Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04970 and MPMX19_04971 overlap by 4 nucleotides MPMX19_04971 and MPMX19_04972 are separated by 136 nucleotides
MPMX19_04970: MPMX19_04970 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 436,644 to 439,628
_04970
MPMX19_04971: MPMX19_04971 - Sensor histidine kinase RcsC, at 439,625 to 442,258
_04971
MPMX19_04972: MPMX19_04972 - hypothetical protein, at 442,395 to 443,723
_04972
Position (kb) 439
440
441
442
443 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 438.795 kb on + strand, within MPMX19_04970 at 438.795 kb on + strand, within MPMX19_04970 at 438.795 kb on + strand, within MPMX19_04970 at 438.795 kb on + strand, within MPMX19_04970 at 438.796 kb on - strand, within MPMX19_04970 at 438.796 kb on - strand, within MPMX19_04970 at 438.796 kb on - strand, within MPMX19_04970 at 438.796 kb on - strand, within MPMX19_04970 at 438.796 kb on - strand, within MPMX19_04970 at 438.796 kb on - strand, within MPMX19_04970 at 438.813 kb on + strand, within MPMX19_04970 at 438.814 kb on - strand, within MPMX19_04970 at 439.009 kb on - strand, within MPMX19_04970 at 439.009 kb on - strand, within MPMX19_04970 at 439.116 kb on + strand, within MPMX19_04970 at 439.116 kb on + strand, within MPMX19_04970 at 439.116 kb on + strand, within MPMX19_04970 at 439.117 kb on - strand, within MPMX19_04970 at 439.341 kb on + strand at 439.341 kb on + strand at 439.341 kb on + strand at 439.341 kb on + strand at 439.341 kb on + strand at 439.342 kb on - strand at 439.342 kb on - strand at 439.342 kb on - strand at 439.342 kb on - strand at 439.342 kb on - strand at 439.342 kb on - strand at 439.342 kb on - strand at 439.455 kb on + strand at 439.455 kb on + strand at 439.456 kb on - strand at 439.456 kb on - strand at 439.456 kb on - strand at 439.552 kb on + strand at 439.552 kb on + strand at 439.552 kb on + strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.823 kb on + strand at 439.823 kb on + strand at 439.823 kb on + strand at 439.823 kb on + strand at 439.824 kb on - strand at 439.824 kb on - strand at 439.824 kb on - strand at 440.048 kb on + strand, within MPMX19_04971 at 440.049 kb on - strand, within MPMX19_04971 at 440.049 kb on - strand, within MPMX19_04971 at 440.222 kb on + strand, within MPMX19_04971 at 440.223 kb on - strand, within MPMX19_04971 at 440.223 kb on - strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 442.052 kb on + strand at 442.053 kb on - strand at 442.358 kb on + strand at 442.358 kb on + strand at 442.358 kb on + strand at 442.359 kb on - strand at 442.359 kb on - strand at 442.378 kb on + strand at 442.378 kb on + strand at 442.378 kb on + strand at 442.378 kb on + strand at 442.379 kb on - strand at 442.379 kb on - strand at 442.456 kb on + strand at 442.471 kb on + strand at 442.471 kb on + strand at 442.471 kb on + strand at 442.472 kb on - strand at 442.472 kb on - strand at 442.594 kb on + strand, within MPMX19_04972 at 442.594 kb on + strand, within MPMX19_04972 at 442.624 kb on - strand, within MPMX19_04972 at 442.624 kb on - strand, within MPMX19_04972 at 442.659 kb on + strand, within MPMX19_04972 at 442.660 kb on - strand, within MPMX19_04972 at 442.981 kb on - strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.050 kb on - strand, within MPMX19_04972
