Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05220

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05219 and MPMX19_05220 are separated by 35 nucleotidesMPMX19_05220 and MPMX19_05221 are separated by 100 nucleotidesMPMX19_05221 and MPMX19_05222 are separated by 4 nucleotides MPMX19_05219: MPMX19_05219 - hypothetical protein, at 745,188 to 746,945 _05219 MPMX19_05220: MPMX19_05220 - hypothetical protein, at 746,981 to 747,529 _05220 MPMX19_05221: MPMX19_05221 - hypothetical protein, at 747,630 to 747,887 _05221 MPMX19_05222: MPMX19_05222 - Flagellar hook protein FlgE, at 747,892 to 749,202 _05222 Position (kb) 746 747 748Strain fitness (log2 ratio) -2 -1 0 1 2at 746.173 kb on + strand, within MPMX19_05219at 746.173 kb on + strand, within MPMX19_05219at 746.173 kb on + strand, within MPMX19_05219at 746.173 kb on + strand, within MPMX19_05219at 746.173 kb on + strand, within MPMX19_05219at 746.174 kb on - strand, within MPMX19_05219at 746.174 kb on - strand, within MPMX19_05219at 746.209 kb on + strand, within MPMX19_05219at 746.209 kb on + strand, within MPMX19_05219at 746.210 kb on - strand, within MPMX19_05219at 746.293 kb on + strand, within MPMX19_05219at 746.293 kb on + strand, within MPMX19_05219at 746.293 kb on + strand, within MPMX19_05219at 746.293 kb on + strand, within MPMX19_05219at 746.293 kb on + strand, within MPMX19_05219at 746.293 kb on + strand, within MPMX19_05219at 746.293 kb on + strand, within MPMX19_05219at 746.293 kb on + strand, within MPMX19_05219at 746.293 kb on + strand, within MPMX19_05219at 746.293 kb on + strand, within MPMX19_05219at 746.293 kb on + strand, within MPMX19_05219at 746.294 kb on - strand, within MPMX19_05219at 746.294 kb on - strand, within MPMX19_05219at 746.294 kb on - strand, within MPMX19_05219at 746.294 kb on - strand, within MPMX19_05219at 746.294 kb on - strand, within MPMX19_05219at 746.294 kb on - strand, within MPMX19_05219at 746.294 kb on - strand, within MPMX19_05219at 746.683 kb on + strand, within MPMX19_05219at 746.683 kb on + strand, within MPMX19_05219at 746.683 kb on + strand, within MPMX19_05219at 746.683 kb on + strand, within MPMX19_05219at 746.683 kb on + strand, within MPMX19_05219at 746.684 kb on - strand, within MPMX19_05219at 746.684 kb on - strand, within MPMX19_05219at 746.684 kb on - strand, within MPMX19_05219at 746.684 kb on - strand, within MPMX19_05219at 746.684 kb on - strand, within MPMX19_05219at 746.704 kb on + strand, within MPMX19_05219at 746.705 kb on - strand, within MPMX19_05219at 746.746 kb on + strand, within MPMX19_05219at 746.746 kb on + strand, within MPMX19_05219at 746.747 kb on - strand, within MPMX19_05219at 746.839 kb on + strandat 746.839 kb on + strandat 746.839 kb on + strandat 746.840 kb on - strandat 746.976 kb on + strandat 747.054 kb on + strand, within MPMX19_05220at 747.055 kb on - strand, within MPMX19_05220at 747.066 kb on + strand, within MPMX19_05220at 747.066 kb on + strand, within MPMX19_05220at 747.066 kb on + strand, within MPMX19_05220at 747.066 kb on + strand, within MPMX19_05220at 747.066 kb on + strand, within MPMX19_05220at 747.066 kb on + strand, within MPMX19_05220at 747.535 kb on + strandat 747.536 kb on - strandat 747.536 kb on - strandat 747.536 kb on - strandat 747.536 kb on - strandat 747.536 kb on - strandat 747.674 kb on + strand, within MPMX19_05221at 747.837 kb on + strand, within