Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05264

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05263 and MPMX19_05264 are separated by 233 nucleotidesMPMX19_05264 and MPMX19_05265 are separated by 23 nucleotidesMPMX19_05265 and MPMX19_05266 are separated by 31 nucleotides MPMX19_05263: MPMX19_05263 - hypothetical protein, at 797,887 to 799,308 _05263 MPMX19_05264: MPMX19_05264 - hypothetical protein, at 799,542 to 800,015 _05264 MPMX19_05265: MPMX19_05265 - hypothetical protein, at 800,039 to 800,668 _05265 MPMX19_05266: MPMX19_05266 - Aspartate aminotransferase, at 800,700 to 801,872 _05266 Position (kb) 799 800 801Strain fitness (log2 ratio) -2 -1 0 1 2at 798.563 kb on + strand, within MPMX19_05263at 798.564 kb on - strand, within MPMX19_05263at 798.695 kb on + strand, within MPMX19_05263at 798.776 kb on + strand, within MPMX19_05263at 798.776 kb on + strand, within MPMX19_05263at 798.776 kb on + strand, within MPMX19_05263at 798.776 kb on + strand, within MPMX19_05263at 798.777 kb on - strand, within MPMX19_05263at 798.777 kb on - strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.887 kb on + strand, within MPMX19_05263at 798.887 kb on + strand, within MPMX19_05263at 798.887 kb on + strand, within MPMX19_05263at 798.887 kb on + strand, within MPMX19_05263at 798.887 kb on + strand, within MPMX19_05263at 798.888 kb on - strand, within MPMX19_05263at 798.888 kb on - strand, within MPMX19_05263at 798.888 kb on - strand, within MPMX19_05263at 798.888 kb on - strand, within MPMX19_05263at 798.888 kb on - strand, within MPMX19_05263at 799.315 kb on - strandat 799.330 kb on + strandat 799.330 kb on + strandat 799.330 kb on + strandat 799.330 kb on + strandat 799.330 kb on + strandat 799.330 kb on + strandat 799.382 kb on + strandat 799.382 kb on + strandat 799.383 kb on - strandat 799.478 kb on + strandat 799.478 kb on + strandat 799.479 kb on - strandat 799.647 kb on + strand, within MPMX19_05264at 799.647 kb on + strand, within MPMX19_05264at 799.647 kb on + strand, within MPMX19_05264at 799.648 kb on - strand, within MPMX19_05264at 799.648 kb on - strand, within MPMX19_05264at 799.648 kb on - strand, within MPMX19_05264at 799.648 kb on - strand, within MPMX19_05264at 799.648 kb on - strand, within MPMX19_05264at 799.648 kb on - strand, within MPMX19_05264at 799.679 kb on + strand, within MPMX19_05264at 799.679 kb on + strand, within MPMX19_05264at 799.679 kb on + strand, within MPMX19_05264at 799.680 kb on - strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 800.055 kb on + strandat 800.190 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.209 kb on - strand, within MPMX19_05265at 800.223 kb on + strand, within MPMX19_05265at 800.223 kb on + strand, within MPMX19_05265at 800.223 kb on + strand, within MPMX19_05265at 800.223 kb on + strand, within MPMX19_05265at 800.223 kb on + strand, within MPMX19_05265at 800.223 kb on + strand, within MPMX19_05265at 800.224 kb on - strand, within MPMX19_05265at 800.224 kb on - strand, within MPMX19_05265at 800.224 kb on - strand, within MPMX19_05265at 800.319 kb on + strand, within MPMX19_05265at 800.320 kb on - strand, within MPMX19_05265at 800.320 kb on - strand, within MPMX19_05265at 800.320 kb on - strand, within MPMX19_05265at 800.320 kb on - strand, within MPMX19_05265at 800.320 kb on - strand, within MPMX19_05265at 800.445 kb on + strand, within MPMX19_05265at 800.445 kb on + strand, within