Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05295 and MPMX19_05296 are separated by 19 nucleotides MPMX19_05296 and MPMX19_05297 are separated by 213 nucleotides MPMX19_05297 and MPMX19_05298 are separated by 599 nucleotides
MPMX19_05295: MPMX19_05295 - hypothetical protein, at 829,552 to 829,863
_05295
MPMX19_05296: MPMX19_05296 - Hydrogenase 1 maturation protease, at 829,883 to 830,533
_05296
MPMX19_05297: MPMX19_05297 - hypothetical protein, at 830,747 to 832,042
_05297
MPMX19_05298: MPMX19_05298 - Periplasmic [NiFeSe] hydrogenase large subunit, at 832,642 to 833,943
_05298
Position (kb) 830
831
832
833 Strain fitness (log2 ratio) -2
-1
0
1
2 at 829.968 kb on + strand, within MPMX19_05296 at 829.968 kb on + strand, within MPMX19_05296 at 829.968 kb on + strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 830.118 kb on + strand, within MPMX19_05296 at 830.118 kb on + strand, within MPMX19_05296 at 830.118 kb on + strand, within MPMX19_05296 at 830.119 kb on - strand, within MPMX19_05296 at 830.119 kb on - strand, within MPMX19_05296 at 830.180 kb on + strand, within MPMX19_05296 at 830.180 kb on + strand, within MPMX19_05296 at 830.180 kb on + strand, within MPMX19_05296 at 830.181 kb on - strand, within MPMX19_05296 at 830.181 kb on - strand, within MPMX19_05296 at 830.181 kb on - strand, within MPMX19_05296 at 830.181 kb on - strand, within MPMX19_05296 at 830.301 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.589 kb on + strand at 830.589 kb on + strand at 830.589 kb on + strand at 830.589 kb on + strand at 830.589 kb on + strand at 830.590 kb on - strand at 830.642 kb on + strand at 830.643 kb on - strand at 830.667 kb on - strand at 830.667 kb on - strand at 830.692 kb on - strand at 830.692 kb on - strand at 830.692 kb on - strand at 830.727 kb on + strand at 830.727 kb on + strand at 830.728 kb on - strand at 830.728 kb on - strand at 830.809 kb on + strand at 830.809 kb on + strand at 830.809 kb on + strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.956 kb on + strand, within MPMX19_05297 at 830.956 kb on + strand, within MPMX19_05297 at 830.957 kb on - strand, within MPMX19_05297 at 830.957 kb on - strand, within MPMX19_05297 at 830.957 kb on - strand, within MPMX19_05297 at 830.957 kb on - strand, within MPMX19_05297 at 830.957 kb on - strand, within MPMX19_05297 at 831.068 kb on + strand, within MPMX19_05297 at 831.068 kb on + strand, within MPMX19_05297 at 831.069 kb on - strand, within MPMX19_05297 at 831.069 kb on - strand, within MPMX19_05297 at 831.090 kb on + strand, within MPMX19_05297 at 831.090 kb on + strand, within MPMX19_05297 at 831.090 kb on + strand, within MPMX19_05297 at 831.091 kb on - strand, within MPMX19_05297 at 831.091 kb on - strand, within MPMX19_05297 at 831.129 kb on + strand, within MPMX19_05297 at 831.129 kb on + strand, within MPMX19_05297 at 831.130 kb on - strand, within MPMX19_05297 at 831.130 kb on - strand, within MPMX19_05297 at 831.130 kb on - strand, within MPMX19_05297 at 831.130 kb on - strand, within MPMX19_05297 at 831.155 kb on + strand, within MPMX19_05297 at 831.155 kb on + strand, within MPMX19_05297 at 