Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05224

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05223 and MPMX19_05224 are separated by 268 nucleotidesMPMX19_05224 and MPMX19_05225 are separated by 172 nucleotides MPMX19_05223: MPMX19_05223 - Basal-body rod modification protein FlgD, at 749,239 to 749,934 _05223 MPMX19_05224: MPMX19_05224 - hypothetical protein, at 750,203 to 750,712 _05224 MPMX19_05225: MPMX19_05225 - Fatty acid oxidation complex subunit alpha, at 750,885 to 753,008 _05225 Position (kb) 750 751Strain fitness (log2 ratio) -2 -1 0 1 2 3at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.415 kb on - strand, within MPMX19_05223at 749.415 kb on - strand, within MPMX19_05223at 749.415 kb on - strand, within MPMX19_05223at 749.415 kb on - strand, within MPMX19_05223at 749.415 kb on - strand, within MPMX19_05223at 749.492 kb on + strand, within MPMX19_05223at 749.492 kb on + strand, within MPMX19_05223at 749.492 kb on + strand, within MPMX19_05223at 749.492 kb on + strand, within MPMX19_05223at 749.493 kb on - strand, within MPMX19_05223at 749.493 kb on - strand, within MPMX19_05223at 749.493 kb on - strand, within MPMX19_05223at 749.558 kb on + strand, within MPMX19_05223at 749.558 kb on + strand, within MPMX19_05223at 749.558 kb on + strand, within MPMX19_05223at 749.559 kb on - strand, within MPMX19_05223at 749.559 kb on - strand, within MPMX19_05223at 749.559 kb on - strand, within MPMX19_05223at 749.559 kb on - strand, within MPMX19_05223at 749.619 kb on + strand, within MPMX19_05223at 749.619 kb on + strand, within MPMX19_05223at 749.619 kb on + strand, within MPMX19_05223at 749.619 kb on + strand, within MPMX19_05223at 749.620 kb on - strand, within MPMX19_05223at 749.620 kb on - strand, within MPMX19_05223at 749.624 kb on + strand, within MPMX19_05223at 749.625 kb on - strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.628 kb on - strand, within MPMX19_05223at 749.628 kb on - strand, within MPMX19_05223at 749.628 kb on - strand, within MPMX19_05223at 749.628 kb on - strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.844 kb on - strand, within MPMX19_05223at 749.844 kb on - strand, within MPMX19_05223at 750.113 kb on + strandat 750.113 kb on + strandat 750.113 kb on + strandat 750.114 kb on - strandat 750.114 kb on - strandat 750.114 kb on - strandat 750.114 kb on - strandat 750.114 kb on - strandat 750.114 kb on - strandat 750.345 kb on + strand, within MPMX19_05224at 750.345 kb on + strand, within MPMX19_05224at 750.490 kb on - strand, within MPMX19_05224at 750.490 kb on - strand, within MPMX19_05224at 750.971 kb on - strandat 751.054 kb on + strandat 751.141 kb on + strand, within MPMX19_05225at 751.141 kb on + strand, within MPMX19_05225at 751.142 kb on - strand, within MPMX19_05225at 751.142 kb on - strand, within MPMX19_05225at 751.142 kb on - strand, within MPMX19_05225at 751.142 kb on - strand, within MPMX19_05225at 751.142 kb on - strand, within MPMX19_05225at 751.267 kb on + strand, within MPMX19_05225at 751.267 kb on + strand, within MPMX19_05225at 751.267 kb on + strand, within MPMX19_05225at 751.267 kb on + strand, within MPMX19_05225at 751.267 kb on + strand, within MPMX19_05225at 751.267 kb on + strand, within MPMX19_05225at 751.267 kb on + strand, within MPMX19_05225at 751.268 kb on - strand, within MPMX19_05225at 751.268 kb on - strand, within MPMX19_05225at 751.273 kb on + strand, within MPMX19_05225at 751.273 kb on + strand, within MPMX19_05225at 751.273 kb on + strand, within MPMX19_05225at 751.273 kb on + strand, within MPMX19_05225at 751.274 kb on - strand, within MPMX19_05225at 751.549 kb on + strand, within MPMX19_05225at 751.550 kb on - strand, within MPMX19_05225at 751.550 kb on - strand, within MPMX19_05225

