Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04952

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04951 and MPMX19_04952 overlap by 4 nucleotidesMPMX19_04952 and MPMX19_04953 are separated by 4 nucleotidesMPMX19_04953 and MPMX19_04954 are separated by 54 nucleotides MPMX19_04951: MPMX19_04951 - hypothetical protein, at 414,769 to 415,785 _04951 MPMX19_04952: MPMX19_04952 - Lipopolysaccharide export system ATP-binding protein LptB, at 415,782 to 416,501 _04952 MPMX19_04953: MPMX19_04953 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 416,506 to 417,279 _04953 MPMX19_04954: MPMX19_04954 - Putative hydro-lyase, at 417,334 to 418,122 _04954 Position (kb) 415 416 417Strain fitness (log2 ratio) -2 -1 0 1 2 3at 414.795 kb on + strandat 414.795 kb on + strandat 414.795 kb on + strandat 414.795 kb on + strandat 414.795 kb on + strandat 414.796 kb on - strandat 414.796 kb on - strandat 414.796 kb on - strandat 414.796 kb on - strandat 414.796 kb on - strandat 414.934 kb on + strand, within MPMX19_04951at 414.935 kb on - strand, within MPMX19_04951at 414.970 kb on + strand, within MPMX19_04951at 414.971 kb on - strand, within MPMX19_04951at 414.985 kb on + strand, within MPMX19_04951at 414.985 kb on + strand, within MPMX19_04951at 414.985 kb on + strand, within MPMX19_04951at 414.985 kb on + strand, within MPMX19_04951at 414.986 kb on - strand, within MPMX19_04951at 414.986 kb on - strand, within MPMX19_04951at 414.986 kb on - strand, within MPMX19_04951at 415.111 kb on + strand, within MPMX19_04951at 415.112 kb on - strand, within MPMX19_04951at 415.112 kb on - strand, within MPMX19_04951at 415.112 kb on - strand, within MPMX19_04951at 415.198 kb on + strand, within MPMX19_04951at 415.198 kb on + strand, within MPMX19_04951at 415.198 kb on + strand, within MPMX19_04951at 415.199 kb on - strand, within MPMX19_04951at 415.255 kb on + strand, within MPMX19_04951at 415.255 kb on + strand, within MPMX19_04951at 415.256 kb on - strand, within MPMX19_04951at 415.256 kb on - strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.330 kb on + strand, within MPMX19_04951at 415.330 kb on + strand, within MPMX19_04951at 415.331 kb on - strand, within MPMX19_04951at 415.331 kb on - strand, within MPMX19_04951at 415.333 kb on + strand, within MPMX19_04951at 415.334 kb on - strand, within MPMX19_04951at 415.447 kb on - strand, within MPMX19_04951at 415.453 kb on + strand, within MPMX19_04951at 415.600 kb on + strand, within MPMX19_04951at 415.601 kb on - strand, within MPMX19_04951at 415.601 kb on - strand, within MPMX19_04951at 415.651 kb on + strand, within MPMX19_04951at 415.651 kb on + strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 416.305 kb on + strand, within MPMX19_04952at 416.306 kb on - strand, within MPMX19_04952at 416.306 kb on - strand, within MPMX19_04952at 416.421 kb on + strand, within MPMX19_04952at 416.421 kb on + strand, within MPMX19_04952at 416.487 kb on + strandat 416.488 kb on - strandat 416.488 kb on - strandat 416.488 kb on - strandat 416.605 kb on + strand, within MPMX19_04953at 416.926 kb on + strand, within MPMX19_04953at 417.187 kb on + strand, within MPMX19_04953at 417.187 kb on + strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.265 kb on + strandat 417.265 kb on + strandat 417.265 kb on + strandat 417.266 kb on - strandat 417.266 kb on - strandat 417.266 kb on - strandat 417.266 kb on - strandat 417.266 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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414,795 + -0.5