831.156 kb on - strand, within MPMX19_05297 at 831.176 kb on + strand, within MPMX19_05297 at 831.176 kb on + strand, within MPMX19_05297 at 831.177 kb on - strand, within MPMX19_05297 at 831.177 kb on - strand, within MPMX19_05297 at 831.177 kb on - strand, within MPMX19_05297 at 831.177 kb on - strand, within MPMX19_05297 at 831.177 kb on - strand, within MPMX19_05297 at 831.177 kb on - strand, within MPMX19_05297 at 831.213 kb on + strand, within MPMX19_05297 at 831.213 kb on + strand, within MPMX19_05297 at 831.273 kb on + strand, within MPMX19_05297 at 831.274 kb on - strand, within MPMX19_05297 at 831.274 kb on - strand, within MPMX19_05297 at 831.274 kb on - strand, within MPMX19_05297 at 831.274 kb on - strand, within MPMX19_05297 at 831.291 kb on + strand, within MPMX19_05297 at 831.292 kb on - strand, within MPMX19_05297 at 831.304 kb on - strand, within MPMX19_05297 at 831.304 kb on - strand, within MPMX19_05297 at 831.351 kb on + strand, within MPMX19_05297 at 831.351 kb on + strand, within MPMX19_05297 at 831.351 kb on + strand, within MPMX19_05297 at 831.351 kb on + strand, within MPMX19_05297 at 831.351 kb on + strand, within MPMX19_05297 at 831.352 kb on - strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.426 kb on + strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.427 kb on - strand, within MPMX19_05297 at 831.662 kb on + strand, within MPMX19_05297 at 831.662 kb on + strand, within MPMX19_05297 at 831.662 kb on + strand, within MPMX19_05297 at 831.662 kb on + strand, within MPMX19_05297 at 831.663 kb on - strand, within MPMX19_05297 at 831.771 kb on + strand, within MPMX19_05297 at 831.771 kb on + strand, within MPMX19_05297 at 831.771 kb on + strand, within MPMX19_05297 at 831.771 kb on + strand, within MPMX19_05297 at 831.771 kb on + strand, within MPMX19_05297 at 831.772 kb on - strand, within MPMX19_05297 at 831.772 kb on - strand, within MPMX19_05297 at 831.772 kb on - strand, within MPMX19_05297 at 831.772 kb on - strand, within MPMX19_05297 at 831.772 kb on - strand, within MPMX19_05297 at 831.772 kb on - strand, within MPMX19_05297 at 831.772 kb on - strand, within MPMX19_05297 at 831.772 kb on - strand, within MPMX19_05297 at 831.846 kb on + strand, within MPMX19_05297 at 831.846 kb on + strand, within MPMX19_05297 at 831.847 kb on - strand, within MPMX19_05297 at 831.847 kb on - strand, within MPMX19_05297 at 831.847 kb on - strand, within MPMX19_05297 at 831.847 kb on - strand, within MPMX19_05297 at 832.128 kb on + strand at 832.197 kb on + strand at 832.210 kb on + strand at 832.210 kb on + strand at 832.211 kb on - strand at 832.211 kb on - strand at 832.211 kb on - strand at 832.251 kb on + strand at 832.344 kb on + strand at 832.345 kb on - strand at 832.442 kb on + strand at 832.443 kb on - strand at 832.463 kb on + strand at 832.463 kb on + strand at 832.463 kb on + strand at 832.463 kb on + strand at 832.463 kb on + strand at 832.463 kb on + strand at 832.463 kb on + strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.464 kb on - strand at 832.549 kb on - strand at 832.549 kb on - strand at 832.549 kb on - strand at 832.657 kb on + strand