Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05175

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05174 and MPMX19_05175 are separated by 30 nucleotidesMPMX19_05175 and MPMX19_05176 are separated by 38 nucleotidesMPMX19_05176 and MPMX19_05177 are separated by 27 nucleotides MPMX19_05174: MPMX19_05174 - Putative acyl-CoA dehydrogenase YdbM, at 677,272 to 678,477 _05174 MPMX19_05175: MPMX19_05175 - hypothetical protein, at 678,508 to 679,524 _05175 MPMX19_05176: MPMX19_05176 - 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase, at 679,563 to 680,348 _05176 MPMX19_05177: MPMX19_05177 - Glyoxylate/hydroxypyruvate reductase A, at 680,376 to 681,335 _05177 Position (kb) 678 679 680Strain fitness (log2 ratio) -3 -2 -1 0 1at 677.678 kb on + strand, within MPMX19_05174at 677.972 kb on + strand, within MPMX19_05174at 677.972 kb on + strand, within MPMX19_05174at 677.973 kb on - strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.596 kb on + strandat 678.596 kb on + strandat 678.596 kb on + strandat 678.596 kb on + strandat 678.707 kb on + strand, within MPMX19_05175at 678.707 kb on + strand, within MPMX19_05175at 678.707 kb on + strand, within MPMX19_05175at 678.707 kb on + strand, within MPMX19_05175at 678.707 kb on + strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.737 kb on + strand, within MPMX19_05175at 678.738 kb on - strand, within MPMX19_05175at 679.622 kb on - strandat 679.906 kb on + strand, within MPMX19_05176at 679.906 kb on + strand, within MPMX19_05176at 679.906 kb on + strand, within MPMX19_05176at 679.907 kb on - strand, within MPMX19_05176at 679.907 kb on - strand, within MPMX19_05176at 679.907 kb on - strand, within MPMX19_05176at 679.907 kb on - strand, within MPMX19_05176at 680.291 kb on - strandat 680.291 kb on - strandat 680.291 kb on - strandat 680.291 kb on - strandat 680.291 kb on - strandat 680.381 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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677,678 + MPMX19_05174 0.34 +0.0
677,972 + MPMX19_05174 0.58 -1.2
677,972 + MPMX19_05174 0.58 +0.3
677,973 - MPMX19_05174 0.58 -0.3
678,176 + MPMX19_05174 0.75 -0.5
678,176 + MPMX19_05174 0.75 +0.7
678,176 + MPMX19_05174 0.75 -0.7
678,176 + MPMX19_05174 0.75 -0.1
678,176 + MPMX19_05174 0.75 -0.8
678,176 + MPMX19_05174 0.75 -0.9
678,176 + MPMX19_05174 0.75 -0.4
678,176 + MPMX19_05174 0.75 +0.3
678,176 + MPMX19_05174 0.75 +0.0
678,176 + MPMX19_05174 0.75 -0.2
678,176 + MPMX19_05174 0.75 -1.0
678,176 + MPMX19_05174 0.75 +0.1
678,176 + MPMX19_05174 0.75 -0.4
678,176 + MPMX19_05174 0.75 -1.5
678,176 + MPMX19_05174 0.75 -1.1
678,176 + MPMX19_05174 0.75 -0.5
678,176 + MPMX19_05174 0.75 -0.1
678,177 - MPMX19_05174 0.75 -0.7
678,177 - MPMX19_05174 0.75 -0.1
678,177 - MPMX19_05174 0.75 +1.1
678,177 - MPMX19_05174 0.75 -1.3
678,177 - MPMX19_05174 0.75 -1.2
678,177 - MPMX19_05174 0.75 -1.1
678,177 - MPMX19_05174 0.75 -1.1
678,177 - MPMX19_05174 0.75 -1.6
678,177 - MPMX19_05174 0.75 -0.2
678,177 - MPMX19_05174 0.75 +0.8
678,177 - MPMX19_05174 0.75 +0.0
678,177 - MPMX19_05174 0.75 -0.1
678,177 - MPMX19_05174 0.75 -0.7
678,177 - MPMX19_05174 0.75 -0.6
678,177 - MPMX19_05174 0.75 -1.6
678,177 - MPMX19_05174 0.75 -0.0
678,177 - MPMX19_05174 0.75 -0.9
678,177 - MPMX19_05174 0.75 -0.6
678,177 - MPMX19_05174 0.75 +1.5
678,177 - MPMX19_05174 0.75 -0.1
678,177 - MPMX19_05174 0.75 -0.1
678,177 - MPMX19_05174 0.75 +0.7
678,177 - MPMX19_05174 0.75 -0.3
678,177 - MPMX19_05174 0.75 +0.1
678,177 - MPMX19_05174 0.75 -0.9
678,596 + -1.3
678,596 + +0.1
678,596 + +0.7
678,596 + +0.5
678,707 + MPMX19_05175 0.20 +0.9
678,707 + MPMX19_05175 0.20 -0.5
678,707 + MPMX19_05175 0.20 -0.6
678,707 + MPMX19_05175 0.20 -2.0
678,707 + MPMX19_05175 0.20 -0.2
678,708 - MPMX19_05175 0.20 +0.2
678,708 - MPMX19_05175 0.20 +0.4
678,708 - MPMX19_05175 0.20 -2.9
678,708 - MPMX19_05175 0.20 +0.1
678,708 - MPMX19_05175 0.20 +0.5
678,708 - MPMX19_05175 0.20 -0.3
678,737 + MPMX19_05175 0.23 +0.4
678,738 - MPMX19_05175 0.23 +0.6
679,622 - -1.2
679,906 + MPMX19_05176 0.44 -0.6
679,906 + MPMX19_05176 0.44 +1.3
679,906 + MPMX19_05176 0.44 -0.6
679,907 - MPMX19_05176 0.44 -2.2
679,907 - MPMX19_05176 0.44 -0.5
679,907 - MPMX19_05176 0.44 -0.3
679,907 - MPMX19_05176 0.44 +0.7
680,291 - +0.6
680,291 - -0.2
680,291 - -0.1
680,291 - +0.6
680,291 - -0.6
680,381 - -0.1
680,429 - +0.0
680,429 - -2.2
680,429 - +0.6
680,429 - +0.0
680,429 - +0.3
680,429 - -0.5
680,429 - -0.5
680,429 - -1.1
680,429 - +0.6
680,429 - +0.3

Or see this region's nucleotide sequence