Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04948 and MPMX19_04949 are separated by 146 nucleotides MPMX19_04949 and MPMX19_04950 are separated by 226 nucleotides
MPMX19_04948: MPMX19_04948 - HTH-type transcriptional regulator GltR, at 411,257 to 412,204
_04948
MPMX19_04949: MPMX19_04949 - Leu/Ile/Val-binding protein, at 412,351 to 413,676
_04949
MPMX19_04950: MPMX19_04950 - High-affinity branched-chain amino acid transport system permease protein LivH, at 413,903 to 414,769
_04950
Position (kb) 412
413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 411.458 kb on + strand, within MPMX19_04948 at 411.459 kb on - strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 412.191 kb on + strand at 412.191 kb on + strand at 412.216 kb on + strand at 412.236 kb on + strand at 412.301 kb on - strand at 412.301 kb on - strand at 412.519 kb on + strand, within MPMX19_04949 at 412.519 kb on + strand, within MPMX19_04949 at 412.766 kb on - strand, within MPMX19_04949 at 413.156 kb on - strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.602 kb on + strand at 413.602 kb on + strand at 413.602 kb on + strand at 413.602 kb on + strand at 413.603 kb on - strand at 413.603 kb on - strand at 413.603 kb on - strand at 413.603 kb on - strand at 413.705 kb on + strand at 413.759 kb on + strand at 413.759 kb on + strand at 413.760 kb on - strand at 413.960 kb on + strand at 413.961 kb on - strand at 413.961 kb on - strand at 413.961 kb on - strand at 413.961 kb on - strand at 413.961 kb on - strand at 413.961 kb on - strand at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.146 kb on + strand, within MPMX19_04950 at 414.147 kb on - strand, within MPMX19_04950
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 411,458 + MPMX19_04948 0.21 -0.1 411,459 - MPMX19_04948 0.21 -0.8 411,704 + MPMX19_04948 0.47 +0.8 411,704 + MPMX19_04948 0.47 +0.2 411,704 + MPMX19_04948 0.47 -0.9 411,704 + MPMX19_04948 0.47 -0.2 411,704 + MPMX19_04948 0.47 -1.1 412,191 + -1.3 412,191 + -1.1 412,216 + -0.5 412,236 + +0.2 412,301 - -1.1 412,301 - -1.4 412,519 + MPMX19_04949 0.13 -1.1 412,519 + MPMX19_04949 0.13 -1.2 412,766 - MPMX19_04949 0.31 +0.3 413,156 - MPMX19_04949 0.61 -0.9 413,188 + MPMX19_04949 0.63 -1.0 413,188 + MPMX19_04949 0.63 -0.8 413,188 + MPMX19_04949 0.63 -3.1 413,188 + MPMX19_04949 0.63 +0.9 413,188 + MPMX19_04949 0.63 -0.5 413,189 - MPMX19_04949 0.63 -1.2 413,189 - MPMX19_04949 0.63 -1.1 413,189 - MPMX19_04949 0.63 -1.9 413,189 - MPMX19_04949 0.63 -1.3 413,189 - MPMX19_04949 0.63 +1.2 413,189 - MPMX19_04949 0.63 -1.3 413,602 + +0.0 413,602 + -1.1 413,602 + +0.8 413,602 + -0.2 413,603 - -0.6 413,603 - -0.6 413,603 - -0.5 413,603 - -1.1 413,705 + -0.7 413,759 + -2.3 413,759 + -0.1 413,760 - -1.4 413,960 + +0.6 413,961 - -0.5 413,961 - +0.3 413,961 - -1.1 413,961 - -1.3 413,961 - +0.0 413,961 - -1.4 414,050 + MPMX19_04950 0.17 -1.2 414,050 + MPMX19_04950 0.17 -0.8 414,050 + MPMX19_04950 0.17 +0.4 414,050 + MPMX19_04950 0.17 -1.6 414,050 + MPMX19_04950 0.17 +0.8 414,050 + MPMX19_04950 0.17 -0.1 414,050 + MPMX19_04950 0.17 +0.5 414,050 + MPMX19_04950 0.17 +0.1 414,050 + MPMX19_04950 0.17 -0.6 414,050 + MPMX19_04950 0.17 -0.4 414,051 - MPMX19_04950 0.17 -1.2 414,051 - MPMX19_04950 0.17 -2.2 414,051 - MPMX19_04950 0.17 -1.3 414,051 - MPMX19_04950 0.17 -1.8 414,051 - MPMX19_04950 0.17 -0.6 414,051 - MPMX19_04950 0.17 -1.2 414,051 - MPMX19_04950 0.17 +0.4 414,051 - MPMX19_04950 0.17 -1.6 414,051 - MPMX19_04950 0.17 -1.6 414,051 - MPMX19_04950 0.17 -1.7 414,051 - MPMX19_04950 0.17 +0.3 414,051 - MPMX19_04950 0.17 +0.4 414,051 - MPMX19_04950 0.17 -1.5 414,051 - MPMX19_04950 0.17 -1.2 414,051 - MPMX19_04950 0.17 +0.0 414,051 - MPMX19_04950 0.17 -1.2 414,146 + MPMX19_04950 0.28 +0.4 414,147 - MPMX19_04950 0.28 -1.2
Or see this region's nucleotide sequence