at 832.657 kb on + strand at 832.657 kb on + strand at 832.657 kb on + strand at 832.657 kb on + strand at 832.658 kb on - strand at 832.723 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 829,968 + MPMX19_05296 0.13 +0.9 829,968 + MPMX19_05296 0.13 +0.3 829,968 + MPMX19_05296 0.13 -0.3 829,969 - MPMX19_05296 0.13 -1.8 829,969 - MPMX19_05296 0.13 -1.3 829,969 - MPMX19_05296 0.13 -0.1 829,969 - MPMX19_05296 0.13 -0.6 829,969 - MPMX19_05296 0.13 -0.8 830,118 + MPMX19_05296 0.36 -0.1 830,118 + MPMX19_05296 0.36 -1.1 830,118 + MPMX19_05296 0.36 -0.1 830,119 - MPMX19_05296 0.36 -0.5 830,119 - MPMX19_05296 0.36 +0.6 830,180 + MPMX19_05296 0.46 +0.7 830,180 + MPMX19_05296 0.46 +0.4 830,180 + MPMX19_05296 0.46 -2.2 830,181 - MPMX19_05296 0.46 +0.1 830,181 - MPMX19_05296 0.46 -1.4 830,181 - MPMX19_05296 0.46 -1.7 830,181 - MPMX19_05296 0.46 -0.8 830,301 + MPMX19_05296 0.64 +0.1 830,358 + MPMX19_05296 0.73 +0.1 830,358 + MPMX19_05296 0.73 +0.9 830,358 + MPMX19_05296 0.73 +0.4 830,358 + MPMX19_05296 0.73 -0.1 830,358 + MPMX19_05296 0.73 -0.2 830,358 + MPMX19_05296 0.73 -1.3 830,359 - MPMX19_05296 0.73 -1.2 830,359 - MPMX19_05296 0.73 -1.6 830,359 - MPMX19_05296 0.73 -0.7 830,359 - MPMX19_05296 0.73 -0.8 830,359 - MPMX19_05296 0.73 -1.2 830,359 - MPMX19_05296 0.73 +0.5 830,359 - MPMX19_05296 0.73 -0.9 830,359 - MPMX19_05296 0.73 -0.0 830,589 + -0.7 830,589 + -0.4 830,589 + -0.6 830,589 + +0.1 830,589 + -0.5 830,590 - -0.1 830,642 + +1.4 830,643 - -0.6 830,667 - +0.3 830,667 - -0.8 830,692 - +0.5 830,692 - -0.3 830,692 - -0.1 830,727 + +0.4 830,727 + +0.3 830,728 - +0.9 830,728 - -0.1 830,809 + -0.0 830,809 + +0.7 830,809 + +0.5 830,810 - -0.3 830,810 - +0.1 830,810 - -0.9 830,810 - -0.6 830,810 - +0.2 830,810 - -2.7 830,856 + +1.0 830,856 + -0.7 830,856 + -0.6 830,856 + -0.3 830,856 + -0.0 830,856 + +0.8 830,856 + -0.6 830,856 + +2.4 830,856 + -0.5 830,856 + -1.1 830,857 - -0.5 830,857 - -0.0 830,857 - -1.3 830,857 - -2.6 830,857 - -2.7 830,857 - -0.0 830,857 - -0.9 830,956 + MPMX19_05297 0.16 -0.3 830,956 + MPMX19_05297 0.16 +0.1 830,957 - MPMX19_05297 0.16 +0.1 830,957 - MPMX19_05297 0.16 +0.3 830,957 - MPMX19_05297 0.16 -0.0 830,957 - MPMX19_05297 0.16 -0.0 830,957 - MPMX19_05297 0.16 -0.3 831,068 + MPMX19_05297 0.25 -0.9 831,068 + MPMX19_05297 0.25 -1.5 831,069 - MPMX19_05297 0.25 -1.0 831,069 - MPMX19_05297 0.25 -1.5 831,090 + MPMX19_05297 0.26 -1.6 831,090 + MPMX19_05297 0.26 -0.9 831,090 + MPMX19_05297 0.26 -1.5 831,091 - MPMX19_05297 0.27 -0.5 831,091 - MPMX19_05297 0.27 -0.9 831,129 + MPMX19_05297 0.29 -1.9 831,129 + MPMX19_05297 0.29 -0.9 831,130 - MPMX19_05297 0.30 -1.5 831,130 - MPMX19_05297 0.30 +0.7 831,130 - MPMX19_05297 0.30 -0.6 831,130 - MPMX19_05297 0.30 -0.2 831,155 + MPMX19_05297 0.31 -0.3 831,155 + MPMX19_05297 0.31 -0.9 831,156 - MPMX19_05297 0.32 -0.8 831,176 + MPMX19_05297 0.33 -0.4 831,176 + MPMX19_05297 0.33 +1.4 831,177 - MPMX19_05297 0.33 -0.5 831,177 - MPMX19_05297 0.33 -1.1 831,177 - MPMX19_05297 0.33 -1.5 831,177 - MPMX19_05297 0.33 +2.3 831,177 - MPMX19_05297 0.33 -0.6 831,177 - MPMX19_05297 0.33 +0.9 831,213 + MPMX19_05297 0.36 -0.6 831,213 + MPMX19_05297 0.36 +1.3 831,273 + MPMX19_05297 0.41 -0.0 831,274 - MPMX19_05297 0.41 -0.8 831,274 - MPMX19_05297 0.41 -0.5 831,274 - MPMX19_05297 0.41 -1.1 831,274 - MPMX19_05297 0.41 -1.3 831,291 + MPMX19_05297 0.42 -2.5 831,292 - MPMX19_05297 0.42 +0.9 831,304 - MPMX19_05297 0.43 -0.9 831,304 - MPMX19_05297 0.43 -0.6 831,351 + MPMX19_05297 0.47 -0.5 831,351 + MPMX19_05297 0.47 +0.5 831,351 + MPMX19_05297 0.47 -1.3 831,351 + MPMX19_05297 0.47 +0.3 831,351 + MPMX19_05297 0.47 -0.4 831,352 - MPMX19_05297 0.47 -1.4 831,426 + MPMX19_05297 0.52 -0.3 831,426 + MPMX19_05297 0.52 -0.7 831,426 + MPMX19_05297 0.52 -1.6 831,426 + MPMX19_05297 0.52 +0.7 831,426 + MPMX19_05297 0.52 -2.0 831,426 + MPMX19_05297 0.52 +0.3 831,426 + MPMX19_05297 0.52 -0.5 831,426 + MPMX19_05297 0.52 -0.2 831,426 + MPMX19_05297 0.52 +0.4 831,426 + MPMX19_05297 0.52 -0.9 831,426 + MPMX19_05297 0.52 -0.4 831,426 + MPMX19_05297 0.52 -0.1 831,426 + MPMX19_05297 0.52 -0.9 831,426 + MPMX19_05297 0.52 +1.0 831,426 + MPMX19_05297 0.52 -0.0 831,426 + MPMX19_05297 0.52 -0.9 831,426 + MPMX19_05297 0.52 -0.6 831,426 + MPMX19_05297 0.52 +0.3 831,426 + MPMX19_05297 0.52 -0.6 831,426 + MPMX19_05297 0.52 +1.4 831,426 + MPMX19_05297 0.52 -0.1 831,427 - MPMX19_05297 0.52 -2.2 831,427 - MPMX19_05297 0.52 +0.0 831,427 - MPMX19_05297 0.52 -2.0 831,427 - MPMX19_05297 0.52 -1.5 831,427 - MPMX19_05297 0.52 -1.3 831,427 - MPMX19_05297 0.52 -0.5 831,427 - MPMX19_05297 0.52 -1.5 831,427 - MPMX19_05297 0.52 -1.3 831,427 - MPMX19_05297 0.52 -1.1 831,427 - MPMX19_05297 0.52 -0.3 831,427 - MPMX19_05297 0.52 +0.9 831,427 - MPMX19_05297 0.52 -1.6 831,427 - MPMX19_05297 0.52 -0.2 831,427 - MPMX19_05297 0.52 -0.1 831,662 + MPMX19_05297 0.71 -1.6 831,662 + MPMX19_05297 0.71 -1.5 831,662 + MPMX19_05297 0.71 -0.1 831,662 + MPMX19_05297 0.71 -0.5 831,663 - MPMX19_05297 0.71 -0.9 831,771 + MPMX19_05297 0.79 -2.5 831,771 + MPMX19_05297 0.79 +0.9 831,771 + MPMX19_05297 0.79 +0.5 831,771 + MPMX19_05297 0.79 -1.1 831,771 + MPMX19_05297 0.79 -0.5 831,772 - MPMX19_05297 0.79 +0.1 831,772 - MPMX19_05297 0.79 +1.7 831,772 - MPMX19_05297 0.79 -0.0 831,772 - MPMX19_05297 0.79 -0.3 831,772 - MPMX19_05297 0.79 -0.3 831,772 - MPMX19_05297 0.79 +0.6 831,772 - MPMX19_05297 0.79 +0.8 831,772 - MPMX19_05297 0.79 +0.3 831,846 + MPMX19_05297 0.85 -0.3 831,846 + MPMX19_05297 0.85 +1.4 831,847 - MPMX19_05297 0.85 -0.0 831,847 - MPMX19_05297 0.85 -1.1 831,847 - MPMX19_05297 0.85 -1.6 831,847 - MPMX19_05297 0.85 +0.6 832,128 + -1.2 832,197 + -0.3 832,210 + +0.4 832,210 + -0.5 832,211 - +0.0 832,211 - -0.3 832,211 - +0.4 832,251 + -0.4 832,344 + -0.9 832,345 - -1.1 832,442 + -0.3 832,443 - +0.1 832,463 + -2.0 832,463 + -0.3 832,463 + +0.4 832,463 + -0.0 832,463 + -1.0 832,463 + -0.4 832,463 + -1.0 832,464 - -2.2 832,464 - +0.5 832,464 - -1.2 832,464 - -0.1 832,464 - -0.7 832,464 - -1.6 832,464 - -0.5 832,464 - -0.1 832,464 - -0.6 832,464 - -0.7 832,464 - +0.2 832,464 - +0.1 832,464 - -2.3 832,464 - -1.3 832,464 - -1.1 832,549 - -0.9 832,549 - -0.6 832,549 - -1.0 832,657 + -1.5 832,657 + +0.7 832,657 + +0.9 832,657 + -0.7 832,657 + +1.2 832,658 - -1.5 832,723 + -0.9
Or see this region's nucleotide sequence