Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05142 and MPMX19_05143 are separated by 688 nucleotides MPMX19_05143 and MPMX19_05144 are separated by 182 nucleotides
MPMX19_05142: MPMX19_05142 - hypothetical protein, at 636,768 to 637,658
_05142
MPMX19_05143: MPMX19_05143 - hypothetical protein, at 638,347 to 638,565
_05143
MPMX19_05144: MPMX19_05144 - hypothetical protein, at 638,748 to 638,882
_05144
Position (kb) 638
639 Strain fitness (log2 ratio) -2
-1
0
1
2 at 637.393 kb on - strand, within MPMX19_05142 at 637.430 kb on - strand, within MPMX19_05142 at 637.546 kb on + strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.547 kb on - strand, within MPMX19_05142 at 637.703 kb on + strand at 637.703 kb on + strand at 637.703 kb on + strand at 637.703 kb on + strand at 637.703 kb on + strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.704 kb on - strand at 637.741 kb on - strand at 637.790 kb on + strand at 637.790 kb on + strand at 637.791 kb on - strand at 637.791 kb on - strand at 637.791 kb on - strand at 637.791 kb on - strand at 637.803 kb on + strand at 637.803 kb on + strand at 637.803 kb on + strand at 637.804 kb on - strand at 637.804 kb on - strand at 637.804 kb on - strand at 637.804 kb on - strand at 638.064 kb on + strand at 638.064 kb on + strand at 638.065 kb on - strand at 638.065 kb on - strand at 638.140 kb on + strand at 638.140 kb on + strand at 638.140 kb on + strand at 638.217 kb on + strand at 638.218 kb on - strand at 638.218 kb on - strand at 638.269 kb on - strand at 638.281 kb on + strand at 638.281 kb on + strand at 638.281 kb on + strand at 638.281 kb on + strand at 638.281 kb on + strand at 638.281 kb on + strand at 638.281 kb on + strand at 638.282 kb on - strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.285 kb on + strand at 638.286 kb on - strand at 638.286 kb on - strand at 638.286 kb on - strand at 638.286 kb on - strand at 638.286 kb on - strand at 638.286 kb on - strand at 638.337 kb on + strand at 638.346 kb on + strand at 638.346 kb on + strand at 638.346 kb on + strand at 638.346 kb on + strand at 638.347 kb on - strand at 638.347 kb on - strand at 638.361 kb on + strand at 638.361 kb on + strand at 638.361 kb on + strand at 638.361 kb on + strand at 638.362 kb on - strand at 638.362 kb on - strand at 638.362 kb on - strand at 638.491 kb on + strand, within MPMX19_05143 at 638.491 kb on + strand, within MPMX19_05143 at 638.492 kb on - strand, within MPMX19_05143 at 638.563 kb on + strand at 638.611 kb on + strand at 638.611 kb on + strand at 638.791 kb on + strand, within MPMX19_05144 at 638.792 kb on - strand, within MPMX19_05144 at 638.792 kb on - strand, within MPMX19_05144 at 638.897 kb on + strand at 638.897 kb on + strand at 638.897 kb on + strand at 638.898 kb on - strand at 638.898 kb on - strand at 638.898 kb on - strand at 638.956 kb on + strand at 638.956 kb on + strand at 638.976 kb on + strand at 638.976 kb on + strand at 638.976 kb on + strand at 638.977 kb on - strand at 638.977 kb on - strand at 638.977 kb on - strand at 638.981 kb on - strand at 638.981 kb on - strand at 639.006 kb on + strand at 639.006 kb on + strand at 639.007 kb on - strand at 639.007 kb on - strand at 639.007 kb on - strand at 639.007 kb on - strand at 639.007 kb on - strand at 639.041 kb on + strand at 639.041 kb on + strand at 639.041 kb on + strand at 639.041 kb on + strand at 639.041 kb on + strand at 639.041 kb on - strand at 639.042 kb on - strand at 639.042 kb on - strand at 639.042 kb on - strand at 639.042 kb on - strand at 639.074 kb on + strand at 639.074 kb on + strand at 639.074 kb on + strand at 639.074 kb on + strand at 639.075 kb on - strand at 639.075 kb on - strand at 639.094 kb on + strand at 639.094 kb on + strand at 639.095 kb on - strand at 639.095 kb on - strand at 639.095 kb on - strand at 639.095 kb on - strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.144 kb on + strand at 639.145 kb on - strand at 639.145 kb on - strand at 639.145 kb on - strand at 639.145 kb on - strand at 639.145 kb on - strand at 639.165 kb on + strand at 639.165 kb on + strand at 639.166 kb on - strand at 639.166 kb on - strand at 639.176 kb on + strand at 639.176 kb on + strand at 639.177 kb on - strand at 639.177 kb on - strand at 639.177 kb on - strand at 639.177 kb on - strand at 639.177 kb on - strand at 639.258 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.423 kb on + strand at 639.424 kb on - strand at 639.424 kb on - strand at 639.424 kb on - strand at 639.424 kb on - strand at 639.424 kb on - strand at 639.424 kb on - strand at 639.424 kb on - strand at 639.427 kb on + strand at 639.427 kb on + strand at 639.428 kb on - strand at 639.428 kb on - strand at 639.428 kb on - strand at 639.428 kb on - strand at 639.428 kb on - strand at 639.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 637,393 - MPMX19_05142 0.70 +2.3 637,430 - MPMX19_05142 0.74 -0.2 637,546 + MPMX19_05142 0.87 -0.3 637,547 - MPMX19_05142 0.87 -1.7 637,547 - MPMX19_05142 0.87 -1.1 637,547 - MPMX19_05142 0.87 +0.7 637,547 - MPMX19_05142 0.87 -2.4 637,547 - MPMX19_05142 0.87 +0.7 637,547 - MPMX19_05142 0.87 +0.6 637,547 - MPMX19_05142 0.87 -0.6 637,547 - MPMX19_05142 0.87 -2.1 637,547 - MPMX19_05142 0.87 -0.9 637,547 - MPMX19_05142 0.87 -0.1 637,547 - MPMX19_05142 0.87 -1.0 637,703 + +1.7 637,703 + -0.9 637,703 + -1.0 637,703 + +0.6 637,703 + -1.8 637,704 - -0.7 637,704 - -1.5 637,704 - +0.9 637,704 - -0.5 637,704 - +0.3 637,704 - -1.9 637,704 - -0.9 637,704 - -0.9 637,704 - -1.3 637,741 - +0.3 637,790 + +0.5 637,790 + -1.1 637,791 - -0.6 637,791 - -0.3 637,791 - -0.4 637,791 - -2.0 637,803 + -0.4 637,803 + +1.0 637,803 + -0.0 637,804 - -0.1 637,804 - -0.1 637,804 - +0.7 637,804 - -0.1 638,064 + -0.1 638,064 + -0.0 638,065 - +0.0 638,065 - -0.1 638,140 + -0.2 638,140 + +0.6 638,140 + -0.9 638,217 + +1.7 638,218 - +0.1 638,218 - +0.1 638,269 - -1.5 638,281 + -0.7 638,281 + -0.9 638,281 + -0.7 638,281 + -1.1 638,281 + +1.7 638,281 + -0.3 638,281 + -1.7 638,282 - -0.5 638,285 + -1.6 638,285 + -1.5 638,285 + -0.9 638,285 + +0.1 638,285 + -1.2 638,285 + -1.1 638,285 + +0.0 638,285 + -0.2 638,286 - +0.6 638,286 - -0.5 638,286 - -1.1 638,286 - -0.5 638,286 - -0.3 638,286 - -1.1 638,337 + +1.5 638,346 + -1.1 638,346 + -2.0 638,346 + +0.1 638,346 + -1.9 638,347 - +0.1 638,347 - -0.6 638,361 + -0.8 638,361 + -0.6 638,361 + -1.1 638,361 + -0.6 638,362 - -0.7 638,362 - -1.5 638,362 - -0.0 638,491 + MPMX19_05143 0.66 -2.2 638,491 + MPMX19_05143 0.66 -1.6 638,492 - MPMX19_05143 0.66 +0.7 638,563 + +0.7 638,611 + -0.7 638,611 + -0.3 638,791 + MPMX19_05144 0.32 +0.1 638,792 - MPMX19_05144 0.33 -0.7 638,792 - MPMX19_05144 0.33 +0.4 638,897 + +0.4 638,897 + -0.9 638,897 + -0.1 638,898 - +0.3 638,898 - -1.2 638,898 - -0.1 638,956 + -1.2 638,956 + -1.1 638,976 + +0.6 638,976 + +0.3 638,976 + -1.2 638,977 - -0.0 638,977 - +0.4 638,977 - -0.7 638,981 - +0.1 638,981 - -0.3 639,006 + +0.1 639,006 + +2.3 639,007 - -0.5 639,007 - +0.3 639,007 - -1.1 639,007 - +0.4 639,007 - -0.1 639,041 + -1.3 639,041 + +0.1 639,041 + -0.4 639,041 + -1.3 639,041 + -0.8 639,041 - +0.7 639,042 - +0.5 639,042 - -0.5 639,042 - -0.7 639,042 - -0.2 639,074 + -0.7 639,074 + +1.2 639,074 + -1.9 639,074 + -1.5 639,075 - +0.3 639,075 - -0.9 639,094 + -2.4 639,094 + +0.2 639,095 - -1.7 639,095 - -0.3 639,095 - -2.1 639,095 - +0.5 639,144 + -1.5 639,144 + +0.2 639,144 + -0.3 639,144 + +0.5 639,144 + -0.1 639,144 + -0.9 639,144 + -0.7 639,144 + -0.9 639,144 + -0.3 639,144 + -2.5 639,145 - -0.1 639,145 - +0.0 639,145 - +0.7 639,145 - -0.6 639,145 - +0.3 639,165 + +0.4 639,165 + -1.1 639,166 - +0.1 639,166 - -0.2 639,176 + +0.2 639,176 + -1.1 639,177 - -1.9 639,177 - -1.1 639,177 - -0.4 639,177 - +0.1 639,177 - -1.8 639,258 + +0.7 639,423 + -1.9 639,423 + -0.7 639,423 + -2.0 639,423 + +0.9 639,423 + -1.2 639,423 + -0.7 639,423 + -0.6 639,423 + -0.3 639,423 + -0.7 639,423 + -1.5 639,423 + -0.3 639,423 + -0.3 639,424 - -0.0 639,424 - +0.6 639,424 - -1.1 639,424 - -0.6 639,424 - -0.3 639,424 - +0.0 639,424 - +0.2 639,427 + -0.5 639,427 + -0.2 639,428 - -0.8 639,428 - -2.1 639,428 - -0.9 639,428 - -1.5 639,428 - -0.4 639,428 - -0.6
Or see this region's nucleotide sequence