Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05284

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05283 and MPMX19_05284 are separated by 335 nucleotidesMPMX19_05284 and MPMX19_05285 are separated by 146 nucleotides MPMX19_05283: MPMX19_05283 - C4-dicarboxylic acid transporter DauA, at 816,514 to 818,001 _05283 MPMX19_05284: MPMX19_05284 - hypothetical protein, at 818,337 to 818,597 _05284 MPMX19_05285: MPMX19_05285 - Carbamoyltransferase HypF, at 818,744 to 820,951 _05285 Position (kb) 818 819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.730 kb on + strand, within MPMX19_05283at 817.730 kb on + strand, within MPMX19_05283at 817.730 kb on + strand, within MPMX19_05283at 817.730 kb on + strand, within MPMX19_05283at 817.730 kb on + strand, within MPMX19_05283at 817.730 kb on + strand, within MPMX19_05283at 817.731 kb on - strand, within MPMX19_05283at 817.731 kb on - strand, within MPMX19_05283at 817.731 kb on - strand, within MPMX19_05283at 817.731 kb on - strand, within MPMX19_05283at 817.785 kb on + strand, within MPMX19_05283at 817.785 kb on + strand, within MPMX19_05283at 817.786 kb on - strand, within MPMX19_05283at 817.786 kb on - strand, within MPMX19_05283at 817.786 kb on - strand, within MPMX19_05283at 817.786 kb on - strand, within MPMX19_05283at 817.786 kb on - strand, within MPMX19_05283at 817.786 kb on - strand, within MPMX19_05283at 817.853 kb on + strandat 817.853 kb on + strandat 817.854 kb on - strandat 817.854 kb on - strandat 817.854 kb on - strandat 818.212 kb on + strandat 818.213 kb on - strandat 818.664 kb on + strandat 818.856 kb on + strandat 818.856 kb on + strandat 818.857 kb on - strandat 818.857 kb on - strandat 818.857 kb on - strandat 818.857 kb on - strandat 818.857 kb on - strandat 819.089 kb on + strand, within MPMX19_05285at 819.089 kb on + strand, within MPMX19_05285at 819.090 kb on - strand, within MPMX19_05285at 819.090 kb on - strand, within MPMX19_05285at 819.090 kb on - strand, within MPMX19_05285at 819.125 kb on + strand, within MPMX19_05285at 819.125 kb on + strand, within MPMX19_05285at 819.126 kb on - strand, within MPMX19_05285at 819.126 kb on - strand, within MPMX19_05285at 819.126 kb on - strand, within MPMX19_05285at 819.149 kb on + strand, within MPMX19_05285at 819.149 kb on + strand, within MPMX19_05285at 819.150 kb on - strand, within MPMX19_05285at 819.150 kb on - strand, within MPMX19_05285at 819.209 kb on + strand, within MPMX19_05285at 819.209 kb on + strand, within MPMX19_05285at 819.209 kb on + strand, within MPMX19_05285at 819.209 kb on + strand, within MPMX19_05285

