Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05015

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05013 and MPMX19_05014 overlap by 1 nucleotidesMPMX19_05014 and MPMX19_05015 are separated by 112 nucleotidesMPMX19_05015 and MPMX19_05016 are separated by 30 nucleotides MPMX19_05013: MPMX19_05013 - Cytochrome b, at 494,531 to 495,799 _05013 MPMX19_05014: MPMX19_05014 - Cytochrome c1, at 495,799 to 496,560 _05014 MPMX19_05015: MPMX19_05015 - hypothetical protein, at 496,673 to 497,224 _05015 MPMX19_05016: MPMX19_05016 - Sensor histidine kinase RcsC, at 497,255 to 498,133 _05016 Position (kb) 496 497 498Strain fitness (log2 ratio) -1 0 1 2 3 4at 495.961 kb on + strand, within MPMX19_05014at 495.961 kb on + strand, within MPMX19_05014at 495.962 kb on - strand, within MPMX19_05014at 496.240 kb on + strand, within MPMX19_05014at 496.240 kb on + strand, within MPMX19_05014at 496.246 kb on + strand, within MPMX19_05014at 496.246 kb on + strand, within MPMX19_05014at 496.246 kb on + strand, within MPMX19_05014at 496.246 kb on + strand, within MPMX19_05014at 496.247 kb on - strand, within MPMX19_05014at 496.247 kb on - strand, within MPMX19_05014at 496.247 kb on - strand, within MPMX19_05014at 496.247 kb on - strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.310 kb on - strand, within MPMX19_05014at 496.310 kb on - strand, within MPMX19_05014at 496.310 kb on - strand, within MPMX19_05014at 496.522 kb on + strandat 496.522 kb on + strandat 496.523 kb on - strandat 496.523 kb on - strandat 496.588 kb on + strandat 496.588 kb on + strandat 496.588 kb on + strandat 496.589 kb on - strandat 496.589 kb on - strandat 496.589 kb on - strandat 496.733 kb on + strand, within MPMX19_05015at 496.733 kb on + strand, within MPMX19_05015at 496.793 kb on + strand, within MPMX19_05015at 496.793 kb on + strand, within MPMX19_05015at 496.793 kb on + strand, within MPMX19_05015at 496.794 kb on - strand, within MPMX19_05015at 496.794 kb on - strand, within MPMX19_05015at 496.794 kb on - strand, within MPMX19_05015at 496.794 kb on - strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 497.006 kb on + strand, within MPMX19_05015at 497.006 kb on + strand, within MPMX19_05015at 497.006 kb on + strand, within MPMX19_05015at 497.006 kb on + strand, within MPMX19_05015at 497.007 kb on - strand, within MPMX19_05015at 497.007 kb on - strand, within MPMX19_05015at 497.007 kb on - strand, within MPMX19_05015at 497.099 kb on + strand, within MPMX19_05015at 497.100 kb on - strand, within MPMX19_05015at 497.100 kb on - strand, within MPMX19_05015at 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.329 kb on - strandat 497.329 kb on - strandat 497.329 kb on - strandat 497.329 kb on - strandat 497.329 kb on - strandat 497.823 kb on + strand, within MPMX19_05016at 497.824 kb on - strand, within MPMX19_05016at 497.824 kb on - strand, within MPMX19_05016

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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495,961 + MPMX19_05014 0.21 -0.3
495,961 + MPMX19_05014 0.21 +0.2
495,962 - MPMX19_05014 0.21 +0.2
496,240 + MPMX19_05014 0.58 +0.2
496,240 + MPMX19_05014 0.58 -0.3
496,246 + MPMX19_05014 0.59 -1.3
496,246 + MPMX19_05014 0.59 +0.2
496,246 + MPMX19_05014 0.59 +0.2
496,246 + MPMX19_05014 0.59 +0.7
496,247 - MPMX19_05014 0.59 +0.7
496,247 - MPMX19_05014 0.59 +1.7
496,247 - MPMX19_05014 0.59 +1.2
496,247 - MPMX19_05014 0.59 +1.7
496,309 + MPMX19_05014 0.67 -1.1
496,309 + MPMX19_05014 0.67 -0.8
496,309 + MPMX19_05014 0.67 +4.1
496,309 + MPMX19_05014 0.67 +0.7
496,309 + MPMX19_05014 0.67 +0.2
496,309 + MPMX19_05014 0.67 -0.8
496,310 - MPMX19_05014 0.67 -0.8
496,310 - MPMX19_05014 0.67 -0.3
496,310 - MPMX19_05014 0.67 +0.7
496,522 + +0.7
496,522 + +0.7
496,523 - +2.1
496,523 - -1.3
496,588 + -1.4
496,588 + -0.1
496,588 + -0.1
496,589 - -1.1
496,589 - +0.4
496,589 - -1.4
496,733 + MPMX19_05015 0.11 -0.1
496,733 + MPMX19_05015 0.11 +1.2
496,793 + MPMX19_05015 0.22 -0.7
496,793 + MPMX19_05015 0.22 -1.6
496,793 + MPMX19_05015 0.22 +0.4
496,794 - MPMX19_05015 0.22 +1.0
496,794 - MPMX19_05015 0.22 +0.7
496,794 - MPMX19_05015 0.22 -0.6
496,794 - MPMX19_05015 0.22 -0.4
496,817 + MPMX19_05015 0.26 +1.5
496,817 + MPMX19_05015 0.26 +0.7
496,817 + MPMX19_05015 0.26 -0.1
496,817 + MPMX19_05015 0.26 -1.1
496,817 + MPMX19_05015 0.26 +0.3
496,818 - MPMX19_05015 0.26 -1.7
496,818 - MPMX19_05015 0.26 -0.9
496,818 - MPMX19_05015 0.26 +0.5
496,818 - MPMX19_05015 0.26 +0.1
496,818 - MPMX19_05015 0.26 +0.5
496,818 - MPMX19_05015 0.26 +1.0
496,818 - MPMX19_05015 0.26 +0.4
496,818 - MPMX19_05015 0.26 +0.3
497,006 + MPMX19_05015 0.60 +0.4
497,006 + MPMX19_05015 0.60 +0.0
497,006 + MPMX19_05015 0.60 +0.1
497,006 + MPMX19_05015 0.60 -0.1
497,007 - MPMX19_05015 0.61 +0.6
497,007 - MPMX19_05015 0.61 -1.3
497,007 - MPMX19_05015 0.61 -0.3
497,099 + MPMX19_05015 0.77 +0.9
497,100 - MPMX19_05015 0.77 +3.5
497,100 - MPMX19_05015 0.77 -0.3
497,328 + +2.0
497,328 + -0.8
497,328 + -0.8
497,328 + -1.1
497,328 + -0.6
497,328 + -1.1
497,328 + +0.9
497,329 - -0.6
497,329 - -0.3
497,329 - +0.1
497,329 - -0.6
497,329 - -0.5
497,823 + MPMX19_05016 0.65 +1.7
497,824 - MPMX19_05016 0.65 -0.5
497,824 - MPMX19_05016 0.65 -0.1

Or see this region's nucleotide sequence