Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05189 and MPMX19_05190 are separated by 49 nucleotides MPMX19_05190 and MPMX19_05191 are separated by 27 nucleotides MPMX19_05191 and MPMX19_05192 are separated by 43 nucleotides MPMX19_05192 and MPMX19_05193 are separated by 405 nucleotides
MPMX19_05189: MPMX19_05189 - hypothetical protein, at 692,408 to 693,460
_05189
MPMX19_05190: MPMX19_05190 - putative malonic semialdehyde reductase RutE, at 693,510 to 694,142
_05190
MPMX19_05191: MPMX19_05191 - Phenylacetate-coenzyme A ligase, at 694,170 to 695,504
_05191
MPMX19_05192: MPMX19_05192 - hypothetical protein, at 695,548 to 695,757
_05192
MPMX19_05193: MPMX19_05193 - Taurine-binding periplasmic protein, at 696,163 to 697,179
_05193
Position (kb) 694
695
696 Strain fitness (log2 ratio) -2
-1
0
1
2 at 693.709 kb on + strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.988 kb on + strand, within MPMX19_05190 at 693.988 kb on + strand, within MPMX19_05190 at 693.989 kb on - strand, within MPMX19_05190 at 694.127 kb on + strand at 694.128 kb on - strand at 694.128 kb on - strand at 694.686 kb on - strand, within MPMX19_05191 at 694.686 kb on - strand, within MPMX19_05191 at 694.686 kb on - strand, within MPMX19_05191 at 694.762 kb on + strand, within MPMX19_05191 at 694.762 kb on + strand, within MPMX19_05191 at 694.765 kb on + strand, within MPMX19_05191 at 694.765 kb on + strand, within MPMX19_05191 at 694.765 kb on + strand, within MPMX19_05191 at 694.771 kb on + strand, within MPMX19_05191 at 694.771 kb on + strand, within MPMX19_05191 at 694.771 kb on + strand, within MPMX19_05191 at 694.772 kb on + strand, within MPMX19_05191 at 695.084 kb on - strand, within MPMX19_05191 at 695.212 kb on + strand, within MPMX19_05191 at 695.212 kb on + strand, within MPMX19_05191 at 695.212 kb on + strand, within MPMX19_05191 at 695.212 kb on + strand, within MPMX19_05191 at 695.212 kb on + strand, within MPMX19_05191 at 695.212 kb on + strand, within MPMX19_05191 at 695.213 kb on - strand, within MPMX19_05191 at 695.213 kb on - strand, within MPMX19_05191 at 695.213 kb on - strand, within MPMX19_05191 at 695.313 kb on + strand, within MPMX19_05191 at 695.314 kb on - strand, within MPMX19_05191 at 695.314 kb on - strand, within MPMX19_05191 at 695.314 kb on - strand, within MPMX19_05191 at 695.314 kb on - strand, within MPMX19_05191 at 695.375 kb on - strand at 695.375 kb on - strand at 695.377 kb on + strand at 695.377 kb on + strand at 695.378 kb on - strand at 695.378 kb on - strand at 695.392 kb on + strand at 695.392 kb on + strand at 695.392 kb on + strand at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.664 kb on + strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.665 kb on - strand, within MPMX19_05192 at 695.770 kb on + strand at 695.770 kb on + strand at 695.770 kb on + strand at 695.770 kb on + strand at 695.771 kb on - strand at 695.771 kb on - strand at 695.771 kb on - strand at 695.771 kb on - strand at 695.771 kb on - strand at 695.771 kb on - strand at 695.771 kb on - strand at 695.834 kb on + strand at 695.835 kb on - strand at 696.093 kb on + strand at 696.094 kb on - strand at 696.