414,795 + +1.0
414,795 + -0.6
414,795 + -0.2
414,795 + -0.4
414,796 - -0.2
414,796 - +0.8
414,796 - -1.4
414,796 - -1.4
414,796 - -1.9
414,934 + MPMX19_04951 0.16 -1.6
414,935 - MPMX19_04951 0.16 +2.8
414,970 + MPMX19_04951 0.20 +1.0
414,971 - MPMX19_04951 0.20 -0.8
414,985 + MPMX19_04951 0.21 -1.3
414,985 + MPMX19_04951 0.21 -0.4
414,985 + MPMX19_04951 0.21 -0.6
414,985 + MPMX19_04951 0.21 -2.1
414,986 - MPMX19_04951 0.21 -0.9
414,986 - MPMX19_04951 0.21 +1.0
414,986 - MPMX19_04951 0.21 +1.1
415,111 + MPMX19_04951 0.34 +0.3
415,112 - MPMX19_04951 0.34 -0.6
415,112 - MPMX19_04951 0.34 -1.2
415,112 - MPMX19_04951 0.34 -0.9
415,198 + MPMX19_04951 0.42 +0.8
415,198 + MPMX19_04951 0.42 -1.7
415,198 + MPMX19_04951 0.42 -1.8
415,199 - MPMX19_04951 0.42 +0.0
415,255 + MPMX19_04951 0.48 -0.9
415,255 + MPMX19_04951 0.48 +0.5
415,256 - MPMX19_04951 0.48 -0.6
415,256 - MPMX19_04951 0.48 -1.4
415,258 + MPMX19_04951 0.48 +0.5
415,258 + MPMX19_04951 0.48 +0.1
415,258 + MPMX19_04951 0.48 +0.9
415,258 + MPMX19_04951 0.48 -1.1
415,258 + MPMX19_04951 0.48 -0.8
415,258 + MPMX19_04951 0.48 -0.9
415,258 + MPMX19_04951 0.48 +0.3
415,258 + MPMX19_04951 0.48 -0.5
415,258 + MPMX19_04951 0.48 -0.9
415,258 + MPMX19_04951 0.48 +0.2
415,258 + MPMX19_04951 0.48 -1.6
415,258 + MPMX19_04951 0.48 -2.6
415,258 + MPMX19_04951 0.48 -1.4
415,259 - MPMX19_04951 0.48 -1.1
415,259 - MPMX19_04951 0.48 +0.8
415,259 - MPMX19_04951 0.48 -2.2
415,259 - MPMX19_04951 0.48 -1.7
415,259 - MPMX19_04951 0.48 -1.6
415,259 - MPMX19_04951 0.48 +0.1
415,259 - MPMX19_04951 0.48 -2.5
415,261 + MPMX19_04951 0.48 +0.2
415,261 + MPMX19_04951 0.48 +0.3
415,261 + MPMX19_04951 0.48 -2.6
415,261 + MPMX19_04951 0.48 +1.3
415,261 + MPMX19_04951 0.48 +0.2
415,261 + MPMX19_04951 0.48 -2.2
415,261 + MPMX19_04951 0.48 -2.6
415,262 - MPMX19_04951 0.48 +1.0
415,262 - MPMX19_04951 0.48 +0.8
415,262 - MPMX19_04951 0.48 -2.1
415,262 - MPMX19_04951 0.48 -1.4
415,262 - MPMX19_04951 0.48 -0.2
415,262 - MPMX19_04951 0.48 -0.7
415,262 - MPMX19_04951 0.48 -0.4
415,330 + MPMX19_04951 0.55 -0.1
415,330 + MPMX19_04951 0.55 +0.0
415,331 - MPMX19_04951 0.55 -1.7
415,331 - MPMX19_04951 0.55 -0.8
415,333 + MPMX19_04951 0.55 -0.5
415,334 - MPMX19_04951 0.56 -1.2
415,447 - MPMX19_04951 0.67 -0.7
415,453 + MPMX19_04951 0.67 -0.1
415,600 + MPMX19_04951 0.82 -0.4
415,601 - MPMX19_04951 0.82 +0.6
415,601 - MPMX19_04951 0.82 -0.2
415,651 + MPMX19_04951 0.87 -1.8
415,651 + MPMX19_04951 0.87 +0.4
415,652 - MPMX19_04951 0.87 -0.1
415,652 - MPMX19_04951 0.87 -0.6
415,652 - MPMX19_04951 0.87 -1.4
415,652 - MPMX19_04951 0.87 -1.0
415,652 - MPMX19_04951 0.87 -0.0
415,652 - MPMX19_04951 0.87 -1.3
416,305 + MPMX19_04952 0.73 -0.1
416,306 - MPMX19_04952 0.73 -0.9
416,306 - MPMX19_04952 0.73 -2.1
416,421 + MPMX19_04952 0.89 +0.2
416,421 + MPMX19_04952 0.89 -0.4
416,487 + +0.6
416,488 - -0.3
416,488 - -0.6
416,488 - -1.6
416,605 + MPMX19_04953 0.13 -0.8
416,926 + MPMX19_04953 0.54 +0.1
417,187 + MPMX19_04953 0.88 -0.7
417,187 + MPMX19_04953 0.88 -0.7
417,188 - MPMX19_04953 0.88 -1.5
417,188 - MPMX19_04953 0.88 -2.1
417,188 - MPMX19_04953 0.88 +0.6
417,188 - MPMX19_04953 0.88 -0.3
417,188 - MPMX19_04953 0.88 -0.9
417,265 + -2.1
417,265 + -0.1
417,265 + -0.6
417,266 - +0.1
417,266 - -0.8
417,266 - -1.2
417,266 - -0.1
417,266 - -0.9

Or see this region's nucleotide sequence