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 438,795 + MPMX19_04970 0.72 -0.8 438,795 + MPMX19_04970 0.72 -3.0 438,795 + MPMX19_04970 0.72 +0.2 438,795 + MPMX19_04970 0.72 -0.0 438,796 - MPMX19_04970 0.72 +0.8 438,796 - MPMX19_04970 0.72 -1.6 438,796 - MPMX19_04970 0.72 -1.5 438,796 - MPMX19_04970 0.72 +0.1 438,796 - MPMX19_04970 0.72 +1.3 438,796 - MPMX19_04970 0.72 +0.5 438,813 + MPMX19_04970 0.73 -0.9 438,814 - MPMX19_04970 0.73 -1.1 439,009 - MPMX19_04970 0.79 +0.8 439,009 - MPMX19_04970 0.79 +0.0 439,116 + MPMX19_04970 0.83 +0.5 439,116 + MPMX19_04970 0.83 -0.8 439,116 + MPMX19_04970 0.83 -1.7 439,117 - MPMX19_04970 0.83 +0.1 439,341 + -0.6 439,341 + +0.6 439,341 + -0.2 439,341 + -1.5 439,341 + -0.2 439,342 - -0.7 439,342 - +0.3 439,342 - -0.6 439,342 - +0.9 439,342 - -0.9 439,342 - +0.2 439,342 - -1.0 439,455 + +0.2 439,455 + -0.1 439,456 - -0.3 439,456 - -1.6 439,456 - -0.2 439,552 + -1.2 439,552 + -0.2 439,552 + -1.2 439,553 - -1.1 439,553 - +0.0 439,553 - +1.1 439,553 - +0.3 439,553 - +0.2 439,553 - -0.2 439,553 - +0.2 439,553 - -0.9 439,742 + -1.4 439,742 + -0.7 439,742 + +0.5 439,742 + -0.6 439,742 + -0.9 439,742 + +1.4 439,742 + +0.4 439,742 + +0.8 439,742 + -0.8 439,742 + -0.3 439,742 + -0.5 439,742 + +0.5 439,742 + -0.1 439,742 + -0.5 439,742 + +1.8 439,742 + -1.4 439,742 + -0.2 439,742 + -0.2 439,743 - +0.0 439,743 - -0.9 439,743 - +0.1 439,743 - -0.8 439,743 - -0.7 439,743 - +0.5 439,743 - -0.5 439,743 - +0.9 439,743 - -0.4 439,743 - -0.5 439,743 - -0.6 439,743 - -2.4 439,743 - -0.9 439,743 - -1.8 439,743 - -0.4 439,743 - -0.2 439,743 - -0.2 439,743 - -0.7 439,743 - -0.6 439,743 - +0.5 439,743 - -1.9 439,743 - -0.4 439,743 - -0.5 439,743 - -0.1 439,743 - +0.4 439,743 - -0.9 439,743 - -0.5 439,743 - -1.3 439,823 + -1.1 439,823 + -0.2 439,823 + +0.8 439,823 + +0.3 439,824 - -2.1 439,824 - +0.6 439,824 - +0.4 440,048 + MPMX19_04971 0.16 -0.4 440,049 - MPMX19_04971 0.16 -1.1 440,049 - MPMX19_04971 0.16 -0.7 440,222 + MPMX19_04971 0.23 -0.6 440,223 - MPMX19_04971 0.23 -2.7 440,223 - MPMX19_04971 0.23 +1.2 441,662 + MPMX19_04971 0.77 -0.1 441,662 + MPMX19_04971 0.77 +0.2 441,662 + MPMX19_04971 0.77 -0.9 441,662 + MPMX19_04971 0.77 +0.5 441,662 + MPMX19_04971 0.77 -0.4 441,662 + MPMX19_04971 0.77 -1.9 441,662 + MPMX19_04971 0.77 +0.6 441,663 - MPMX19_04971 0.77 +1.2 441,663 - MPMX19_04971 0.77 +0.3 441,663 - MPMX19_04971 0.77 +0.7 441,663 - MPMX19_04971 0.77 -0.1 441,663 - MPMX19_04971 0.77 -1.2 441,663 - MPMX19_04971 0.77 -0.4 441,663 - MPMX19_04971 0.77 +0.2 441,663 - MPMX19_04971 0.77 -0.9 441,663 - MPMX19_04971 0.77 +0.2 441,956 + MPMX19_04971 0.88 -0.4 441,956 + MPMX19_04971 0.88 -1.4 441,956 + MPMX19_04971 0.88 +0.9 441,956 + MPMX19_04971 0.88 +0.2 441,956 + MPMX19_04971 0.88 -0.2 442,052 + -0.1 442,053 - +0.3 442,358 + -2.3 442,358 + +0.8 442,358 + -0.2 442,359 - -0.9 442,359 - -1.4 442,378 + -0.7 442,378 + -0.6 442,378 + +0.9 442,378 + -0.2 442,379 - -1.0 442,379 - +0.1 442,456 + +0.6 442,471 + -1.1 442,471 + +0.4 442,471 + +0.3 442,472 - -0.7 442,472 - -0.5 442,594 + MPMX19_04972 0.15 -1.8 442,594 + MPMX19_04972 0.15 +0.4 442,624 - MPMX19_04972 0.17 +0.6 442,624 - MPMX19_04972 0.17 -0.8 442,659 + MPMX19_04972 0.20 -0.1 442,660 - MPMX19_04972 0.20 -1.4 442,981 - MPMX19_04972 0.44 +0.2 443,049 + MPMX19_04972 0.49 -0.8 443,049 + MPMX19_04972 0.49 -0.7 443,049 + MPMX19_04972 0.49 +1.5 443,049 + MPMX19_04972 0.49 +0.3 443,050 - MPMX19_04972 0.49 -0.6
Or see this region's nucleotide sequence