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 693,709 + MPMX19_05190 0.31 -0.6 693,791 - MPMX19_05190 0.44 -0.5 693,791 - MPMX19_05190 0.44 -1.5 693,791 - MPMX19_05190 0.44 -0.2 693,791 - MPMX19_05190 0.44 +0.1 693,835 + MPMX19_05190 0.51 -2.1 693,835 + MPMX19_05190 0.51 +1.0 693,835 + MPMX19_05190 0.51 +0.6 693,835 + MPMX19_05190 0.51 -0.6 693,835 + MPMX19_05190 0.51 -1.9 693,835 + MPMX19_05190 0.51 +1.0 693,835 + MPMX19_05190 0.51 +1.4 693,835 + MPMX19_05190 0.51 -0.3 693,988 + MPMX19_05190 0.76 -0.6 693,988 + MPMX19_05190 0.76 +1.1 693,989 - MPMX19_05190 0.76 -0.3 694,127 + -0.4 694,128 - -0.5 694,128 - +0.6 694,686 - MPMX19_05191 0.39 -1.0 694,686 - MPMX19_05191 0.39 -1.6 694,686 - MPMX19_05191 0.39 -0.3 694,762 + MPMX19_05191 0.44 +1.7 694,762 + MPMX19_05191 0.44 -2.0 694,765 + MPMX19_05191 0.45 -0.0 694,765 + MPMX19_05191 0.45 -0.3 694,765 + MPMX19_05191 0.45 +0.3 694,771 + MPMX19_05191 0.45 -0.7 694,771 + MPMX19_05191 0.45 -0.4 694,771 + MPMX19_05191 0.45 -1.2 694,772 + MPMX19_05191 0.45 +0.3 695,084 - MPMX19_05191 0.68 -0.3 695,212 + MPMX19_05191 0.78 -0.3 695,212 + MPMX19_05191 0.78 -0.5 695,212 + MPMX19_05191 0.78 -0.7 695,212 + MPMX19_05191 0.78 +0.1 695,212 + MPMX19_05191 0.78 -0.9 695,212 + MPMX19_05191 0.78 -1.3 695,213 - MPMX19_05191 0.78 +1.0 695,213 - MPMX19_05191 0.78 -0.6 695,213 - MPMX19_05191 0.78 -1.4 695,313 + MPMX19_05191 0.86 +1.5 695,314 - MPMX19_05191 0.86 -1.8 695,314 - MPMX19_05191 0.86 +0.7 695,314 - MPMX19_05191 0.86 -0.3 695,314 - MPMX19_05191 0.86 -2.1 695,375 - -0.5 695,375 - +1.4 695,377 + -0.1 695,377 + +0.5 695,378 - -0.7 695,378 - -0.6 695,392 + -0.9 695,392 + -1.3 695,392 + +1.1 695,664 + MPMX19_05192 0.55 +1.1 695,664 + MPMX19_05192 0.55 -0.6 695,664 + MPMX19_05192 0.55 +1.7 695,664 + MPMX19_05192 0.55 -1.3 695,664 + MPMX19_05192 0.55 -0.3 695,664 + MPMX19_05192 0.55 -0.4 695,664 + MPMX19_05192 0.55 -1.2 695,664 + MPMX19_05192 0.55 +1.2 695,665 - MPMX19_05192 0.56 -1.3 695,665 - MPMX19_05192 0.56 +1.2 695,665 - MPMX19_05192 0.56 -0.4 695,665 - MPMX19_05192 0.56 +0.4 695,665 - MPMX19_05192 0.56 -0.9 695,665 - MPMX19_05192 0.56 -1.6 695,665 - MPMX19_05192 0.56 -0.0 695,665 - MPMX19_05192 0.56 +0.3 695,665 - MPMX19_05192 0.56 -0.6 695,665 - MPMX19_05192 0.56 -0.4 695,665 - MPMX19_05192 0.56 -0.3 695,770 + -0.3 695,770 + +0.9 695,770 + -1.6 695,770 + -0.1 695,771 - +2.0 695,771 - -0.2 695,771 - -0.8 695,771 - +0.4 695,771 - +0.3 695,771 - -0.8 695,771 - -0.2 695,834 + -0.3 695,835 - -1.6 696,093 + -0.6 696,094 - +0.5 696,094 - -0.1
Or see this region's nucleotide sequence