MPMX19_05265at 800.445 kb on + strand, within MPMX19_05265at 800.445 kb on + strand, within MPMX19_05265at 800.446 kb on - strand, within MPMX19_05265at 800.499 kb on + strand, within MPMX19_05265at 800.499 kb on + strand, within MPMX19_05265at 800.499 kb on + strand, within MPMX19_05265at 800.499 kb on + strand, within MPMX19_05265at 800.499 kb on + strand, within MPMX19_05265at 800.499 kb on + strand, within MPMX19_05265at 800.499 kb on + strand, within MPMX19_05265at 800.499 kb on + strand, within MPMX19_05265at 800.499 kb on + strand, within MPMX19_05265at 800.499 kb on + strand, within MPMX19_05265at 800.499 kb on + strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.500 kb on - strand, within MPMX19_05265at 800.556 kb on + strand, within MPMX19_05265at 800.556 kb on + strand, within MPMX19_05265at 800.556 kb on + strand, within MPMX19_05265at 800.556 kb on + strand, within MPMX19_05265at 800.557 kb on - strand, within MPMX19_05265at 800.557 kb on - strand, within MPMX19_05265at 800.616 kb on + strandat 800.616 kb on + strandat 800.616 kb on + strandat 800.617 kb on - strandat 800.617 kb on - strandat 800.617 kb on - strandat 800.617 kb on - strandat 800.617 kb on - strandat 800.617 kb on - strandat 800.617 kb on - strandat 800.788 kb on + strandat 800.788 kb on + strandat 800.788 kb on + strandat 800.788 kb on + strandat 800.788 kb on + strandat 800.788 kb on + strandat 800.788 kb on + strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strandat 800.789 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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798,563 + MPMX19_05263 0.48 -0.4
798,564 - MPMX19_05263 0.48 +0.6
798,695 + MPMX19_05263 0.57 +0.2
798,776 + MPMX19_05263 0.63 -0.6
798,776 + MPMX19_05263 0.63 -0.6
798,776 + MPMX19_05263 0.63 -0.6
798,776 + MPMX19_05263 0.63 -0.0
798,777 - MPMX19_05263 0.63 -0.0
798,777 - MPMX19_05263 0.63 -0.3
798,857 + MPMX19_05263 0.68 +1.4
798,857 + MPMX19_05263 0.68 +1.7
798,857 + MPMX19_05263 0.68 +1.1
798,857 + MPMX19_05263 0.68 -0.5
798,857 + MPMX19_05263 0.68 +1.3
798,857 + MPMX19_05263 0.68 -2.1
798,857 + MPMX19_05263 0.68 -0.3
798,857 + MPMX19_05263 0.68 -1.6
798,858 - MPMX19_05263 0.68 -0.2
798,858 - MPMX19_05263 0.68 -0.0
798,858 - MPMX19_05263 0.68 -0.2
798,858 - MPMX19_05263 0.68 -0.1
798,858 - MPMX19_05263 0.68 -0.9
798,858 - MPMX19_05263 0.68 -0.1
798,858 - MPMX19_05263 0.68 -0.3
798,858 - MPMX19_05263 0.68 -1.0
798,858 - MPMX19_05263 0.68 +0.7
798,858 - MPMX19_05263 0.68 +0.6
798,887 + MPMX19_05263 0.70 +0.5
798,887 + MPMX19_05263 0.70 -0.4
798,887 + MPMX19_05263 0.70 +2.1
798,887 + MPMX19_05263 0.70 +0.5
798,887 + MPMX19_05263 0.70 -0.9
798,888 - MPMX19_05263 0.70 -1.3
798,888 - MPMX19_05263 0.70 -0.9
798,888 - MPMX19_05263 0.70 -0.9
798,888 - MPMX19_05263 0.70 -1.1
798,888 - MPMX19_05263 0.70 -0.9
799,315 - +0.1
799,330 + -1.2
799,330 + +0.6
799,330 + -0.8
799,330 + +0.1
799,330 + -0.2
799,330 + -0.3
799,382 + -2.2
799,382 + -0.4
799,383 - -0.8
799,478 + -0.8
799,478 + -0.6
799,479 - -0.6
799,647 + MPMX19_05264 0.22 +0.2
799,647 + MPMX19_05264 0.22 +0.8
799,647 + MPMX19_05264 0.22 -0.3
799,648 - MPMX19_05264 0.22 +0.3
799,648 - MPMX19_05264 0.22 +0.6
799,648 - MPMX19_05264 0.22 +0.3
799,648 - MPMX19_05264 0.22 -1.6
799,648 - MPMX19_05264 0.22 +0.4
799,648 - MPMX19_05264 0.22 -0.6
799,679 + MPMX19_05264 0.29 -1.1
799,679 + MPMX19_05264 0.29 +0.3
799,679 + MPMX19_05264 0.29 -0.3
799,680 - MPMX19_05264 0.29 -0.3