MPMX19_05221at 747.837 kb on + strand, within MPMX19_05221at 747.837 kb on + strand, within MPMX19_05221at 747.837 kb on + strand, within MPMX19_05221at 747.837 kb on + strand, within MPMX19_05221at 747.838 kb on - strand, within MPMX19_05221at 747.838 kb on - strand, within MPMX19_05221at 747.838 kb on - strand, within MPMX19_05221at 747.838 kb on - strand, within MPMX19_05221at 747.962 kb on + strandat 747.962 kb on + strandat 747.962 kb on + strandat 747.962 kb on + strandat 747.963 kb on - strandat 747.963 kb on - strandat 747.963 kb on - strandat 748.079 kb on + strand, within MPMX19_05222at 748.079 kb on + strand, within MPMX19_05222at 748.080 kb on - strand, within MPMX19_05222at 748.094 kb on + strand, within MPMX19_05222at 748.094 kb on + strand, within MPMX19_05222at 748.094 kb on + strand, within MPMX19_05222at 748.094 kb on + strand, within MPMX19_05222at 748.094 kb on + strand, within MPMX19_05222at 748.094 kb on + strand, within MPMX19_05222at 748.094 kb on + strand, within MPMX19_05222at 748.095 kb on - strand, within MPMX19_05222at 748.095 kb on - strand, within MPMX19_05222at 748.095 kb on - strand, within MPMX19_05222at 748.095 kb on - strand, within MPMX19_05222at 748.106 kb on + strand, within MPMX19_05222at 748.106 kb on + strand, within MPMX19_05222at 748.106 kb on + strand, within MPMX19_05222at 748.106 kb on + strand, within MPMX19_05222at 748.106 kb on + strand, within MPMX19_05222at 748.106 kb on + strand, within MPMX19_05222at 748.107 kb on - strand, within MPMX19_05222at 748.107 kb on - strand, within MPMX19_05222at 748.107 kb on - strand, within MPMX19_05222at 748.107 kb on - strand, within MPMX19_05222at 748.107 kb on - strand, within MPMX19_05222at 748.107 kb on - strand, within MPMX19_05222at 748.107 kb on - strand, within MPMX19_05222at 748.169 kb on + strand, within MPMX19_05222at 748.169 kb on + strand, within MPMX19_05222at 748.169 kb on + strand, within MPMX19_05222at 748.169 kb on + strand, within MPMX19_05222at 748.169 kb on + strand, within MPMX19_05222at 748.169 kb on + strand, within MPMX19_05222at 748.169 kb on + strand, within MPMX19_05222at 748.170 kb on - strand, within MPMX19_05222at 748.170 kb on - strand, within MPMX19_05222at 748.256 kb on + strand, within MPMX19_05222at 748.313 kb on + strand, within MPMX19_05222at 748.313 kb on + strand, within MPMX19_05222at 748.313 kb on + strand, within MPMX19_05222at 748.313 kb on + strand, within MPMX19_05222at 748.313 kb on + strand, within MPMX19_05222at 748.314 kb on - strand, within MPMX19_05222at 748.314 kb on - strand, within MPMX19_05222at 748.314 kb on - strand, within MPMX19_05222at 748.314 kb on - strand, within MPMX19_05222at 748.314 kb on - strand, within MPMX19_05222at 748.314 kb on - strand, within MPMX19_05222

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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746,173 + MPMX19_05219 0.56 +1.1
746,173 + MPMX19_05219 0.56 -0.7
746,173 + MPMX19_05219 0.56 -0.1
746,173 + MPMX19_05219 0.56 -1.6
746,173 + MPMX19_05219 0.56 +1.7
746,174 - MPMX19_05219 0.56 -1.9
746,174 - MPMX19_05219 0.56 -0.4
746,209 + MPMX19_05219 0.58 -0.0
746,209 + MPMX19_05219 0.58 -1.5
746,210 - MPMX19_05219 0.58 -0.8
746,293 + MPMX19_05219 0.63 -1.9
746,293 + MPMX19_05219 0.63 -0.3
746,293 + MPMX19_05219 0.63 -0.6
746,293 + MPMX19_05219 0.63 -1.3
746,293 + MPMX19_05219 0.63 -0.7
746,293 + MPMX19_05219 0.63 -0.6