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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749,399 + MPMX19_05223 0.23 +2.0
749,399 + MPMX19_05223 0.23 +0.6
749,399 + MPMX19_05223 0.23 +0.5
749,399 + MPMX19_05223 0.23 +0.4
749,399 + MPMX19_05223 0.23 -0.4
749,399 + MPMX19_05223 0.23 +1.7
749,399 + MPMX19_05223 0.23 -1.3
749,399 + MPMX19_05223 0.23 -1.0
749,399 + MPMX19_05223 0.23 -0.6
749,399 + MPMX19_05223 0.23 +0.4
749,399 + MPMX19_05223 0.23 -1.0
749,399 + MPMX19_05223 0.23 -0.2
749,399 + MPMX19_05223 0.23 +0.3
749,400 - MPMX19_05223 0.23 -1.1
749,400 - MPMX19_05223 0.23 -1.7
749,400 - MPMX19_05223 0.23 -0.4
749,400 - MPMX19_05223 0.23 -0.1
749,400 - MPMX19_05223 0.23 -0.5
749,400 - MPMX19_05223 0.23 -1.3
749,400 - MPMX19_05223 0.23 -1.5
749,400 - MPMX19_05223 0.23 -0.0
749,400 - MPMX19_05223 0.23 -1.5
749,414 + MPMX19_05223 0.25 +0.2
749,414 + MPMX19_05223 0.25 -1.0
749,414 + MPMX19_05223 0.25 -0.9
749,414 + MPMX19_05223 0.25 -0.2
749,414 + MPMX19_05223 0.25 +1.7
749,414 + MPMX19_05223 0.25 -0.5
749,414 + MPMX19_05223 0.25 -0.2
749,414 + MPMX19_05223 0.25 -1.0
749,415 - MPMX19_05223 0.25 +0.5
749,415 - MPMX19_05223 0.25 +0.9
749,415 - MPMX19_05223 0.25 +0.8
749,415 - MPMX19_05223 0.25 -1.6
749,415 - MPMX19_05223 0.25 -0.5
749,492 + MPMX19_05223 0.36 -1.2
749,492 + MPMX19_05223 0.36 -1.4
749,492 + MPMX19_05223 0.36 -2.2
749,492 + MPMX19_05223 0.36 +1.2
749,493 - MPMX19_05223 0.36 -0.3
749,493 - MPMX19_05223 0.36 -0.1
749,493 - MPMX19_05223 0.36 -0.4
749,558 + MPMX19_05223 0.46 -0.4
749,558 + MPMX19_05223 0.46 -0.6
749,558 + MPMX19_05223 0.46 +0.7
749,559 - MPMX19_05223 0.46 -0.3
749,559 - MPMX19_05223 0.46 -0.8
749,559 - MPMX19_05223 0.46 -2.1
749,559 - MPMX19_05223 0.46 -1.9
749,619 + MPMX19_05223 0.55 +1.3
749,619 + MPMX19_05223 0.55 +0.4
749,619 + MPMX19_05223 0.55 -0.1
749,619 + MPMX19_05223 0.55 -0.2
749,620 - MPMX19_05223 0.55 -0.2
749,620 - MPMX19_05223 0.55 -0.4
749,624 + MPMX19_05223 0.55 +0.6
749,625 - MPMX19_05223 0.55 -0.3
749,627 + MPMX19_05223 0.56 +0.4
749,627 + MPMX19_05223 0.56 -1.3
749,627 + MPMX19_05223 0.56 +0.6
749,627 + MPMX19_05223 0.56 +0.3
749,627 + MPMX19_05223 0.56 -0.9
749,627 + MPMX19_05223 0.56 -0.9
749,627 + MPMX19_05223 0.56 -1.1
749,627 + MPMX19_05223 0.56 -1.1
749,628 - MPMX19_05223 0.56 -0.6
749,628 - MPMX19_05223 0.56 -1.3
749,628 - MPMX19_05223 0.56 -1.4
749,628 - MPMX19_05223 0.56 -0.5
749,843 + MPMX19_05223 0.87 +0.1
749,843 + MPMX19_05223 0.87 -0.2
749,843 + MPMX19_05223 0.87 +0.5
749,843 + MPMX19_05223 0.87 -0.9
749,843 + MPMX19_05223 0.87 +0.4
749,843 + MPMX19_05223 0.87 +0.3
749,843 + MPMX19_05223 0.87 -0.9
749,843 + MPMX19_05223 0.87 -0.9
749,844 - MPMX19_05223 0.87 -1.6
749,844 - MPMX19_05223 0.87 +0.1
750,113 + -0.1
750,113 + -0.4
750,113 + -0.1
750,114 - +0.5
750,114 - -0.2
750,114 - +0.1
750,114 - -1.1
750,114 - -2.1
750,114 - +0.1
750,345 + MPMX19_05224 0.28 +0.3
750,345 + MPMX19_05224 0.28 -0.4
750,490 - MPMX19_05224 0.56 -0.2
750,490 - MPMX19_05224 0.56 +0.1
750,971 - +0.7
751,054 + +0.4
751,141 + MPMX19_05225 0.12 +0.7
751,141 + MPMX19_05225 0.12 -1.9
751,142 - MPMX19_05225 0.12 -0.7
751,142 - MPMX19_05225 0.12 -2.1
751,142 - MPMX19_05225 0.12 -1.2
751,142 - MPMX19_05225 0.12 -1.6
751,142 - MPMX19_05225 0.12 -0.1
751,267 + MPMX19_05225 0.18 -0.6
751,267 + MPMX19_05225 0.18 +0.4
751,267 + MPMX19_05225 0.18 -0.5
751,267 + MPMX19_05225 0.18 -0.9
751,267 + MPMX19_05225 0.18 +3.3
751,267 + MPMX19_05225 0.18 -0.6
751,267 + MPMX19_05225 0.18 -2.5
751,268 - MPMX19_05225 0.18 +0.4
751,268 - MPMX19_05225 0.18 -1.5
751,273 + MPMX19_05225 0.18 +0.4
751,273 + MPMX19_05225 0.18 +0.7
751,273 + MPMX19_05225 0.18 -1.3
751,273 + MPMX19_05225 0.18 -1.5
751,274 - MPMX19_05225 0.18 -0.3
751,549 + MPMX19_05225 0.31 -0.9
751,550 - MPMX19_05225 0.31 -1.1
751,550 - MPMX19_05225 0.31 -0.9

Or see this region's nucleotide sequence