799,899 + MPMX19_05264 0.75 +1.1
799,899 + MPMX19_05264 0.75 -0.4
799,899 + MPMX19_05264 0.75 -0.2
799,899 + MPMX19_05264 0.75 -0.1
799,899 + MPMX19_05264 0.75 +0.3
799,899 + MPMX19_05264 0.75 +0.5
799,899 + MPMX19_05264 0.75 +0.1
799,899 + MPMX19_05264 0.75 -0.3
799,899 + MPMX19_05264 0.75 +0.1
799,900 - MPMX19_05264 0.76 -0.7
799,900 - MPMX19_05264 0.76 -0.3
799,900 - MPMX19_05264 0.76 -0.5
799,900 - MPMX19_05264 0.76 -0.3
799,900 - MPMX19_05264 0.76 -0.5
799,900 - MPMX19_05264 0.76 +0.2
799,900 - MPMX19_05264 0.76 -1.0
799,900 - MPMX19_05264 0.76 -0.4
799,900 - MPMX19_05264 0.76 -0.4
799,900 - MPMX19_05264 0.76 +0.6
800,055 + -0.5
800,190 + MPMX19_05265 0.24 +0.6
800,208 + MPMX19_05265 0.27 -0.2
800,208 + MPMX19_05265 0.27 +0.6
800,208 + MPMX19_05265 0.27 -1.3
800,208 + MPMX19_05265 0.27 +1.7
800,208 + MPMX19_05265 0.27 +1.3
800,208 + MPMX19_05265 0.27 -0.4
800,208 + MPMX19_05265 0.27 +1.5
800,208 + MPMX19_05265 0.27 +0.1
800,208 + MPMX19_05265 0.27 +1.5
800,209 - MPMX19_05265 0.27 -0.7
800,223 + MPMX19_05265 0.29 -1.4
800,223 + MPMX19_05265 0.29 +0.8
800,223 + MPMX19_05265 0.29 +0.1
800,223 + MPMX19_05265 0.29 -0.7
800,223 + MPMX19_05265 0.29 -0.6
800,223 + MPMX19_05265 0.29 +0.3
800,224 - MPMX19_05265 0.29 -0.3
800,224 - MPMX19_05265 0.29 +0.7
800,224 - MPMX19_05265 0.29 -1.3
800,319 + MPMX19_05265 0.44 -1.9
800,320 - MPMX19_05265 0.45 -1.3
800,320 - MPMX19_05265 0.45 -1.1
800,320 - MPMX19_05265 0.45 -1.0
800,320 - MPMX19_05265 0.45 +0.8
800,320 - MPMX19_05265 0.45 -0.9
800,445 + MPMX19_05265 0.64 -0.1
800,445 + MPMX19_05265 0.64 +0.4
800,445 + MPMX19_05265 0.64 -0.9
800,445 + MPMX19_05265 0.64 -0.1
800,446 - MPMX19_05265 0.65 -1.5
800,499 + MPMX19_05265 0.73 -1.1
800,499 + MPMX19_05265 0.73 +0.6
800,499 + MPMX19_05265 0.73 -0.9
800,499 + MPMX19_05265 0.73 -0.3
800,499 + MPMX19_05265 0.73 -0.1
800,499 + MPMX19_05265 0.73 -1.7
800,499 + MPMX19_05265 0.73 -0.9
800,499 + MPMX19_05265 0.73 -0.3
800,499 + MPMX19_05265 0.73 +0.4
800,499 + MPMX19_05265 0.73 +0.7
800,499 + MPMX19_05265 0.73 +1.7
800,500 - MPMX19_05265 0.73 -0.4
800,500 - MPMX19_05265 0.73 -0.9
800,500 - MPMX19_05265 0.73 -1.7
800,500 - MPMX19_05265 0.73 +0.3
800,500 - MPMX19_05265 0.73 +0.6
800,500 - MPMX19_05265 0.73 -1.5
800,500 - MPMX19_05265 0.73 -0.3
800,500 - MPMX19_05265 0.73 -1.2
800,500 - MPMX19_05265 0.73 -0.6
800,500 - MPMX19_05265 0.73 -1.0
800,500 - MPMX19_05265 0.73 +0.8
800,500 - MPMX19_05265 0.73 -0.2
800,500 - MPMX19_05265 0.73 -0.2
800,500 - MPMX19_05265 0.73 -1.1
800,500 - MPMX19_05265 0.73 +0.5
800,500 - MPMX19_05265 0.73 -0.9
800,500 - MPMX19_05265 0.73 -0.3
800,556 + MPMX19_05265 0.82 -0.4
800,556 + MPMX19_05265 0.82 +0.1
800,556 + MPMX19_05265 0.82 -1.0
800,556 + MPMX19_05265 0.82 +0.6
800,557 - MPMX19_05265 0.82 +0.7
800,557 - MPMX19_05265 0.82 +0.7
800,616 + -0.4
800,616 + -1.1
800,616 + +0.1
800,617 - -0.3
800,617 - -1.5
800,617 - -0.4
800,617 - -1.1
800,617 - +0.0
800,617 - -0.3
800,617 - +0.3
800,788 + -0.6
800,788 + +0.7
800,788 + +0.3
800,788 + +0.4
800,788 + -1.7
800,788 + -1.7
800,788 + -1.3
800,789 - -0.6
800,789 - +0.5
800,789 - -0.2
800,789 - -0.1
800,789 - +1.0
800,789 - +0.6
800,789 - -0.9
800,789 - +0.4
800,789 - +0.1
800,789 - +0.4
800,789 - -0.9
800,789 - +0.2
800,789 - -0.6
800,789 - -1.5
800,789 - +0.7
800,789 - +1.7
800,789 - -1.6
800,789 - -0.3
800,789 - -1.5
800,789 - -0.6
800,789 - -0.9
800,789 - -0.8

Or see this region's nucleotide sequence