Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05012

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05010 and MPMX19_05011 overlap by 4 nucleotidesMPMX19_05011 and MPMX19_05012 are separated by 214 nucleotidesMPMX19_05012 and MPMX19_05013 are separated by 30 nucleotides MPMX19_05010: MPMX19_05010 - Oxygen-dependent coproporphyrinogen-III oxidase, at 492,272 to 493,159 _05010 MPMX19_05011: MPMX19_05011 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 493,156 to 493,716 _05011 MPMX19_05012: MPMX19_05012 - Ubiquinol-cytochrome c reductase iron-sulfur subunit, at 493,931 to 494,500 _05012 MPMX19_05013: MPMX19_05013 - Cytochrome b, at 494,531 to 495,799 _05013 Position (kb) 493 494 495Strain fitness (log2 ratio) -2 -1 0 1 2at 493.406 kb on + strand, within MPMX19_05011at 493.406 kb on + strand, within MPMX19_05011at 493.406 kb on + strand, within MPMX19_05011at 493.406 kb on + strand, within MPMX19_05011at 493.406 kb on + strand, within MPMX19_05011at 493.407 kb on - strand, within MPMX19_05011at 493.407 kb on - strand, within MPMX19_05011at 493.407 kb on - strand, within MPMX19_05011at 493.407 kb on - strand, within MPMX19_05011at 493.467 kb on - strand, within MPMX19_05011at 493.511 kb on + strand, within MPMX19_05011at 493.511 kb on + strand, within MPMX19_05011at 493.512 kb on - strand, within MPMX19_05011at 493.512 kb on - strand, within MPMX19_05011at 493.512 kb on - strand, within MPMX19_05011at 493.512 kb on - strand, within MPMX19_05011at 493.512 kb on - strand, within MPMX19_05011at 493.512 kb on - strand, within MPMX19_05011at 493.512 kb on - strand, within MPMX19_05011at 493.512 kb on - strand, within MPMX19_05011at 493.712 kb on + strandat 493.712 kb on + strandat 493.712 kb on + strandat 493.713 kb on - strandat 493.713 kb on - strandat 493.713 kb on - strandat 493.713 kb on - strandat 493.713 kb on - strandat 493.713 kb on - strandat 493.767 kb on + strandat 493.767 kb on + strandat 493.767 kb on + strandat 493.767 kb on + strandat 493.767 kb on + strandat 493.767 kb on + strandat 493.768 kb on - strandat 493.768 kb on - strandat 493.768 kb on - strandat 493.769 kb on + strandat 493.769 kb on + strandat 493.769 kb on + strandat 493.769 kb on + strandat 493.770 kb on - strandat 493.792 kb on + strandat 493.792 kb on + strandat 493.792 kb on + strandat 493.793 kb on - strandat 493.862 kb on + strandat 493.862 kb on + strandat 493.862 kb on + strandat 493.862 kb on + strandat 493.930 kb on + strandat 493.930 kb on + strandat 493.930 kb on + strandat 493.930 kb on + strandat 494.367 kb on - strand, within MPMX19_05012at 494.402 kb on + strand, within MPMX19_05012at 494.403 kb on - strand, within MPMX19_05012at 494.463 kb on - strandat 494.463 kb on - strandat 494.621 kb on + strandat 494.622 kb on - strandat 494.654 kb on + strandat 494.654 kb on + strandat 494.654 kb on + strandat 494.654 kb on + strandat 494.654 kb on + strandat 494.654 kb on + strandat 494.655 kb on - strandat 494.655 kb on - strandat 494.655 kb on - strandat 494.655 kb on - strandat 494.655 kb on - strandat 494.655 kb on - strandat 494.732 kb on + strand, within MPMX19_05013at 494.732 kb on + strand, within MPMX19_05013at 494.733 kb on - strand, within MPMX19_05013at 494.792 kb on + strand, within MPMX19_05013at 494.793 kb on - strand, within MPMX19_05013at 494.810 kb on + strand, within MPMX19_05013at 494.810 kb on + strand, within MPMX19_05013at 494.810 kb on + strand, within MPMX19_05013at 494.811 kb on - strand, within MPMX19_05013at 494.852 kb on + strand, within MPMX19_05013at 494.853 kb on - strand, within MPMX19_05013at 494.853 kb on - strand, within MPMX19_05013at 494.853 kb on - strand, within MPMX19_05013at 494.853 kb on - strand, within MPMX19_05013at 494.876 kb on + strand, within MPMX19_05013at 494.876 kb on + strand, within MPMX19_05013at 494.876 kb on + strand, within MPMX19_05013at 494.877 kb on - strand, within MPMX19_05013at 494.888 kb on + strand, within MPMX19_05013at 494.888 kb on + strand, within MPMX19_05013at 494.889 kb on - strand, within MPMX19_05013at 494.889 kb on - strand, within MPMX19_05013at 494.889 kb on - strand, within MPMX19_05013at 494.966 kb on + strand, within MPMX19_05013at 494.966 kb on + strand, within MPMX19_05013at 494.967 kb on - strand, within MPMX19_05013at 494.967 kb on - strand, within MPMX19_05013at 494.967 kb on - strand, within MPMX19_05013at 494.967 kb on - strand, within MPMX19_05013at 494.967 kb on - strand, within MPMX19_05013at 494.967 kb on - strand, within MPMX19_05013at 495.248 kb on + strand, within MPMX19_05013at 495.248 kb on + strand, within MPMX19_05013at 495.249 kb on - strand, within MPMX19_05013at 495.326 kb on + strand, within MPMX19_05013at 495.326 kb on + strand, within MPMX19_05013at 495.326 kb on + strand, within MPMX19_05013at 495.326 kb on + strand, within MPMX19_05013at 495.326 kb on + strand, within MPMX19_05013at 495.326 kb on + strand, within MPMX19_05013at 495.327 kb on - strand, within MPMX19_05013at 495.327 kb on - strand, within MPMX19_05013at 495.327 kb on - strand, within MPMX19_05013at 495.347 kb on + strand, within MPMX19_05013at 495.347 kb on + strand, within MPMX19_05013at 495.347 kb on + strand, within MPMX19_05013at 495.347 kb on + strand, within MPMX19_05013at 495.348 kb on - strand, within MPMX19_05013at 495.348 kb on - strand, within MPMX19_05013at 495.348 kb on - strand, within MPMX19_05013at 495.348 kb on - strand, within MPMX19_05013at 495.348 kb on - strand, within MPMX19_05013at 495.398 kb on + strand, within MPMX19_05013at 495.398 kb on + strand, within MPMX19_05013at 495.399 kb on - strand, within MPMX19_05013at 495.413 kb on + strand, within MPMX19_05013at 495.413 kb on + strand, within MPMX19_05013at 495.413 kb on + strand, within MPMX19_05013at 495.414 kb on - strand, within MPMX19_05013at 495.414 kb on - strand, within MPMX19_05013at 495.414 kb on - strand, within MPMX19_05013

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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493,406 + MPMX19_05011 0.45 -0.0
493,406 + MPMX19_05011 0.45 +0.7
493,406 + MPMX19_05011 0.45 +0.0
493,406 + MPMX19_05011 0.45 -0.3
493,406 + MPMX19_05011 0.45 +1.1
493,407 - MPMX19_05011 0.45 -1.3
493,407 - MPMX19_05011 0.45 +0.5
493,407 - MPMX19_05011 0.45 -0.3
493,407 - MPMX19_05011 0.45 -1.1
493,467 - MPMX19_05011 0.55 +0.4
493,511 + MPMX19_05011 0.63 -0.6
493,511 + MPMX19_05011 0.63 +0.9