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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817,520 + MPMX19_05283 0.68 -1.3
817,520 + MPMX19_05283 0.68 -1.1
817,520 + MPMX19_05283 0.68 -1.1
817,520 + MPMX19_05283 0.68 -0.3
817,520 + MPMX19_05283 0.68 -0.7
817,520 + MPMX19_05283 0.68 +1.1
817,520 + MPMX19_05283 0.68 -1.8
817,520 + MPMX19_05283 0.68 +0.1
817,520 + MPMX19_05283 0.68 -1.6
817,520 + MPMX19_05283 0.68 +2.4
817,520 + MPMX19_05283 0.68 +1.2
817,521 - MPMX19_05283 0.68 +1.5
817,521 - MPMX19_05283 0.68 +0.3
817,521 - MPMX19_05283 0.68 +0.7
817,521 - MPMX19_05283 0.68 -1.5
817,521 - MPMX19_05283 0.68 +0.7
817,521 - MPMX19_05283 0.68 +0.9
817,521 - MPMX19_05283 0.68 -2.0
817,521 - MPMX19_05283 0.68 +0.1
817,521 - MPMX19_05283 0.68 -0.4
817,521 - MPMX19_05283 0.68 -2.3
817,521 - MPMX19_05283 0.68 -0.3
817,521 - MPMX19_05283 0.68 +0.3
817,521 - MPMX19_05283 0.68 -0.4
817,521 - MPMX19_05283 0.68 +0.8
817,521 - MPMX19_05283 0.68 +0.6
817,521 - MPMX19_05283 0.68 +1.3
817,521 - MPMX19_05283 0.68 +1.7
817,521 - MPMX19_05283 0.68 -0.0
817,553 + MPMX19_05283 0.70 +1.3
817,553 + MPMX19_05283 0.70 -0.2
817,553 + MPMX19_05283 0.70 -0.4
817,553 + MPMX19_05283 0.70 -1.1
817,553 + MPMX19_05283 0.70 +0.9
817,553 + MPMX19_05283 0.70 +0.7
817,553 + MPMX19_05283 0.70 +1.9
817,553 + MPMX19_05283 0.70 +0.6
817,553 + MPMX19_05283 0.70 +0.2
817,553 + MPMX19_05283 0.70 -0.3
817,554 - MPMX19_05283 0.70 -2.2
817,554 - MPMX19_05283 0.70 -1.5
817,554 - MPMX19_05283 0.70 +0.3
817,554 - MPMX19_05283 0.70 -0.6
817,554 - MPMX19_05283 0.70 -2.5
817,554 - MPMX19_05283 0.70 -0.0
817,554 - MPMX19_05283 0.70 -0.0
817,554 - MPMX19_05283 0.70 +0.1
817,554 - MPMX19_05283 0.70 -0.7
817,554 - MPMX19_05283 0.70 -1.5
817,554 - MPMX19_05283 0.70 -1.0
817,554 - MPMX19_05283 0.70 -0.3
817,554 - MPMX19_05283 0.70 -0.6
817,730 + MPMX19_05283 0.82 -1.9
817,730 + MPMX19_05283 0.82 +0.4
817,730 + MPMX19_05283 0.82 -1.1
817,730 + MPMX19_05283 0.82 -0.8
817,730 + MPMX19_05283 0.82 -3.0
817,730 + MPMX19_05283 0.82 -0.1
817,731 - MPMX19_05283 0.82 -0.6
817,731 - MPMX19_05283 0.82 -0.8
817,731 - MPMX19_05283 0.82 +0.1
817,731 - MPMX19_05283 0.82 -0.4
817,785 + MPMX19_05283 0.85 +0.3
817,785 + MPMX19_05283 0.85 +0.1
817,786 - MPMX19_05283 0.85 -0.3
817,786 - MPMX19_05283 0.85 -1.1
817,786 - MPMX19_05283 0.85 +0.6
817,786 - MPMX19_05283 0.85 +0.4
817,786 - MPMX19_05283 0.85 -0.2
817,786 - MPMX19_05283 0.85 -0.6
817,853 + +0.3
817,853 + -1.0
817,854 - -0.9
817,854 - +0.6
817,854 - -2.7
818,212 + -1.0
818,213 - -1.6
818,664 + -0.2
818,856 + -0.6
818,856 + -2.0
818,857 - -1.5
818,857 - +0.3
818,857 - -0.2
818,857 - -0.7
818,857 - -1.7
819,089 + MPMX19_05285 0.16 +0.9
819,089 + MPMX19_05285 0.16 -0.9
819,090 - MPMX19_05285 0.16 -0.4
819,090 - MPMX19_05285 0.16 -0.6
819,090 - MPMX19_05285 0.16 -0.4
819,125 + MPMX19_05285 0.17 -1.3
819,125 + MPMX19_05285 0.17 -0.8
819,126 - MPMX19_05285 0.17 +0.1
819,126 - MPMX19_05285 0.17 -0.5
819,126 - MPMX19_05285 0.17 +0.3
819,149 + MPMX19_05285 0.18 -0.2
819,149 + MPMX19_05285 0.18 -0.9
819,150 - MPMX19_05285 0.18 -0.7
819,150 - MPMX19_05285 0.18 +0.4
819,209 + MPMX19_05285 0.21 +0.3
819,209 + MPMX19_05285 0.21 -0.2
819,209 + MPMX19_05285 0.21 +0.3
819,209 + MPMX19_05285 0.21 -0.5

Or see this region's nucleotide sequence