Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05034

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05032 and MPMX19_05033 overlap by 38 nucleotidesMPMX19_05033 and MPMX19_05034 are separated by 24 nucleotidesMPMX19_05034 and MPMX19_05035 are separated by 5 nucleotidesMPMX19_05035 and MPMX19_05036 overlap by 4 nucleotidesMPMX19_05036 and MPMX19_05037 are separated by 1 nucleotides MPMX19_05032: MPMX19_05032 - ATP synthase subunit alpha, at 519,206 to 520,735 _05032 MPMX19_05033: MPMX19_05033 - ATP synthase subunit b, at 520,698 to 521,471 _05033 MPMX19_05034: MPMX19_05034 - ATP synthase subunit c, at 521,496 to 521,735 _05034 MPMX19_05035: MPMX19_05035 - ATP synthase subunit a, at 521,741 to 522,415 _05035 MPMX19_05036: MPMX19_05036 - hypothetical protein, at 522,412 to 522,711 _05036 MPMX19_05037: MPMX19_05037 - hypothetical protein, at 522,713 to 522,991 _05037 Position (kb) 521 522Strain fitness (log2 ratio) -2 -1 0 1at 521.374 kb on - strand, within MPMX19_05033at 521.545 kb on + strand, within MPMX19_05034at 521.545 kb on + strand, within MPMX19_05034at 521.545 kb on + strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.742 kb on + strandat 521.743 kb on - strandat 521.743 kb on - strandat 521.743 kb on - strandat 521.805 kb on + strandat 521.805 kb on + strandat 521.805 kb on + strandat 521.805 kb on + strandat 521.805 kb on + strandat 521.805 kb on + strandat 521.805 kb on + strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.153 kb on + strand, within MPMX19_05035at 522.153 kb on + strand, within MPMX19_05035at 522.154 kb on - strand, within MPMX19_05035at 522.154 kb on - strand, within MPMX19_05035at 522.154 kb on - strand, within MPMX19_05035at 522.575 kb on + strand, within MPMX19_05036at 522.575 kb on + strand, within MPMX19_05036at 522.575 kb on + strand, within MPMX19_05036at 522.575 kb on + strand, within MPMX19_05036at 522.576 kb on - strand, within MPMX19_05036at 522.576 kb on - strand, within MPMX19_05036at 522.576 kb on - strand, within MPMX19_05036at 522.604 kb on + strand, within MPMX19_05036at 522.604 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
521,374 - MPMX19_05033 0.87 +1.7
521,545 + MPMX19_05034 0.20 -0.6
521,545 + MPMX19_05034 0.20 -2.3
521,545 + MPMX19_05034 0.20 +0.1
521,546 - MPMX19_05034 0.21 -0.9
521,546 - MPMX19_05034 0.21 -0.1
521,546 - MPMX19_05034 0.21 -1.3
521,546 - MPMX19_05034 0.21 +0.6
521,546 - MPMX19_05034 0.21 +0.9
521,546 - MPMX19_05034 0.21 -0.6
521,546 - MPMX19_05034 0.21 +0.1
521,546 - MPMX19_05034 0.21 -0.6
521,546 - MPMX19_05034 0.21 -0.5
521,742 + -1.7
521,743 - -1.9
521,743 - +0.1
521,743 - +0.1
521,805 + -0.8
521,805 + -0.2
521,805 + +0.9
521,805 + -0.3
521,805 + -1.6
521,805 + -0.9
521,805 + -2.2
521,806 - -0.0
521,806 - -0.9
521,806 - -0.1
521,806 - +0.1
521,806 - -0.6
521,806 - +0.7
521,806 - +0.5
521,806 - -1.7
521,806 - -0.6
521,806 - +0.8
522,012 + MPMX19_05035 0.40 -0.7
522,012 + MPMX19_05035 0.40 +0.6
522,012 + MPMX19_05035 0.40 -0.3
522,012 + MPMX19_05035 0.40 +0.5
522,012 + MPMX19_05035 0.40 -0.9
522,012 + MPMX19_05035 0.40 -1.1
522,013 - MPMX19_05035 0.40 +0.2
522,013 - MPMX19_05035 0.40 -0.3
522,013 - MPMX19_05035 0.40 -1.9
522,013 - MPMX19_05035 0.40 -0.9
522,013 - MPMX19_05035 0.40 +0.9
522,013 - MPMX19_05035 0.40 -0.4
522,013 - MPMX19_05035 0.40 -1.7
522,013 - MPMX19_05035 0.40 -0.4
522,153 + MPMX19_05035 0.61 -0.3
522,153 + MPMX19_05035 0.61 +0.8
522,154 - MPMX19_05035 0.61 +0.6
522,154 - MPMX19_05035 0.61 -0.3
522,154 - MPMX19_05035 0.61 -0.1
522,575 + MPMX19_05036 0.54 -2.0
522,575 + MPMX19_05036 0.54 +0.2
522,575 + MPMX19_05036 0.54 -2.0
522,575 + MPMX19_05036 0.54 +0.6
522,576 - MPMX19_05036 0.55 -1.6
522,576 - MPMX19_05036 0.55 -0.3
522,576 - MPMX19_05036 0.55 -0.4
522,604 + MPMX19_05036 0.64 -0.9
522,604 + MPMX19_05036 0.64 +0.3
522,611 + MPMX19_05036 0.66 -0.3
522,611 + MPMX19_05036 0.66 +0.2
522,611 + MPMX19_05036 0.66 -0.4
522,611 + MPMX19_05036 0.66 -1.4
522,611 + MPMX19_05036 0.66 +1.7
522,611 + MPMX19_05036 0.66 +1.1
522,611 + MPMX19_05036 0.66 +0.2
522,611 + MPMX19_05036 0.66 +0.2
522,611 + MPMX19_05036 0.66 -0.1
522,612 - MPMX19_05036 0.67 +0.1
522,612 - MPMX19_05036 0.67 +0.7
522,612 - MPMX19_05036 0.67 +0.1
522,612 - MPMX19_05036 0.67 -1.7
522,612 - MPMX19_05036 0.67 +0.1
522,612 - MPMX19_05036 0.67 -0.6
522,612 - MPMX19_05036 0.67 -0.3
522,612 - MPMX19_05036 0.67 -0.1
522,612 - MPMX19_05036 0.67 -0.3
522,612 - MPMX19_05036 0.67 +1.7

Or see this region's nucleotide sequence