493,512 - MPMX19_05011 0.63 -0.8
493,512 - MPMX19_05011 0.63 +0.4
493,512 - MPMX19_05011 0.63 -0.3
493,512 - MPMX19_05011 0.63 -1.4
493,512 - MPMX19_05011 0.63 -0.5
493,512 - MPMX19_05011 0.63 +0.3
493,512 - MPMX19_05011 0.63 -0.7
493,512 - MPMX19_05011 0.63 -0.5
493,712 + -2.7
493,712 + -0.3
493,712 + -1.6
493,713 - -0.8
493,713 - -1.3
493,713 - -0.7
493,713 - -0.6
493,713 - -1.3
493,713 - -1.7
493,767 + -1.3
493,767 + +0.4
493,767 + +0.2
493,767 + -0.1
493,767 + +0.2
493,767 + -1.7
493,768 - -0.8
493,768 - -2.4
493,768 - -1.6
493,769 + -0.1
493,769 + +0.6
493,769 + +0.6
493,769 + -1.9
493,770 - -1.1
493,792 + -1.6
493,792 + -1.5
493,792 + +1.1
493,793 - -1.3
493,862 + -1.4
493,862 + +0.2
493,862 + +0.7
493,862 + -0.3
493,930 + -0.6
493,930 + -0.3
493,930 + +0.7
493,930 + +1.2
494,367 - MPMX19_05012 0.76 +1.7
494,402 + MPMX19_05012 0.83 -0.3
494,403 - MPMX19_05012 0.83 +1.2
494,463 - -0.3
494,463 - +1.4
494,621 + +0.2
494,622 - -0.3
494,654 + +1.0
494,654 + -0.3
494,654 + +0.2
494,654 + +0.4
494,654 + +0.2
494,654 + -0.6
494,655 - -2.3
494,655 - -0.1
494,655 - -0.3
494,655 - -0.6
494,655 - +1.7
494,655 - -0.6
494,732 + MPMX19_05013 0.16 +0.4
494,732 + MPMX19_05013 0.16 -0.3
494,733 - MPMX19_05013 0.16 +0.2
494,792 + MPMX19_05013 0.21 -0.3
494,793 - MPMX19_05013 0.21 +0.2
494,810 + MPMX19_05013 0.22 +2.7
494,810 + MPMX19_05013 0.22 -0.3
494,810 + MPMX19_05013 0.22 -0.3
494,811 - MPMX19_05013 0.22 +0.2
494,852 + MPMX19_05013 0.25 +0.7
494,853 - MPMX19_05013 0.25 +1.7
494,853 - MPMX19_05013 0.25 +0.2
494,853 - MPMX19_05013 0.25 -0.3
494,853 - MPMX19_05013 0.25 -0.6
494,876 + MPMX19_05013 0.27 +0.7
494,876 + MPMX19_05013 0.27 +0.7
494,876 + MPMX19_05013 0.27 +0.7
494,877 - MPMX19_05013 0.27 +1.2
494,888 + MPMX19_05013 0.28 +0.7
494,888 + MPMX19_05013 0.28 +0.2
494,889 - MPMX19_05013 0.28 +0.7
494,889 - MPMX19_05013 0.28 -0.3
494,889 - MPMX19_05013 0.28 -0.3
494,966 + MPMX19_05013 0.34 +0.2
494,966 + MPMX19_05013 0.34 -0.6
494,967 - MPMX19_05013 0.34 -0.3
494,967 - MPMX19_05013 0.34 -1.8
494,967 - MPMX19_05013 0.34 -0.8
494,967 - MPMX19_05013 0.34 -0.1
494,967 - MPMX19_05013 0.34 +0.4
494,967 - MPMX19_05013 0.34 +0.2
495,248 + MPMX19_05013 0.57 -0.3
495,248 + MPMX19_05013 0.57 -0.8
495,249 - MPMX19_05013 0.57 -0.8
495,326 + MPMX19_05013 0.63 -0.6
495,326 + MPMX19_05013 0.63 +2.7
495,326 + MPMX19_05013 0.63 -1.8
495,326 + MPMX19_05013 0.63 +0.7
495,326 + MPMX19_05013 0.63 -0.3
495,326 + MPMX19_05013 0.63 +0.7
495,327 - MPMX19_05013 0.63 +2.7
495,327 - MPMX19_05013 0.63 +1.3
495,327 - MPMX19_05013 0.63 +0.7
495,347 + MPMX19_05013 0.64 +0.4
495,347 + MPMX19_05013 0.64 +2.3
495,347 + MPMX19_05013 0.64 +0.7
495,347 + MPMX19_05013 0.64 +1.7
495,348 - MPMX19_05013 0.64 -0.1
495,348 - MPMX19_05013 0.64 -0.3
495,348 - MPMX19_05013 0.64 -1.1
495,348 - MPMX19_05013 0.64 +0.5
495,348 - MPMX19_05013 0.64 +0.2
495,398 + MPMX19_05013 0.68 +0.7
495,398 + MPMX19_05013 0.68 +0.7
495,399 - MPMX19_05013 0.68 -0.1
495,413 + MPMX19_05013 0.70 +0.2
495,413 + MPMX19_05013 0.70 -1.1
495,413 + MPMX19_05013 0.70 +0.2
495,414 - MPMX19_05013 0.70 +1.7
495,414 - MPMX19_05013 0.70 +0.7
495,414 - MPMX19_05013 0.70 +0.7

Or see this region's nucleotide sequence