0.81 -0.1 869,129 - MPMX19_05327 0.81 -1.6 869,129 - MPMX19_05327 0.81 +0.8 869,129 - MPMX19_05327 0.81 -1.2 869,129 - MPMX19_05327 0.81 +0.0 869,129 - MPMX19_05327 0.81 -1.5 869,213 - -0.0 869,213 - -0.1 869,293 + -1.7 869,293 + -0.3 869,293 + -0.5 869,294 - -1.1 869,294 - +1.0 869,294 - +0.7 869,336 + +0.0 869,336 + -0.3 869,336 + +1.7 869,337 - +1.0 869,337 - -1.9 869,388 + MPMX19_05328 0.22 +0.6 869,388 + MPMX19_05328 0.22 +0.1 869,388 + MPMX19_05328 0.22 -1.2 869,389 - MPMX19_05328 0.23 +0.1 869,389 - MPMX19_05328 0.23 +0.2 869,389 - MPMX19_05328 0.23 -1.1 869,389 - MPMX19_05328 0.23 +1.0 869,710 - +0.1 869,710 - +1.7 869,710 - +0.1 869,710 - -1.2 869,713 + -1.7 869,713 + -0.6 869,713 + -0.8 869,713 + +0.2 869,714 - +0.6 869,714 - -1.6 869,714 - -0.3 869,714 - +0.0 869,714 - +2.1 869,714 - -0.7 869,714 - +0.3 869,714 - -0.1 869,714 - -0.9 869,714 - -0.6 869,916 + -1.1 869,916 + +1.1 869,917 - -0.1 869,917 - -2.9 869,917 - -0.9 870,234 + MPMX19_05329 0.25 -0.3 870,235 - MPMX19_05329 0.25 -0.3 870,235 - MPMX19_05329 0.25 +0.8 870,235 - MPMX19_05329 0.25 +0.6 870,235 - MPMX19_05329 0.25 -0.6 870,235 - MPMX19_05329 0.25 -0.4 870,235 - MPMX19_05329 0.25 -0.1 870,235 - MPMX19_05329 0.25 -0.5 870,270 + MPMX19_05329 0.27 -0.4 870,270 + MPMX19_05329 0.27 +0.7 870,270 + MPMX19_05329 0.27 -0.1 870,270 + MPMX19_05329 0.27 +0.7 870,270 + MPMX19_05329 0.27 +0.3 870,271 - MPMX19_05329 0.27 +0.4 870,271 - MPMX19_05329 0.27 -0.5 870,271 - MPMX19_05329 0.27 +0.2 870,417 + MPMX19_05329 0.35 -0.7 870,417 + MPMX19_05329 0.35 +0.0 870,417 + MPMX19_05329 0.35 +0.9 870,417 + MPMX19_05329 0.35 +0.7 870,417 + MPMX19_05329 0.35 -0.2 870,417 + MPMX19_05329 0.35 +0.7 870,417 + MPMX19_05329 0.35 -1.0 870,417 + MPMX19_05329 0.35 -2.5 870,417 + MPMX19_05329 0.35 +0.1 870,417 + MPMX19_05329 0.35 -1.6 870,417 + MPMX19_05329 0.35 +0.1 870,417 + MPMX19_05329 0.35 -1.5 870,417 + MPMX19_05329 0.35 +0.4 870,417 + MPMX19_05329 0.35 -1.6 870,418 - MPMX19_05329 0.35 -2.1 870,418 - MPMX19_05329 0.35 -1.4 870,418 - MPMX19_05329 0.35 -0.1 870,418 - MPMX19_05329 0.35 +0.2 870,418 - MPMX19_05329 0.35 -0.3 870,418 - MPMX19_05329 0.35 -0.2 870,418 - MPMX19_05329 0.35 +0.1 870,418 - MPMX19_05329 0.35 -0.8 870,418 - MPMX19_05329 0.35 -0.3 870,418 - MPMX19_05329 0.35 -0.5 870,418 - MPMX19_05329 0.35 +0.7 870,418 - MPMX19_05329 0.35 -1.7 870,418 - MPMX19_05329 0.35 +1.7 870,418 - MPMX19_05329 0.35 +0.3 870,418 - MPMX19_05329 0.35 -1.1 870,418 - MPMX19_05329 0.35 -0.0 870,418 - MPMX19_05329 0.35 -0.4 870,418 - MPMX19_05329 0.35 -0.3 870,418 - MPMX19_05329 0.35 +0.0
Or see this region's nucleotide sequence