746,293 + MPMX19_05219 0.63 -0.6
746,293 + MPMX19_05219 0.63 +0.0
746,293 + MPMX19_05219 0.63 -0.0
746,293 + MPMX19_05219 0.63 -0.3
746,293 + MPMX19_05219 0.63 -0.6
746,294 - MPMX19_05219 0.63 +0.9
746,294 - MPMX19_05219 0.63 -0.5
746,294 - MPMX19_05219 0.63 +0.5
746,294 - MPMX19_05219 0.63 -1.0
746,294 - MPMX19_05219 0.63 +0.9
746,294 - MPMX19_05219 0.63 -0.8
746,294 - MPMX19_05219 0.63 -1.0
746,683 + MPMX19_05219 0.85 -0.1
746,683 + MPMX19_05219 0.85 -2.3
746,683 + MPMX19_05219 0.85 -0.2
746,683 + MPMX19_05219 0.85 +0.2
746,683 + MPMX19_05219 0.85 -1.3
746,684 - MPMX19_05219 0.85 +0.2
746,684 - MPMX19_05219 0.85 -0.6
746,684 - MPMX19_05219 0.85 -0.2
746,684 - MPMX19_05219 0.85 -0.7
746,684 - MPMX19_05219 0.85 -1.0
746,704 + MPMX19_05219 0.86 -0.7
746,705 - MPMX19_05219 0.86 -0.6
746,746 + MPMX19_05219 0.89 +0.4
746,746 + MPMX19_05219 0.89 +0.8
746,747 - MPMX19_05219 0.89 -0.6
746,839 + +1.9
746,839 + +0.1
746,839 + -1.0
746,840 - -0.9
746,976 + -0.6
747,054 + MPMX19_05220 0.13 +1.4
747,055 - MPMX19_05220 0.13 +0.7
747,066 + MPMX19_05220 0.15 -0.6
747,066 + MPMX19_05220 0.15 -1.0
747,066 + MPMX19_05220 0.15 +0.9
747,066 + MPMX19_05220 0.15 +0.3
747,066 + MPMX19_05220 0.15 -0.1
747,066 + MPMX19_05220 0.15 +0.1
747,535 + -2.0
747,536 - +0.6
747,536 - +0.0
747,536 - +0.2
747,536 - -0.3
747,536 - -0.1
747,674 + MPMX19_05221 0.17 -2.0
747,837 + MPMX19_05221 0.80 -0.3
747,837 + MPMX19_05221 0.80 -2.7
747,837 + MPMX19_05221 0.80 -0.6
747,837 + MPMX19_05221 0.80 -0.9
747,837 + MPMX19_05221 0.80 +0.5
747,838 - MPMX19_05221 0.81 -1.4
747,838 - MPMX19_05221 0.81 +0.5
747,838 - MPMX19_05221 0.81 -0.2
747,838 - MPMX19_05221 0.81 -0.8
747,962 + +0.3
747,962 + -0.6
747,962 + -0.5
747,962 + -0.6
747,963 - -0.5
747,963 - -0.7
747,963 - -1.7
748,079 + MPMX19_05222 0.14 -0.3
748,079 + MPMX19_05222 0.14 +0.1
748,080 - MPMX19_05222 0.14 -1.2
748,094 + MPMX19_05222 0.15 +1.0
748,094 + MPMX19_05222 0.15 -0.0
748,094 + MPMX19_05222 0.15 -0.6
748,094 + MPMX19_05222 0.15 +0.7
748,094 + MPMX19_05222 0.15 -1.3
748,094 + MPMX19_05222 0.15 -2.3
748,094 + MPMX19_05222 0.15 +0.7
748,095 - MPMX19_05222 0.15 +1.1
748,095 - MPMX19_05222 0.15 -0.5
748,095 - MPMX19_05222 0.15 +0.1
748,095 - MPMX19_05222 0.15 +0.2
748,106 + MPMX19_05222 0.16 -0.1
748,106 + MPMX19_05222 0.16 +0.6
748,106 + MPMX19_05222 0.16 -0.3
748,106 + MPMX19_05222 0.16 -0.9
748,106 + MPMX19_05222 0.16 +0.4
748,106 + MPMX19_05222 0.16 -2.3
748,107 - MPMX19_05222 0.16 -2.5
748,107 - MPMX19_05222 0.16 +0.3
748,107 - MPMX19_05222 0.16 +0.4
748,107 - MPMX19_05222 0.16 +0.4
748,107 - MPMX19_05222 0.16 -0.2
748,107 - MPMX19_05222 0.16 -1.0
748,107 - MPMX19_05222 0.16 -2.0
748,169 + MPMX19_05222 0.21 -1.6
748,169 + MPMX19_05222 0.21 -0.2
748,169 + MPMX19_05222 0.21 -0.3
748,169 + MPMX19_05222 0.21 -2.7
748,169 + MPMX19_05222 0.21 -0.5
748,169 + MPMX19_05222 0.21 -0.9
748,169 + MPMX19_05222 0.21 -0.1
748,170 - MPMX19_05222 0.21 -1.1
748,170 - MPMX19_05222 0.21 -2.1
748,256 + MPMX19_05222 0.28 -2.0
748,313 + MPMX19_05222 0.32 -0.6
748,313 + MPMX19_05222 0.32 -1.5
748,313 + MPMX19_05222 0.32 -1.1
748,313 + MPMX19_05222 0.32 -0.0
748,313 + MPMX19_05222 0.32 -1.5
748,314 - MPMX19_05222 0.32 +1.4
748,314 - MPMX19_05222 0.32 +2.0
748,314 - MPMX19_05222 0.32 -0.1
748,314 - MPMX19_05222 0.32 -0.9
748,314 - MPMX19_05222 0.32 +0.1
748,314 - MPMX19_05222 0.32 +0.6

Or see this region's nucleotide sequence